EY659326

Overview
NameEY659326
Unique NameEY659326
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length894
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY659326 vs. ExPASy Swiss-Prot
Match: HSDD2_ARATH (3beta-hydroxysteroid-dehydrogenase/decarboxylase isoform 2 OS=Arabidopsis thaliana GN=3BETAHSD/D2 PE=2 SV=2)

HSP 1 Score: 233.802 bits (595), Expect = 1.015e-60
Identity = 123/244 (50.41%), Postives = 155/244 (63.52%), Query Frame = 2
Query:    2 RTFDCSKAKDLLGYMPIVPLEEGIKRTVDSYSHLRAENQLKRVGPSKASVLLGSGRVADTLLWKDKKWTLTAVLILVAIYYIFIVPGYTIITAFSKXXXXXXXXXVIHSFLPEKMYAASSLL*IFGYTLEKIPASSFHLSDEKSLRLAHSVASSWNTSITVLKSLSKGTEWMXXXXXXXXXXXXXXXXXXXXXXXFIKGIPLAFVIFYMYEKKEQEIDSIVLEALSIGGKFKSNIARKFLTSKK 733
            RTFD +KAKD LGY P+VPL+EGI+RT+DS+SHL A +Q KR GPSKAS +LG G+VADTLLWKD K TL A+ IL++IYY F+  G T++TA SK          +H  LPEK         IFGYT+EKIPAS FHLS + S  L+ SV SSWNT++  L+SL +G +W                        F+ G+P+AF+ F +YEKKEQEIDSIV+   S   K KS++  K   SKK
Sbjct:  328 RTFDSTKAKDRLGYAPVVPLQEGIRRTIDSFSHLTAGSQSKREGPSKASRILGGGKVADTLLWKDLKQTLIAIFILISIYYNFVATGSTVVTALSKALLVASVFLFLHGILPEK---------IFGYTVEKIPASQFHLSKDSSHDLSLSVISSWNTTVKALRSLCQGNDWSFFFKVVFVLLALSLAGAISLHSIFVIGLPIAFLAFLVYEKKEQEIDSIVVSFKSFACKHKSDVYEKLFGSKK 562          
BLAST of EY659326 vs. ExPASy Swiss-Prot
Match: HSDD3_ARATH (3beta-hydroxysteroid-dehydrogenase/decarboxylase isoform 3 OS=Arabidopsis thaliana GN=3BETAHSD/D3 PE=2 SV=2)

