EY659343
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of EY659343 vs. ExPASy Swiss-Prot
Match: RCA1_LARTR (Ribulose bisphosphate carboxylase/oxygenase activase 1, chloroplastic OS=Larrea tridentata GN=RCA1 PE=2 SV=1) HSP 1 Score: 224.942 bits (572), Expect = 4.314e-82 Identity = 115/158 (72.78%), Postives = 131/158 (82.91%), Query Frame = 2 Query: 125 PLSFNGSGAATS-VPSSSFFGTSLNKVSSRIPPSKVPSASFKITA-EADENKQTKQDRWKGLAYDESDDQQDITRGKGAVDSLFQAPMGTGTHYAVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLGVHITKNFMSLPNIKVHLILSIW*GKGQG 592 PLS NGSGA S VPS++FFG+SL K +++ P K S +FKI A E E++QT +D+WKGLAYD SDDQQDITRGKG VD+LFQAPM +GTHYAVMSSYDYISQGLR YNLDN +DG YIAPAFMDKL VHITKNF+SLPNIK+ LIL IW GKGQG Sbjct: 15 PLSLNGSGARASLVPSTAFFGSSLKKSAAKFP--KASSGNFKIVAQEISEDQQTDKDKWKGLAYDISDDQQDITRGKGMVDTLFQAPMQSGTHYAVMSSYDYISQGLRQYNLDNNMDGFYIAPAFMDKLVVHITKNFLSLPNIKIPLILGIWGGKGQG 170 HSP 2 Score: 64.3142 bits (155), Expect = 4.314e-82 Identity = 31/39 (79.49%), Postives = 32/39 (82.05%), Query Frame = 3 Query: 693 LIRQRYREASDIIKKGKMCLLLINDLDAGAGPMEGPPHY 809 LIRQRYREA+DIIKKGKMC L INDLDAGAG M G Y Sbjct: 205 LIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQY 243 HSP 3 Score: 59.3066 bits (142), Expect = 4.314e-82 Identity = 28/32 (87.50%), Postives = 29/32 (90.62%), Query Frame = 1 Query: 592 KSFQCELVFAKMGINPIMMSAGDX*SANAGEP 687 KSFQCELVFAKMGINPIMMSAG+ S NAGEP Sbjct: 171 KSFQCELVFAKMGINPIMMSAGELESGNAGEP 202
BLAST of EY659343 vs. ExPASy Swiss-Prot
Match: RCA2_LARTR (Ribulose bisphosphate carboxylase/oxygenase activase 2, chloroplastic OS=Larrea tridentata GN=RCA2 PE=2 SV=1) HSP 1 Score: 224.942 bits (572), Expect = 4.319e-82 Identity = 115/158 (72.78%), Postives = 131/158 (82.91%), Query Frame = 2 Query: 125 PLSFNGSGAATS-VPSSSFFGTSLNKVSSRIPPSKVPSASFKITA-EADENKQTKQDRWKGLAYDESDDQQDITRGKGAVDSLFQAPMGTGTHYAVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLGVHITKNFMSLPNIKVHLILSIW*GKGQG 592 PLS NGSGA S VPS++FFG+SL K +++ P K S +FKI A E E++QT +D+WKGLAYD SDDQQDITRGKG VD+LFQAPM +GTHYAVMSSYDYISQGLR YNLDN +DG YIAPAFMDKL VHITKNF+SLPNIK+ LIL IW GKGQG Sbjct: 15 PLSLNGSGARASLVPSTAFFGSSLKKSAAKFP--KASSGNFKIVAQEISEDQQTDKDKWKGLAYDISDDQQDITRGKGMVDTLFQAPMQSGTHYAVMSSYDYISQGLRQYNLDNNMDGFYIAPAFMDKLVVHITKNFLSLPNIKIPLILGIWGGKGQG 170 HSP 2 Score: 64.3142 bits (155), Expect = 4.319e-82 Identity = 31/39 (79.49%), Postives = 32/39 (82.05%), Query Frame = 3 Query: 693 LIRQRYREASDIIKKGKMCLLLINDLDAGAGPMEGPPHY 809 LIRQRYREA+DIIKKGKMC L INDLDAGAG M G Y Sbjct: 205 LIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQY 243 HSP 3 Score: 59.3066 bits (142), Expect = 4.319e-82 Identity = 28/32 (87.50%), Postives = 29/32 (90.62%), Query Frame = 1 Query: 592 KSFQCELVFAKMGINPIMMSAGDX*SANAGEP 687 KSFQCELVFAKMGINPIMMSAG+ S NAGEP Sbjct: 171 KSFQCELVFAKMGINPIMMSAGELESGNAGEP 202
