EY659377

Overview
NameEY659377
Unique NameEY659377
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length939
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY659377_ssr21 microsatellite EY659377_ssr21:21..35. BLAST: Citrus ESTs to Prunus persica proteins V1
EY659377_ssr127 microsatellite EY659377_ssr127:127..138. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY659377 vs. ExPASy Swiss-Prot
Match: IDH5_ARATH (Isocitrate dehydrogenase [NAD] catalytic subunit 5, mitochondrial OS=Arabidopsis thaliana GN=IDH5 PE=1 SV=1)

HSP 1 Score: 311.612 bits (797), Expect = 4.130e-84
Identity = 164/250 (65.60%), Postives = 182/250 (72.80%), Query Frame = 1
Query:  145 SMATQLLRRVLGSRSRQILSTTNPNPNLALPIARAFSSDITPITATLFPGDGIGPEIAESVKQVFRTAEVPVDWEEHYVGTEIDPRTQSFLTWESLESVRRNKVGLKGPMATPIGKGHRSLNLTLRKELNLYANVRPCYSLPGYKTRYDDVNLITIRENTEGEYSGLEHQXXXXXXXXXXXXXXXXXXXXXXNMXFTMRRPWEEKSILHTQSNIMQKTDGLFLKWCPEVAQNTLR-*HMKKVYQHCWMML 891
            +MA  L RR++G+RS QIL   N +   A  +ARAF S  TPITATLFPGDGIGPEIAESVK+VF TA VP++WEEHYVGTEIDPRTQSFLTWESLESVRRNKVGLKGPMATPIGKGHRSLNLTLRKELNLYANVRPCYSLPGYKTRYDDV+LITIRENTEGEYSGLEHQ                            +    E+     ++NIMQKTDGLFLK C EVA+      + + V  +C MML
Sbjct:    2 TMAANLARRLIGNRSTQILGAVNSSSGAASSVARAFCSSTTPITATLFPGDGIGPEIAESVKKVFTTAGVPIEWEEHYVGTEIDPRTQSFLTWESLESVRRNKVGLKGPMATPIGKGHRSLNLTLRKELNLYANVRPCYSLPGYKTRYDDVDLITIRENTEGEYSGLEHQVVRGVVESLKIITRQASLRVAEYAFLYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMML 251          
BLAST of EY659377 vs. ExPASy Swiss-Prot
Match: IDH6_ARATH (Isocitrate dehydrogenase [NAD] catalytic subunit 6, mitochondrial OS=Arabidopsis thaliana GN=IDH6 PE=1 SV=2)

HSP 1 Score: 285.034 bits (728), Expect = 4.139e-76
Identity = 149/250 (59.60%), Postives = 177/250 (70.80%), Query Frame = 1
Query:  145 SMATQLLRRVLGSRSRQILSTTNPNPNLALPIARAFSSDITPITATLFPGDGIGPEIAESVKQVFRTAEVPVDWEEHYVGTEIDPRTQSFLTWESLESVRRNKVGLKGPMATPIGKGHRSLNLTLRKELNLYANVRPCYSLPGYKTRYDDVNLITIRENTEGEYSGLEHQXXXXXXXXXXXXXXXXXXXXXXNMXFTMRRPWEEKSILHTQSNIMQKTDGLFLKWCPEVAQNTLR*HMKK-VYQHCWMML 891
            +M   L RR++G+ S QIL T++ +    + ++RAF S  TPI ATLFPGDGIGPEIAESVKQVF  A+V +DW+E +VGTE+DPRT SFLTW++L+SV +NKVGLKGPMATPIGKGHRSLNLTLRKELNLYANVRPCYSLPGYKTRYDDV+LITIRENTEGEYSGLEHQ                            +    +K     ++NIMQKTDGLFL+ C EVA      + +K V  +C MML
Sbjct:    2 TMTAFLARRLIGNGSSQILGTSSSSSGPFISVSRAFFSSSTPIKATLFPGDGIGPEIAESVKQVFTAADVVIDWDEQFVGTEVDPRTNSFLTWDNLQSVLKNKVGLKGPMATPIGKGHRSLNLTLRKELNLYANVRPCYSLPGYKTRYDDVDLITIRENTEGEYSGLEHQVVKGVVESLKIITRKASMRVAEYAFLYAKTHGRKKVSAIHKANIMQKTDGLFLQCCDEVAAKYPEIYYEKVVIDNCCMML 251          