HSP 1 Score: 103.219 bits (256), Expect = 2.069e-21
Identity = 66/217 (30.41%), Postives = 99/217 (45.62%), Query Frame = 2
Query:    2 RTFDCSKAKDLLGYMPIVPLEEGIKRTVDSYSHLRAENQLKRVGPSKASVLLGSGRVADTLLWKDKKWTLTAVLILVAIYYIFIVPGYTIITAFSKXXXXXXXXXVIHSFLPEKMYAASSLL*IFGYTLEKIPASSFHLSDEKSLRLAHSVASSWNTSITVLKSLSKGTEWMXXXXXXXXXXXXXXXXXXXXXXXFIKGIPLAFVIFYMYEKKEQEI 652
            RTF+C+ AK  LGY P+V LE+GI  T+  +S    E     +  S A  LLG G+VAD LLW+++K T  + L+L   YY F   G T  ++ ++            SF+P K         IFG+ + KIP   F +S+     L+  +   WN  +   KSLS G +W+                           +  +F  F++YE+ E E+
Sbjct:  324 RTFNCNAAKKHLGYTPVVTLEDGIASTLQWFSR-DLEKSDDTIIQSTADQLLGCGKVADILLWRNEKKTFVSFLVLNLFYYWFFFSGNTFTSSAAQLLFIFAVALYGVSFVPSK---------IFGFQVNKIPPWRFEISESAVRDLSSDIVVVWNQGVRSFKSLSSGGDWIKFFKIAGSLYLLKLIVSRSLAAFLFTVMSFSFTGFFIYEQYELEL 530          
BLAST of EY659326 vs. ExPASy Swiss-Prot
Match: HSDD1_ARATH (3beta-hydroxysteroid-dehydrogenase/decarboxylase isoform 1 OS=Arabidopsis thaliana GN=3BETAHSD/D1 PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 7.358e-19
Identity = 55/118 (46.61%), Postives = 70/118 (59.32%), Query Frame = 2
Query:    2 RTFDCSKAKDLLGYMPIVPLEEGIKRTVDSYSHLRAENQLKRVGPSKASVLLGSGRVADTLLWKDKKWTLTAVLILVAIYYIFIV---PGYTIITAFSKXXXXXXXXXVIHSFLPEKM 346
            RTFD SKAKD LGY P+VPL+EGIKRT+DS+SHL+A+NQ K               V +T+ W  KK TL A++IL+ +Y+ F+        IITA SK          I+  LPEKM
Sbjct:  328 RTFDSSKAKDRLGYSPVVPLQEGIKRTIDSFSHLKAQNQPKT-------------EVTETIQW--KKQTLIAIVILITLYHNFVATTGSSSVIITAVSKVLLVSSIFMFINGILPEKM 430          
The following BLAST results are available for this feature:
BLAST of EY659326 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
HSDD2_ARATH1.015e-6050.413beta-hydroxysteroid-dehydrogenase/decarboxylase i... [more]
HSDD3_ARATH2.069e-2130.413beta-hydroxysteroid-dehydrogenase/decarboxylase i... [more]
HSDD1_ARATH7.358e-1946.613beta-hydroxysteroid-dehydrogenase/decarboxylase i... [more]
back to top
Properties
Property NameValue
Genbank descriptionCS00-C1-101-008-H08-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659326 ID=EY659326; Name=EY659326; organism=Citrus sinensis; type=EST; length=894bp
CAGAACTTTTGATTGTTCAAAAGCGAAGGATCTACTTGGCTACATGCCCA
TTGTGCCCCTCGAGGAGGGCATAAAGAGGACAGTTGACTCGTATTCACAC
TTGAGAGCTGAAAATCAGTTAAAGAGAGTAGGGCCATCCAAAGCTTCTGT
ACTTCTTGGTAGTGGAAGAGTTGCCGACACGCTACTCTGGAAAGATAAAA
AGTGGACTCTCACTGCAGTATTAATTCTGGTGGCAATTTACTACATCTTT
ATTGTACCTGGTTATACCATCATTACTGCATTTTCAAAGCTCCTCTTGTT
GATGTTAATCTTCTTGGTAATCCACAGCTTTTTACCAGAGAAAATGTATG
CTGCCTCGTCTCTTCTTTGAATATTTGGATATACACTTGAGAAAATTCCT
GCATCAAGTTTCCACTTGTCTGACGAGAAATCGCTACGGCTTGCTCATTC
AGTAGCCTCATCATGGAATACTTCTATTACTGTTTTAAAATCTCTTAGTA
AGGGTACTGAATGGATGCTATTCCTCAAGGCTGCTATCTCCCTATTAATA
CTAAGCTTGCTTGGGGCCATATCACTTCAGAGCCTATTCATCAAAGGAAT
TCCCTTAGCATTTGTGATTTTCTACATGTATGAGAAAAAAGAGCAAGAAA
TTGATTCCATAGTACTCGAGGCTCTTTCCATCGGTGGCAAGTTTAAATCT
AATATTGCCAGAAAGTTTCTTACTTCAAAGAAGATGACNTAATAGATAGT
GACCCTGAGTGATGGCATCTTCATTTCTTATTGATTAGAGCTCTTCACTT
AATGCCCTGGTTTCGCTTTTATTATATCTTGTACCGATTCTGTCTGTCAT
TCTTTAAACTATGGTAAGCAGCTATTTAACTTTTATTTTCTACG
back to top