EY659272
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of EY659272 vs. ExPASy Swiss-Prot
Match: RECQ_BACSU (Probable ATP-dependent DNA helicase recQ OS=Bacillus subtilis GN=recQ PE=3 SV=1) HSP 1 Score: 99.3673 bits (246), Expect = 5.850e-25 Identity = 47/117 (40.17%), Postives = 81/117 (69.23%), Query Frame = 1 Query: 433 LLRLVYGYDSFRDGQLEAIKMVLD-KKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVALMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADF 777 LL +GY+ FR GQ EAI++V + +++T ++PTG GKS+CYQIPA++ G T+V+ PL++LM DQ+ L I+ +++S+Q +E+ E + ++ GA K+ +++PER + +F Sbjct: 8 LLAHYFGYEKFRSGQDEAIRLVTEARQNTACIMPTGGGKSICYQIPALMFEGTTIVISPLISLMKDQVDALEEAGINAAYINSTQSNQEIYERLNGLKEGAYKLFYITPERLTSIEF 124 HSP 2 Score: 36.5798 bits (83), Expect = 5.850e-25 Identity = 13/23 (56.52%), Postives = 17/23 (73.91%), Query Frame = 2 Query: 803 ISLVGGDEAHCVSEWAHNFPPLY 871 + LV DEAHC+S+W H+F P Y Sbjct: 133 VPLVAIDEAHCISQWGHDFRPSY 155
BLAST of EY659272 vs. ExPASy Swiss-Prot
Match: RECQ_HAEIN (ATP-dependent DNA helicase recQ OS=Haemophilus influenzae GN=recQ PE=3 SV=1) HSP 1 Score: 97.8265 bits (242), Expect = 1.677e-24 Identity = 52/116 (44.83%), Postives = 74/116 (63.79%), Query Frame = 1 Query: 433 LLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVALMIDQLRHLPP-VIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADF 777 +L+ V+GY SFR GQ E I L+ + ++V+ TG GKSLCYQIPA+ GLTLV+ PL++LM DQ+ L I FL+SSQ E+ + + G +K+L+VSPE+ + F Sbjct: 19 VLKSVFGYQSFRKGQEEVINAALNGQDALVVMATGNGKSLCYQIPALCFDGLTLVISPLISLMKDQVDQLQANGIEADFLNSSQTLEQQQQVQNKLISGQLKLLYVSPEKVMTNSF 134 HSP 2 Score: 36.5798 bits (83), Expect = 1.677e-24 Identity = 13/32 (40.62%), Postives = 19/32 (59.38%), Query Frame = 2 Query: 776 FCNIYCYFIISLVGGDEAHCVSEWAHNFPPLY 871 F + Y + + DEAHC+S+W H+F P Y Sbjct: 134 FFQLISYSKVCFIAIDEAHCISQWGHDFRPEY 165
BLAST of EY659272 vs. ExPASy Swiss-Prot
Match: RECQ_PASMU (ATP-dependent DNA helicase recQ OS=Pasteurella multocida GN=recQ PE=3 SV=1) HSP 1 Score: 96.2857 bits (238), Expect = 2.839e-24 Identity = 51/116 (43.97%), Postives = 73/116 (62.93%), Query Frame = 1 Query: 433 LLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVALMIDQL-RHLPPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADF 777 +L V+GY SFR GQ E I L K +++++ TG GKSLCYQIPA+ GLTLV+ PL++LM DQ+ + L I +L+SSQ E + + G +K+L+VSPE+ + F Sbjct: 29 VLHAVFGYQSFRKGQEEVIDATLMGKDSLVIMATGNGKSLCYQIPALCFEGLTLVISPLISLMKDQVDQLLANGIEADYLNSSQTFTEQQQVQNKLMSGTLKLLYVSPEKVMTTSF 144 HSP 2 Score: 37.3502 bits (85), Expect = 2.839e-24 Identity = 14/32 (43.75%), Postives = 21/32 (65.62%), Query Frame = 2 Query: 776 FCNIYCYFIISLVGGDEAHCVSEWAHNFPPLY 871 F ++ + +S V DEAHC+S+W H+F P Y Sbjct: 144 FFHLISHCKVSFVAIDEAHCISQWGHDFRPEY 175
