EY659356

Overview
NameEY659356
Unique NameEY659356
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length901
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY659356 vs. ExPASy Swiss-Prot
Match: U603_ARATH (UPF0603 protein At1g54780, chloroplastic OS=Arabidopsis thaliana GN=At1g54780 PE=1 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 1.372e-42
Identity = 96/192 (50.00%), Postives = 123/192 (64.06%), Query Frame = 3
Query:   57 METILSSPSISPFLNPKPSSSKTLFSPSLHAQQQRQSSLFCTKNITCSLKKH-NPQLLNPSLQVPRSWFAHAQQGXXXXXXXXXXXXXXXXYTNGNALASEFDVLTEGPPKDSYLVDDAGVISKVTKSDLKQLLSDLESRKNFHINFITVRKLTSKADAFEYADQVLEKWYPSVEEGITRALLCLVXVKRKG 629
            MET+LS  ++SP LNPKP S        LH  +    SL  +K  T S  KH + +   P     R+W   A+QG                   G ALASEF++L +GPPK++Y+VDDAGV+S+VTKSDLK+LLSDLE RK   +NFITVRKLTSKADAFEYADQVLEKWYPS+EEG  + ++ L+  +++G
Sbjct:    1 METLLSPRALSPPLNPKPLS--------LHQTKPTSHSLSLSKPTTFSGPKHLSTRFTKPE---SRNWLIDAKQGLAALALSLTLTFSPV----GTALASEFNILNDGPPKETYVVDDAGVLSRVTKSDLKKLLSDLEYRKKLRLNFITVRKLTSKADAFEYADQVLEKWYPSIEEGNNKGIVVLITSQKEG 177          

HSP 2 Score: 25.7942 bits (55), Expect = 1.372e-42
Identity = 10/14 (71.43%), Postives = 13/14 (92.86%), Query Frame = 1
Query:  688 ISENLPVLARDERH 729
            +SENLPVLA DE++
Sbjct:  198 VSENLPVLATDEKY 211          
BLAST of EY659356 vs. ExPASy Swiss-Prot
Match: U603_ORYSJ (UPF0603 protein Os05g0401100, chloroplastic OS=Oryza sativa subsp. japonica GN=Os05g0401100 PE=3 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 1.294e-36
Identity = 92/203 (45.32%), Postives = 116/203 (57.14%), Query Frame = 3
Query:   57 METILSSPSISPFLNPKPSSSKTLFSPSLHAQQQRQSSLFCTKNITCSLKKHNPQLLNPSLQVPR------------SWFAHAQQGXXXXXXXXXXXXXXXXYTNGNALASEFDVLTEGPPKDSYLVDDAGVISKVTKSDLKQLLSDLESRKNFHINFITVRKLTSKADAFEYADQVLEKWYPSVEEGITRALLCLVXVKRKG 629
            MET+LS    S  L+P   S K   SP+  A     S       ++C+L++  P    P   V              SW    Q G                     A+ASEFDVL  GPP+D+Y+VDDAGV+S+VTKSD+K+L+ DLESRKN  INFITVRKLTSKADAFEYADQVLEKWYP+VEEG  + ++ LV  +++G
Sbjct:    1 METLLSP---STLLSPLRGSKKKPASPAASASSSSSSP--ARSVVSCALRRQQP----PPQAVAAWRGDGGRGGGVGSWATFLQHGLAAAALSLAISMAPAP---APAVASEFDVLNGGPPEDTYVVDDAGVLSRVTKSDVKRLVRDLESRKNIRINFITVRKLTSKADAFEYADQVLEKWYPTVEEGNNKGIVVLVTSQKEG 191          

HSP 2 Score: 25.7942 bits (55), Expect = 1.294e-36
Identity = 10/14 (71.43%), Postives = 13/14 (92.86%), Query Frame = 1
Query:  688 ISENLPVLARDERH 729
            +SENLPVLA DE++
Sbjct:  212 VSENLPVLATDEKY 225          
BLAST of EY659356 vs. ExPASy Swiss-Prot
Match: U603_ORYSI (UPF0603 protein OsI_019212, chloroplastic OS=Oryza sativa subsp. indica GN=OsI_19898 PE=3 SV=2)