BLAST of EY659377 vs. ExPASy Swiss-Prot
Match: LEU3_SOLTU (3-isopropylmalate dehydrogenase, chloroplastic OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 278.87 bits (712), Expect = 2.966e-74
Identity = 151/251 (60.16%), Postives = 173/251 (68.92%), Query Frame = 1
Query:  148 MATQLLRRVLGSRSRQILSTTNPNPNLALPIARAFSSDITP--ITATLFPGDGIGPEIAESVKQVFRTAEVPVDWEEHYVGTEIDPRTQSFLTWESLESVRRNKVGLKGPMATPIGKGHRSLNLTLRKELNLYANVRPCYSLPGYKTRYDDVNLITIRENTEGEYSGLEHQXXXXXXXXXXXXXXXXXXXXXXNMXFTMRRPWEEKSILHTQSNIMQKTDGLFLKWCPEVAQNTLR*HMKK-VYQHCWMML 891
            MA Q+ +R+L  R+  + S+            R F+S+     I ATLFPGDGIGPEIAESV+Q+F+ AEVP++WEEHYVGTE+DPRT SFLTWESLESVRRNKVGLKGPMATPIGKGHRSLNLTLRKELNLYANVRPCYSLPGYKTRYDDVNLITIRENTEGEYSGLEHQ                            +    E+     ++NIMQKTDGLFLK C EVA+       ++ V  +C MML
Sbjct:    1 MALQIAKRLLRCRADSVASSVRF-------FDRTFTSESNSNLIRATLFPGDGIGPEIAESVRQIFKVAEVPIEWEEHYVGTEVDPRTNSFLTWESLESVRRNKVGLKGPMATPIGKGHRSLNLTLRKELNLYANVRPCYSLPGYKTRYDDVNLITIRENTEGEYSGLEHQVVRGVVESLKIITRQASLRVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEIKYEEVVIDNCCMML 244          
BLAST of EY659377 vs. ExPASy Swiss-Prot
Match: IDH3A_DROME (Probable isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial OS=Drosophila melanogaster GN=l(1)G0156 PE=2 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 1.344e-42
Identity = 91/199 (45.73%), Postives = 125/199 (62.81%), Query Frame = 1
Query:  241 ARAFSSDITPITATLFPGDGIGPEIAESVKQVFRTAEVPVDWEEHYVGTEIDPRTQSFLTWESLESVRRNKVGLKGPMATPIGKGHRSLNLTLRKELNLYANVRPCYSLPGYKTRYDDVNLITIRENTEGEYSGLEHQXXXXXXXXXXXXXXXXXXXXXXNMXFTMRRPWEEKSILHTQSNIMQKTDGLFLKWCPEVAQ 837
            +R++SS    +T  L PGDGIGPEI+ +V+++F  A VP++WE   V     P  +  +   +++SV  NK+GLKGP+ TP+GKGHRSLNL LRKE NLYANVRPC SL GYKT YDDV+++TIRENTEGEYSG+EH+                            +    +K  +  ++NIM+ +DGLFL+   ++AQ
Sbjct:   40 SRSYSSGTKKVT--LIPGDGIGPEISAAVQKIFTAANVPIEWEAVDVTPVRGPDGKFGIPQAAIDSVNTNKIGLKGPLMTPVGKGHRSLNLALRKEFNLYANVRPCRSLEGYKTLYDDVDVVTIRENTEGEYSGIEHEIVDGVVQSIKLITEEASKRVAEYAFQYAKNNNRKKVTVVHKANIMRMSDGLFLRCVRDMAQ 236          
BLAST of EY659377 vs. ExPASy Swiss-Prot
Match: IDH2_YEAST (Isocitrate dehydrogenase [NAD] subunit 2, mitochondrial OS=Saccharomyces cerevisiae GN=IDH2 PE=1 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 2.063e-41
Identity = 71/129 (55.04%), Postives = 95/129 (73.64%), Query Frame = 1
Query:  274 TATLFPGDGIGPEIAESVKQVFRTAEVPVDWEEHYVGTEIDPRTQSFLTW---ESLESVRRNKVGLKGPMATPIGKGHRSLNLTLRKELNLYANVRPCYSLPGYKTRYDDVNLITIRENTEGEYSGLEH 651