BLAST of EY659272 vs. ExPASy Swiss-Prot
Match: RECQ_ECOLI (ATP-dependent DNA helicase recQ OS=Escherichia coli (strain K12) GN=recQ PE=1 SV=5) HSP 1 Score: 97.0561 bits (240), Expect = 1.060e-23 Identity = 50/117 (42.74%), Postives = 77/117 (65.81%), Query Frame = 1 Query: 430 RLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVALMIDQLRHLPP-VIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADF 777 ++L+ +GY FR GQ E I VL + ++V+PTG GKSLCYQIPA++L GLT+VV PL++LM DQ+ L + L+S+Q E+ E + + G I++L+++PER + +F Sbjct: 15 QVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLLNGLTVVVSPLISLMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLDNF 131 HSP 2 Score: 34.6538 bits (78), Expect = 1.060e-23 Identity = 12/21 (57.14%), Postives = 16/21 (76.19%), Query Frame = 2 Query: 809 LVGGDEAHCVSEWAHNFPPLY 871 L+ DEAHC+S+W H+F P Y Sbjct: 142 LLAVDEAHCISQWGHDFRPEY 162
BLAST of EY659272 vs. ExPASy Swiss-Prot
Match: RECQ_SALTY (ATP-dependent DNA helicase recQ OS=Salmonella typhimurium GN=recQ PE=3 SV=3) HSP 1 Score: 93.2041 bits (230), Expect = 1.474e-22 Identity = 48/117 (41.03%), Postives = 76/117 (64.96%), Query Frame = 1 Query: 430 RLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVALMIDQL-RHLPPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADF 777 ++L+ +GY FR GQ I L + ++V+PTG GKSLCYQIPA++L GLT+VV PL++LM DQ+ + L + L+S+Q E+ E + + G I++L+++PER + +F Sbjct: 15 QVLQETFGYQQFRPGQEAIIDTALSGRDCLVVMPTGGGKSLCYQIPALLLDGLTVVVSPLISLMKDQVDQLLANGVAAACLNSTQSREQQLEVMAGCRTGQIRLLYIAPERLMLDNF 131 HSP 2 Score: 34.6538 bits (78), Expect = 1.474e-22 Identity = 12/21 (57.14%), Postives = 16/21 (76.19%), Query Frame = 2 Query: 809 LVGGDEAHCVSEWAHNFPPLY 871 L+ DEAHC+S+W H+F P Y Sbjct: 142 LLAVDEAHCISQWGHDFRPEY 162
BLAST of EY659272 vs. ExPASy Swiss-Prot
Match: RECQ4_HUMAN (ATP-dependent DNA helicase Q4 OS=Homo sapiens GN=RECQL4 PE=1 SV=1) HSP 1 Score: 90.1225 bits (222), Expect = 2.466e-22 Identity = 47/111 (42.34%), Postives = 69/111 (62.16%), Query Frame = 1 Query: 451 GYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMIL----PGLTLVVCPLVALMIDQLRHLPPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNA 771 G+ +FR GQ A+ +L ST+LVLPTGAGKSLCYQ+PA++ P LTLVV PL++LM DQ+ LPP + + S ++ ++ I+ + VL ++PE + A Sbjct: 477 GHQAFRPGQERAVMRILSGISTLLVLPTGAGKSLCYQLPALLYSRRSPCLTLVVSPLLSLMDDQVSGLPPCLKAACIHSGMTRKQRESVLQKIRAAQVHVLMLTPEALVGA 587 HSP 2 Score: 36.965 bits (84), Expect = 2.466e-22 Identity = 12/18 (66.67%), Postives = 16/18 (88.89%), Query Frame = 2 Query: 821 DEAHCVSEWAHNFPPLYM 874 DEAHC+S+W+HNF P Y+ Sbjct: 605 DEAHCLSQWSHNFRPCYL 622