BLAST of EY659343 vs. ExPASy Swiss-Prot
Match: RCA_MALDO (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Malus domestica GN=RCA PE=2 SV=1) HSP 1 Score: 229.565 bits (584), Expect = 2.751e-81 Identity = 111/156 (71.15%), Postives = 128/156 (82.05%), Query Frame = 2 Query: 125 PLSFNGSGAATSVPSSSFFGTSLNKVSSRIPPSKVPSASFKITAEADENKQTKQDRWKGLAYDESDDQQDITRGKGAVDSLFQAPMGTGTHYAVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLGVHITKNFMSLPNIKVHLILSIW*GKGQG 592 P + NGS ++ SVPSS+F G+SL KV+SR SKV S S +I A DE+KQT +DRWKGLA+D SDDQQDITRGKG VDSLFQAP G+GTH+A+MSSY+YIS GLR YN DN +DG YIAPAFMDKL VHITKNFM+LPN+KV LIL IW GKGQG Sbjct: 15 PPNLNGSSSSASVPSSTFLGSSLKKVNSRFTNSKVSSGSLRIVASVDEDKQTDKDRWKGLAFDTSDDQQDITRGKGKVDSLFQAPQGSGTHFAIMSSYEYISTGLRQYNFDNNMDGYYIAPAFMDKLVVHITKNFMTLPNMKVPLILGIWGGKGQG 170 HSP 2 Score: 62.003 bits (149), Expect = 2.751e-81 Identity = 29/39 (74.36%), Postives = 32/39 (82.05%), Query Frame = 3 Query: 693 LIRQRYREASDIIKKGKMCLLLINDLDAGAGPMEGPPHY 809 LIRQRYREA+DII+KGKMC L INDLDAGAG + G Y Sbjct: 205 LIRQRYREAADIIRKGKMCALFINDLDAGAGRLGGTTQY 243 HSP 3 Score: 54.299 bits (129), Expect = 2.751e-81 Identity = 26/32 (81.25%), Postives = 28/32 (87.50%), Query Frame = 1 Query: 592 KSFQCELVFAKMGINPIMMSAGDX*SANAGEP 687 KSFQCELVFAKM I+PIMMSAG+ S NAGEP Sbjct: 171 KSFQCELVFAKMRISPIMMSAGELESGNAGEP 202
BLAST of EY659343 vs. ExPASy Swiss-Prot
Match: RCA_PHAVU (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Phaseolus vulgaris GN=RCA1 PE=2 SV=1) HSP 1 Score: 219.164 bits (557), Expect = 2.282e-80 Identity = 112/159 (70.44%), Postives = 126/159 (79.25%), Query Frame = 2 Query: 128 LSFNGSGAATSVPSSSFFGTSLNKV-SSRIPPSKVPSASFKITA---EADENKQTKQDRWKGLAYDESDDQQDITRGKGAVDSLFQAPMGTGTHYAVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLGVHITKNFMSLPNIKVHLILSIW*GKGQG 592 L+ NGSG S PSS+FFGTSL KV SSR+P SK+ S SFKI A E +E +QT+ DRW+GLAYD SDDQQDITRGKG VDSLFQAPM GTHYAV+SS+ Y+S GLR YN DN DG YIAPAF+DKL VHI KNFM+LPNIKV LIL +W GKGQG Sbjct: 16 LNLNGSGGGASGPSSAFFGTSLKKVISSRVPNSKLTSGSFKIVAADKEIEETQQTEGDRWRGLAYDVSDDQQDITRGKGLVDSLFQAPMDAGTHYAVISSHKYLSAGLRQYNFDNIKDGFYIAPAFLDKLVVHIAKNFMTLPNIKVPLILGVWGGKGQG 174 HSP 2 Score: 64.3142 bits (155), Expect = 2.282e-80 Identity = 30/39 (76.92%), Postives = 33/39 (84.62%), Query Frame = 3 Query: 693 LIRQRYREASDIIKKGKMCLLLINDLDAGAGPMEGPPHY 809 LIRQRYREASD+IKKGKMC+L INDLDAGAG + G Y Sbjct: 209 LIRQRYREASDLIKKGKMCVLFINDLDAGAGRLGGTTQY 247 HSP 3 Score: 59.3066 bits (142), Expect = 2.282e-80 Identity = 28/32 (87.50%), Postives = 29/32 (90.62%), Query Frame = 1 Query: 592 KSFQCELVFAKMGINPIMMSAGDX*SANAGEP 687 KSFQCELVFAKMGINPIMMSAG+ S NAGEP Sbjct: 175 KSFQCELVFAKMGINPIMMSAGELESGNAGEP 206