            T +   GDGIGPEI++SVK++F  A VP++WE      ++ P   + LT     +++S+ +N V LKGP+ATPIGKGHRSLNLTLRK   L+ANVRP  S+ G+KT Y++V+L+ IRENTEGEYSG+EH
Sbjct:   38 TVSFIEGDGIGPEISKSVKKIFSAANVPIEWES----CDVSPIFVNGLTTIPDPAVQSITKNLVALKGPLATPIGKGHRSLNLTLRKTFGLFANVRPAKSIEGFKTTYENVDLVLIRENTEGEYSGIEH 162          

HSP 2 Score: 43.8986 bits (102), Expect = 2.063e-41
Identity = 31/85 (36.47%), Postives = 43/85 (50.59%), Query Frame = 3
Query:  666 GVVESLKIITRQASLRSAEYAVHYAKTMGREEYLAYTK---QYYAEN*WAFFEVVS*SCPEYPEITYE-ESVSTLLDDAWENPTA 908
            GVV+S+K+ITR AS R   YA  YA+ +GR   +   K   Q  A+    F  V      EYP++T E E +   +     NP+A
Sbjct:  167 GVVQSIKLITRDASERVIRYAFEYARAIGRPRVIVVHKSTIQRLADG--LFVNVAKELSKEYPDLTLETELIDNSVLKVVTNPSA 249          
BLAST of EY659377 vs. ExPASy Swiss-Prot
Match: IDHA_DICDI (Isocitrate dehydrogenase [NAD] regulatory subunit A, mitochondrial OS=Dictyostelium discoideum GN=idhA PE=3 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 2.535e-41
Identity = 90/199 (45.23%), Postives = 129/199 (64.82%), Query Frame = 1
Query:  244 RAFSSDITPIT-ATLFPGDGIGPEIAESVKQVFRTAEVPVDWEEHYVGTEIDPRTQSFLTWESLESVRRNKVGLKGPMATPIGKGHRSLNLTLRKELNLYANVRPCYSLPGYKTRYDDVNLITIRENTEGEYSGLEHQ-XXXXXXXXXXXXXXXXXXXXXXNMXFTMRRPWEEKSILHTQSNIMQKTDGLFLKWCPEVA 834
            R +SS  + I   TL PGDGIGPEI+ESVK+VF   + P++WE       +D  T   ++ E +ES+ +NK+GLKGP++TPIG GH+SLNL LRK  NLYAN+RPC S+PG+KTRY++VN + +RENTEGEYSG+E+Q                          + +    ++ + +H ++NIM+++DGLF+K C EV+
Sbjct:   14 RNYSSSTSKIQKVTLIPGDGIGPEISESVKRVFSAVKAPIEWET----VVVDANTG--ISKEVIESISKNKIGLKGPISTPIGTGHQSLNLGLRKTFNLYANIRPCLSIPGHKTRYNNVNTVVVRENTEGEYSGIENQPVKGVAQSIKIITKEASTRIAHYAFQYALANGRKKVTCIH-KANIMKQSDGLFVKSCREVS 205          
BLAST of EY659377 vs. ExPASy Swiss-Prot
Match: IDH3A_RAT (Isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial OS=Rattus norvegicus GN=Idh3a PE=1 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 7.375e-41
Identity = 90/201 (44.78%), Postives = 117/201 (58.21%), Query Frame = 1
Query:  238 IARAFSSDITPITATLFPGDGIGPEIAESVKQVFRTAEVPVDWEEHYVGTEIDPRTQSFLTWESLESVRRNKVGLKGPMATPIGKGHRSLNLTLRKELNLYANVRPCYSLPGYKTRYDDVNLITIRENTEGEYSGLEHQXXXXXXXXXXXXXXXXXXXXXXNMXFTMRRPWEEKSILHTQSNIMQKTDGLFLKWCPEVAQN 840
            + R F+  +   T TL PGDGIGPEI+ SV ++F  A+ P+ WEE  V     P  +  +  E+ ES+ +NK+GLKGP+ TPI  GH S+NL LRK  +LYANVRPC S+ GYKT Y DVN++TIRENTEGEYSG+EH                             R           ++NIM+ +DGLFL+ C EVA+N
Sbjct:   23 VTRGFAGGVQ--TVTLIPGDGIGPEISASVMKIFDAAKAPIQWEERNVTAIQGPGGKWMIPPEAKESMDKNKMGLKGPLKTPIAAGHPSMNLLLRKTFDLYANVRPCVSIEGYKTPYTDVNIVTIRENTEGEYSGIEHVIVDGVVQSIKLITEGASKRIAEFAFEYARNNHRSNVTAVHKANIMRMSDGLFLQKCREVAEN 221          