HSP 1 Score: 148.288 bits (373), Expect = 1.294e-36
Identity = 92/203 (45.32%), Postives = 116/203 (57.14%), Query Frame = 3
Query:   57 METILSSPSISPFLNPKPSSSKTLFSPSLHAQQQRQSSLFCTKNITCSLKKHNPQLLNPSLQVPR------------SWFAHAQQGXXXXXXXXXXXXXXXXYTNGNALASEFDVLTEGPPKDSYLVDDAGVISKVTKSDLKQLLSDLESRKNFHINFITVRKLTSKADAFEYADQVLEKWYPSVEEGITRALLCLVXVKRKG 629
            MET+LS    S  L+P   S K   SP+  A     S       ++C+L++  P    P   V              SW    Q G                     A+ASEFDVL  GPP+D+Y+VDDAGV+S+VTKSD+K+L+ DLESRKN  INFITVRKLTSKADAFEYADQVLEKWYP+VEEG  + ++ LV  +++G
Sbjct:    1 METLLSP---STLLSPLRGSKKKPASPAASASSSSSSP--ARSVVSCALRRQQP----PPQAVAAWRGDGGRGGGVGSWATFLQHGLAAAALSLAISMAPAP---APAVASEFDVLNGGPPEDTYVVDDAGVLSRVTKSDVKRLVRDLESRKNIRINFITVRKLTSKADAFEYADQVLEKWYPTVEEGNNKGIVVLVTSQKEG 191          

HSP 2 Score: 25.7942 bits (55), Expect = 1.294e-36
Identity = 10/14 (71.43%), Postives = 13/14 (92.86%), Query Frame = 1
Query:  688 ISENLPVLARDERH 729
            +SENLPVLA DE++
Sbjct:  212 VSENLPVLATDEKY 225          
The following BLAST results are available for this feature:
BLAST of EY659356 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
U603_ARATH1.372e-4250.00UPF0603 protein At1g54780, chloroplastic OS=Arabid... [more]
U603_ORYSJ1.294e-3645.32UPF0603 protein Os05g0401100, chloroplastic OS=Ory... [more]
U603_ORYSI1.294e-3645.32UPF0603 protein OsI_019212, chloroplastic OS=Oryza... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-101-002-C05-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659356 ID=EY659356; Name=EY659356; organism=Citrus sinensis; type=EST; length=901bp
CCACGCGTCCGCGGACGCGTGGGTTCCCCTCCATTTTCAATCTCTTCAAT
TCAGCCATGGAAACCATTCTCTCTTCTCCTTCAATCTCTCCATTTCTCAA
CCCAAAACCTTCTTCTTCGAAGACCCTTTTCTCACCTTCTCTACATGCGC
AGCAGCAAAGACAAAGTTCTCTTTTTTGCACCAAAAACATCACTTGTAGC
CTCAAAAAACACAACCCTCAGTTACTAAATCCATCTTTACAGGTACCCAG
AAGCTGGTTTGCTCATGCACAGCAAGGGCTGGCAGCTCTGGCTCTCTCTT
TGGCACTCAGTTTTAGCCCATTACTGTACACTAATGGCAATGCACTTGCT
TCTGAGTTTGATGTGCTCACTGAAGGCCCCCCAAAAGATTCCTATTTGGT
TGATGATGCAGGTGTGATTAGTAAAGTTACAAAATCTGATTTGAAGCAGC
TTTTGTCAGATTTGGAGTCGAGGAAGAACTTCCACATTAACTTCATCACT
GTTAGGAAGCTCACTAGCAAAGCTGATGCTTTTGAGTATGCTGACCAAGT
ATTAGAGAAGTGGTATCCTAGTGTTGAAGAGGGCATAACAAGGGCATTGT
TGTGCTTGGTACNAGTCAAAAGGAAGGGGCAGTCACAGGTGGTCCTGCAT
TTGTCAAAGCTGTTGATGAAAGAAGTCTTGATGCTACATATCTGAGAACC
TTCCTGTTTTGGCCAGGGATGAAAGACATGNAGCTGTTACACACTGCTAA
ACGCTATAGCTGCATCCATGACTTCCTGATCAGGTGTCCAAAATTTATGA
AAATAGCAGATCGACTTCAACCAGGGAGAGACGAGAGAAGGGGACATTCA
NCTTGTGTGGAGGCTTTGGGATGCTTTGCGTCCATGGACAAACTGGGTTG
T
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