BLAST of EY659343 vs. ExPASy Swiss-Prot
Match: RCA_PHAAU (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Phaseolus aureus GN=RCA PE=2 SV=2) HSP 1 Score: 218.394 bits (555), Expect = 7.100e-79 Identity = 114/159 (71.70%), Postives = 128/159 (80.50%), Query Frame = 2 Query: 128 LSFNGSGAATSVPSSSFFGTSLNK-VSSRIPPSKVPSASFKITA---EADENKQTKQDRWKGLAYDESDDQQDITRGKGAVDSLFQAPMGTGTHYAVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLGVHITKNFMSLPNIKVHLILSIW*GKGQG 592 L+ NGSGA S P+S+FFGTSL K V+SR+P SKV + SFKI A E +E++QT +DRWKGLAYD SDDQQDITRGKG VD LFQAPM GTHYAVMSSY+Y+S GLR LDN DG YIAPAF+DKL VHITKNFM+LPNIKV LIL IW GKGQG Sbjct: 16 LNLNGSGAGASAPTSAFFGTSLKKAVASRVPNSKVTNGSFKIVAAEKEIEESQQTNKDRWKGLAYDISDDQQDITRGKGMVDPLFQAPMDAGTHYAVMSSYEYLSTGLR--QLDNIKDGFYIAPAFLDKLVVHITKNFMTLPNIKVPLILGIWGGKGQG 172 HSP 2 Score: 60.077 bits (144), Expect = 7.100e-79 Identity = 28/39 (71.79%), Postives = 31/39 (79.49%), Query Frame = 3 Query: 693 LIRQRYREASDIIKKGKMCLLLINDLDAGAGPMEGPPHY 809 LIRQRYREA+D+I KGKMC L INDLDAGAG + G Y Sbjct: 207 LIRQRYREAADLIAKGKMCALFINDLDAGAGRLGGTTQY 245 HSP 3 Score: 59.3066 bits (142), Expect = 7.100e-79 Identity = 28/32 (87.50%), Postives = 29/32 (90.62%), Query Frame = 1 Query: 592 KSFQCELVFAKMGINPIMMSAGDX*SANAGEP 687 KSFQCELVFAKMGINPIMMSAG+ S NAGEP Sbjct: 173 KSFQCELVFAKMGINPIMMSAGELESGNAGEP 204
BLAST of EY659343 vs. ExPASy Swiss-Prot
Match: RCA_CUCSA (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Cucumis sativus PE=2 SV=1) HSP 1 Score: 209.149 bits (531), Expect = 4.884e-77 Identity = 104/163 (63.80%), Postives = 124/163 (76.07%), Query Frame = 2 Query: 104 SLMAAAVPLSFNGSGAATSVPSSSFFGTSLNKVSSRIPPSKVPSASFKITAEADENKQTKQDRWKGLAYDESDDQQDITRGKGAVDSLFQAPMGTGTHYAVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLGVHITKNFMSLPNIKVHLILSIW*GKGQG 592 S + A + N S VP+S+F G+ L KVSSR SK+ + +FKI AE DE KQT++D+W+GLA+D SDDQQDITRGKG D LFQAPMGTGTH AV+SSY+YIS GLR Y+ DN +DG YIAPAFMDKL VHI KNF++LPNIKV LIL +W GKGQG Sbjct: 6 STIGAVNRTTLNNSNYGGLVPNSAFLGSRL-KVSSRFTTSKMVTGNFKIVAEQDEEKQTEKDKWRGLAFDTSDDQQDITRGKGLADPLFQAPMGTGTHNAVLSSYEYISAGLRDYSYDNNVDGFYIAPAFMDKLTVHIVKNFLTLPNIKVPLILGVWGGKGQG 167 HSP 2 Score: 63.1586 bits (152), Expect = 4.884e-77 Identity = 30/39 (76.92%), Postives = 32/39 (82.05%), Query Frame = 3 Query: 693 LIRQRYREASDIIKKGKMCLLLINDLDAGAGPMEGPPHY 809 LIRQRYREA+DIIKKGKMC L INDLDAGAG + G Y Sbjct: 202 LIRQRYREAADIIKKGKMCCLFINDLDAGAGRLGGTTQY 240 HSP 3 Score: 59.3066 bits (142), Expect = 4.884e-77 Identity = 28/32 (87.50%), Postives = 29/32 (90.62%), Query Frame = 1 Query: 592 KSFQCELVFAKMGINPIMMSAGDX*SANAGEP 687 KSFQCELVFAKMGINPIMMSAG+ S NAGEP Sbjct: 168 KSFQCELVFAKMGINPIMMSAGELESGNAGEP 199
BLAST of EY659343 vs. ExPASy Swiss-Prot