BLAST of EY659377 vs. ExPASy Swiss-Prot
Match: IDH3A_MOUSE (Isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial OS=Mus musculus GN=Idh3a PE=1 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 7.375e-41
Identity = 90/201 (44.78%), Postives = 117/201 (58.21%), Query Frame = 1
Query:  238 IARAFSSDITPITATLFPGDGIGPEIAESVKQVFRTAEVPVDWEEHYVGTEIDPRTQSFLTWESLESVRRNKVGLKGPMATPIGKGHRSLNLTLRKELNLYANVRPCYSLPGYKTRYDDVNLITIRENTEGEYSGLEHQXXXXXXXXXXXXXXXXXXXXXXNMXFTMRRPWEEKSILHTQSNIMQKTDGLFLKWCPEVAQN 840
            + R F+  +   T TL PGDGIGPEI+ SV ++F  A+ P+ WEE  V     P  +  +  E+ ES+ +NK+GLKGP+ TPI  GH S+NL LRK  +LYANVRPC S+ GYKT Y DVN++TIRENTEGEYSG+EH                             R           ++NIM+ +DGLFL+ C EVA+N
Sbjct:   23 VTRGFAGGVQ--TVTLIPGDGIGPEISASVMKIFDAAKAPIQWEERNVTAIQGPGGKWMIPPEAKESMDKNKMGLKGPLKTPIAAGHPSMNLLLRKTFDLYANVRPCVSIEGYKTPYTDVNIVTIRENTEGEYSGIEHVIVDGVVQSIKLITEEASKRIAEFAFEYARNNHRSNVTAVHKANIMRMSDGLFLQKCREVAEN 221          
BLAST of EY659377 vs. ExPASy Swiss-Prot
Match: IDH3A_BOVIN (Isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial OS=Bos taurus GN=IDH3A PE=1 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 9.631e-41
Identity = 89/201 (44.28%), Postives = 117/201 (58.21%), Query Frame = 1
Query:  238 IARAFSSDITPITATLFPGDGIGPEIAESVKQVFRTAEVPVDWEEHYVGTEIDPRTQSFLTWESLESVRRNKVGLKGPMATPIGKGHRSLNLTLRKELNLYANVRPCYSLPGYKTRYDDVNLITIRENTEGEYSGLEHQXXXXXXXXXXXXXXXXXXXXXXNMXFTMRRPWEEKSILHTQSNIMQKTDGLFLKWCPEVAQN 840
            + R F+  +   T TL PGDGIGPEI+ +V ++F  A+ P+ WEE  V     P  +  +  E+ ES+ +NK+GLKGP+ TPI  GH S+NL LRK  +LYANVRPC S+ GYKT Y DVN++TIRENTEGEYSG+EH                             R           ++NIM+ +DGLFL+ C EVA+N
Sbjct:   23 VTRGFAGGVK--TVTLIPGDGIGPEISAAVMKIFDAAKAPIQWEERNVAAIQGPGGKWMIPPEAKESMDKNKMGLKGPLKTPIAAGHPSMNLLLRKTFDLYANVRPCVSIEGYKTPYHDVNIVTIRENTEGEYSGIEHVIVDGVVQSIKLITEAASKRIAEFAFEYARNNHRSNVTAVHKANIMRMSDGLFLQKCREVAEN 221          
BLAST of EY659377 vs. ExPASy Swiss-Prot
Match: IDH3A_PONAB (Isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial OS=Pongo abelii GN=IDH3A PE=2 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 1.258e-40
Identity = 89/201 (44.28%), Postives = 117/201 (58.21%), Query Frame = 1
Query:  238 IARAFSSDITPITATLFPGDGIGPEIAESVKQVFRTAEVPVDWEEHYVGTEIDPRTQSFLTWESLESVRRNKVGLKGPMATPIGKGHRSLNLTLRKELNLYANVRPCYSLPGYKTRYDDVNLITIRENTEGEYSGLEHQXXXXXXXXXXXXXXXXXXXXXXNMXFTMRRPWEEKSILHTQSNIMQKTDGLFLKWCPEVAQN 840