Match: RCA_ORYSJ (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Oryza sativa subsp. japonica GN=RCA PE=1 SV=2) HSP 1 Score: 190.274 bits (482), Expect = 9.284e-72 Identity = 102/153 (66.67%), Postives = 115/153 (75.16%), Query Frame = 2 Query: 146 GAATSVPSSSFFGTSLNKVSSRIPPSKVPSAS---FKITA-EADENKQTKQDRWKGLAYDESDDQQDITRGKGAVDSLFQAPMGTGTHYAVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLGVHITKNFMSLPNIKVHLILSIW*GKGQG 592 GA S P++ F G L K + S++ FK+ A E DE KQT QDRWKGLAYD SDDQQDITRGKG VDSLFQAP G GTH AV+SSY+Y+SQGLRTY+ DNT+ G YIAPAFMDKL VHI+KNFM+LPNIKV LIL IW GKGQG Sbjct: 10 GAPASTPTN-FLGKKLKKQVTSAVNYHGKSSNINRFKVMAKELDEGKQTDQDRWKGLAYDISDDQQDITRGKGFVDSLFQAPTGDGTHEAVLSSYEYLSQGLRTYDFDNTMGGFYIAPAFMDKLVVHISKNFMTLPNIKVPLILGIWGGKGQG 161 HSP 2 Score: 64.3142 bits (155), Expect = 9.284e-72 Identity = 31/39 (79.49%), Postives = 32/39 (82.05%), Query Frame = 3 Query: 693 LIRQRYREASDIIKKGKMCLLLINDLDAGAGPMEGPPHY 809 LIRQRYREA+DIIKKGKMC L INDLDAGAG M G Y Sbjct: 196 LIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQY 234 HSP 3 Score: 59.3066 bits (142), Expect = 9.284e-72 Identity = 28/32 (87.50%), Postives = 29/32 (90.62%), Query Frame = 1 Query: 592 KSFQCELVFAKMGINPIMMSAGDX*SANAGEP 687 KSFQCELVFAKMGINPIMMSAG+ S NAGEP Sbjct: 162 KSFQCELVFAKMGINPIMMSAGELESGNAGEP 193
BLAST of EY659343 vs. ExPASy Swiss-Prot
Match: RCAB_HORVU (Ribulose bisphosphate carboxylase/oxygenase activase B, chloroplastic OS=Hordeum vulgare GN=RCAB PE=2 SV=1) HSP 1 Score: 187.193 bits (474), Expect = 1.972e-68 Identity = 101/156 (64.74%), Postives = 115/156 (73.72%), Query Frame = 2 Query: 146 GAATSVPSSSFFGTSL-------NKVSSRIPPSKVPSASFKITAEADENKQTKQDRWKGLAYDESDDQQDITRGKGAVDSLFQAPMGTGTHYAVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLGVHITKNFMSLPNIKVHLILSIW*GKGQG 592 GA S P+ F G + NK+ SR+ +V +A E D+ KQT DRWKGLAYD SDDQQDITRGKG VDSLFQAPMG GTH A++SSY+YISQGLR Y+ DNT+DGLYIAPAFMDKL VH+ KNFM+LPNIKV LIL IW GKGQG Sbjct: 10 GAPASTPTI-FLGKKVKNYYHGGNKMKSRVV--RVMAAK----KELDQGKQTDADRWKGLAYDISDDQQDITRGKGIVDSLFQAPMGDGTHEAILSSYEYISQGLRKYDFDNTMDGLYIAPAFMDKLIVHLAKNFMTLPNIKVPLILGIWGGKGQG 158 HSP 2 Score: 62.3882 bits (150), Expect = 1.972e-68 Identity = 30/39 (76.92%), Postives = 31/39 (79.49%), Query Frame = 3 Query: 693 LIRQRYREASDIIKKGKMCLLLINDLDAGAGPMEGPPHY 809 LIRQRYREA+DII KGKMC L INDLDAGAG M G Y Sbjct: 192 LIRQRYREAADIINKGKMCCLFINDLDAGAGRMGGTTQY 230 HSP 3 Score: 53.1434 bits (126), Expect = 1.972e-68 Identity = 27/32 (84.38%), Postives = 28/32 (87.50%), Query Frame = 1 Query: 592 KSFQCELVFAKMGINPIMMSAGDX*SANAGEP 687 KSFQCELVFAKMGINPIMMSAG+ S N GEP Sbjct: 159 KSFQCELVFAKMGINPIMMSAGELESGN-GEP 189
BLAST of EY659343 vs. ExPASy Swiss-Prot