            + R F+  +   T TL PGDGIGPEI+ +V ++F  A+ P+ WEE  V     P  +  +  E+ ES+ +NK+GLKGP+ TPI  GH S+NL LRK  +LYANVRPC S+ GYKT Y DVN++TIRENTEGEYSG+EH                             R           ++NIM+ +DGLFL+ C EVA+N
Sbjct:   23 VTRGFTGGVQ--TVTLIPGDGIGPEISAAVMKIFDAAKAPIQWEERNVTAIQGPGGKWMIPSEAKESMDKNKMGLKGPLKTPIAAGHPSMNLLLRKTFDLYANVRPCVSIEGYKTPYTDVNIVTIRENTEGEYSGIEHVIVDGVVQSIKLITEGASKRIAEFAFEYARNNHRSNVTAVHKANIMRMSDGLFLQKCREVAEN 221          
The following BLAST results are available for this feature:
BLAST of EY659377 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 66
Match NameE-valueIdentityDescription
IDH5_ARATH4.130e-8465.60Isocitrate dehydrogenase [NAD] catalytic subunit 5... [more]
IDH6_ARATH4.139e-7659.60Isocitrate dehydrogenase [NAD] catalytic subunit 6... [more]
LEU3_SOLTU2.966e-7460.163-isopropylmalate dehydrogenase, chloroplastic OS=... [more]
IDH3A_DROME1.344e-4245.73Probable isocitrate dehydrogenase [NAD] subunit al... [more]
IDH2_YEAST2.063e-4155.04Isocitrate dehydrogenase [NAD] subunit 2, mitochon... [more]
IDHA_DICDI2.535e-4145.23Isocitrate dehydrogenase [NAD] regulatory subunit ... [more]
IDH3A_RAT7.375e-4144.78Isocitrate dehydrogenase [NAD] subunit alpha, mito... [more]
IDH3A_MOUSE7.375e-4144.78Isocitrate dehydrogenase [NAD] subunit alpha, mito... [more]
IDH3A_BOVIN9.631e-4144.28Isocitrate dehydrogenase [NAD] subunit alpha, mito... [more]
IDH3A_PONAB1.258e-4044.28Isocitrate dehydrogenase [NAD] subunit alpha, mito... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C1-101-002-E03-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659377 ID=EY659377; Name=EY659377; organism=Citrus sinensis; type=EST; length=939bp
CCACGCGTCCGAAAAAAAAAAATAATAATAATAATAAAATTATATTCTCA
CCTTCAAAAGTTGCAATTTTTATTTTGCTTTTTTCTTTTTCTTTTTCATA
AAAATCACATCAAACGGAGAAGAAAAAAGAAGAAGAAGGATCAATCAATG
GCAACGCAGCTGCTGAGACGAGTCCTGGGAAGCCGATCGCGCCAGATCCT
CTCAACCACAAACCCCAACCCTAATTTAGCTTTGCCTATAGCCAGGGCCT
TCTCCTCCGATATTACTCCGATCACCGCCACTCTCTTTCCCGGCGACGGA
ATCGGCCCCGAGATCGCCGAGTCCGTTAAACAGGTATTTAGGACAGCTGA
AGTGCCAGTTGATTGGGAGGAGCATTATGTTGGGACTGAAATAGATCCTA
GAACACAAAGTTTTCTGACATGGGAAAGTTTAGAATCTGTGAGAAGGAAC
AAGGTGGGCTTGAAAGGGCCTATGGCAACACCAATTGGAAAGGGTCATCG
TTCATTGAATCTTACTTTGAGGAAAGAACTTAATTTGTATGCCAATGTTA
GGCCTTGCTACAGCCTCCCTGGGTATAAAACTCGCTATGATGATGTGAAT
CTTATCACTATCCGTGAGAACACAGAAGGAGAGTACAGTGGACTTGAACA
TCAAGTGGNTGAGAAGGTGTGGTTGAAAGTCTCAAAATCATTACTCGTCA
GGCTAGTTTGAGAAGTGCTGAATATGCNGTTCACTATGCGAAGACCATGG
GAAGAGAAGAGTATCTTGCATACACAAAGCAATATTATGCAGAAAACTGA
TGGGCTTTTTTTGAAGTGGTGTCCTGAAGTTGCCCAGAATACCCTGAGAT
AACATATGAAGAAAGTGTATCAACATTGCTGGATGATGCTTGGGAGAATC
CAACGGCTTCGATGGGTGGAATGGCTAACTCCATGGGAA
back to top