Match: RCAA_HORVU (Ribulose bisphosphate carboxylase/oxygenase activase A, chloroplastic OS=Hordeum vulgare GN=RCAA PE=2 SV=1) HSP 1 Score: 178.718 bits (452), Expect = 5.664e-68 Identity = 95/152 (62.50%), Postives = 112/152 (73.68%), Query Frame = 2 Query: 146 GAATSVPSSSFFGTSLNK-VSSRIPPSKVPSASFKITAEADENKQTKQ--DRWKGLAYDESDDQQDITRGKGAVDSLFQAPMGTGTHYAVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLGVHITKNFMSLPNIKVHLILSIW*GKGQG 592 GA S P++ F G L K V+S + S + + T A EN K+ D+WKGLAYD SDDQQDITRGKG VDSLFQAP G GTH AV+SSY+Y+SQGLR Y+ DNT+ G YIAPAFMDKL VH++KNFM+LPNIK+ LIL IW GKGQG Sbjct: 10 GAPASTPTN-FLGKKLKKQVTSAVNYHGKSSKANRFTVMAAENIDEKRNTDKWKGLAYDISDDQQDITRGKGIVDSLFQAPTGHGTHEAVLSSYEYVSQGLRKYDFDNTMGGFYIAPAFMDKLVVHLSKNFMTLPNIKIPLILGIWGGKGQG 160 HSP 2 Score: 63.1586 bits (152), Expect = 5.664e-68 Identity = 30/39 (76.92%), Postives = 32/39 (82.05%), Query Frame = 3 Query: 693 LIRQRYREASDIIKKGKMCLLLINDLDAGAGPMEGPPHY 809 LIRQRYREA+D+IKKGKMC L INDLDAGAG M G Y Sbjct: 195 LIRQRYREAADMIKKGKMCCLFINDLDAGAGRMGGTTQY 233 HSP 3 Score: 59.3066 bits (142), Expect = 5.664e-68 Identity = 28/32 (87.50%), Postives = 29/32 (90.62%), Query Frame = 1 Query: 592 KSFQCELVFAKMGINPIMMSAGDX*SANAGEP 687 KSFQCELVFAKMGINPIMMSAG+ S NAGEP Sbjct: 161 KSFQCELVFAKMGINPIMMSAGELESGNAGEP 192
BLAST of EY659343 vs. ExPASy Swiss-Prot
Match: RCA_ARATH (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Arabidopsis thaliana GN=RCA PE=1 SV=2) HSP 1 Score: 213.772 bits (543), Expect = 3.665e-67 Identity = 113/171 (66.08%), Postives = 130/171 (76.02%), Query Frame = 2 Query: 110 MAAAV---------PLSFNGSGA-ATSVPSSSFFGTSLNKVSSRIPPSKVPSASFKITAEADENKQTKQDRWKGLAYDESDDQQDITRGKGAVDSLFQAPMGTGTHYAVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLGVHITKNFMSLPNIKVHLILSIW*GKGQG 592 MAAAV PLS NGSG+ A S P+S+F G + VS +K + SFK+ A E+KQT DRW+GLAYD SDDQQDITRGKG VDS+FQAPMGTGTH+AV+SSY+Y+SQGLR YNLDN +DG YIAPAFMDKL VHITKNF++LPNIKV LIL IW GKGQG Sbjct: 1 MAAAVSTVGAINRAPLSLNGSGSGAVSAPASTFLGKKVVTVSRFAQSNKKSNGSFKVLA-VKEDKQTDGDRWRGLAYDTSDDQQDITRGKGMVDSVFQAPMGTGTHHAVLSSYEYVSQGLRQYNLDNMMDGFYIAPAFMDKLVVHITKNFLTLPNIKVPLILGIWGGKGQG 170 HSP 2 Score: 63.5438 bits (153), Expect = 3.665e-67 Identity = 30/39 (76.92%), Postives = 32/39 (82.05%), Query Frame = 3 Query: 693 LIRQRYREASDIIKKGKMCLLLINDLDAGAGPMEGPPHY 809 LIRQRYREA+D+IKKGKMC L INDLDAGAG M G Y Sbjct: 205 LIRQRYREAADLIKKGKMCCLFINDLDAGAGRMGGTTQY 243 The following BLAST results are available for this feature:
BLAST of EY659343 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 19
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Sequences
The
following sequences are available for this feature:
EST sequence >EY659343 ID=EY659343; Name=EY659343; organism=Citrus sinensis; type=EST; length=923bpback to top |