BLAST of EY659272 vs. ExPASy Swiss-Prot
Match: RECQ4_MOUSE (ATP-dependent DNA helicase Q4 OS=Mus musculus GN=Recql4 PE=2 SV=2) HSP 1 Score: 90.8929 bits (224), Expect = 4.173e-22 Identity = 49/106 (46.23%), Postives = 66/106 (62.26%), Query Frame = 1 Query: 451 GYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMIL----PGLTLVVCPLVALMIDQLRHLPPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPE 756 GY +FR GQ AI +L ST+LVLPTGAGKSLCYQ+PA++ P LTLVV PL++LM DQ+ LP + L S ++ ++ ++ + VL VSPE Sbjct: 494 GYRAFRPGQERAIMRILSGISTLLVLPTGAGKSLCYQLPALLYAQRSPCLTLVVSPLLSLMDDQVSDLPSCLKAACLHSGMTKKQRESVLKKVRAAQVHVLIVSPE 599 HSP 2 Score: 35.4242 bits (80), Expect = 4.173e-22 Identity = 11/18 (61.11%), Postives = 15/18 (83.33%), Query Frame = 2 Query: 821 DEAHCVSEWAHNFPPLYM 874 DE HC+S+W+HNF P Y+ Sbjct: 627 DEVHCLSQWSHNFRPCYL 644
BLAST of EY659272 vs. ExPASy Swiss-Prot
Match: RECQ_SYNY3 (ATP-dependent DNA helicase recQ OS=Synechocystis sp. (strain PCC 6803) GN=recQ PE=3 SV=1) HSP 1 Score: 87.4261 bits (215), Expect = 6.676e-19 Identity = 53/127 (41.73%), Postives = 78/127 (61.42%), Query Frame = 1 Query: 409 ASNENLGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVALMIDQL-----RHLPPVIHGGFLSSSQRPEEVAETIRLIQVG--AIKVLFVSPERFLN 768 A ++L LR ++GYD FR Q E I +L ++ ++VLPTG GKS+C+Q+PA++ GLTLVV PLVALM DQ+ ++LP LS +R + L Q+G +K+L++SPE L+ Sbjct: 2 ADRQSLEEALRRIWGYDHFRYPQGEVIDCLLARRDCLVVLPTGGGKSICFQLPALLGEGLTLVVSPLVALMEDQVQSLRRQNLPAACLHSQLSRPERKQV------LYQLGQQQLKLLYLSPETLLS 122 HSP 2 Score: 28.1054 bits (61), Expect = 6.676e-19 Identity = 9/17 (52.94%), Postives = 12/17 (70.59%), Query Frame = 2 Query: 821 DEAHCVSEWAHNFPPLY 871 DEAHC+ +W +F P Y Sbjct: 142 DEAHCLVQWGDSFRPAY 158
BLAST of EY659272 vs. ExPASy Swiss-Prot
Match: RECQ1_RAT (ATP-dependent DNA helicase Q1 OS=Rattus norvegicus GN=Recql PE=2 SV=1) HSP 1 Score: 84.3445 bits (207), Expect = 8.634e-19 Identity = 47/112 (41.96%), Postives = 68/112 (60.71%), Query Frame = 1 Query: 433 LLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVALMIDQLRHLPPV-IHGGFLSSSQRPEEV--AETIRLIQVGAIKVLFVSPER 759 +LR V+ FR QLE + + +K LV+PTG GKSLCYQ+PA+ G TLV+CPL++LM DQL L + I L+SS E V T + + +K+++V+PE+ Sbjct: 82 VLRDVFKLQKFRPLQLETVNATMARKDIFLVMPTGGGKSLCYQLPALCSDGFTLVICPLISLMEDQLMVLQQLGISATMLNSSSSKEHVKCVHTEMMNKNSHLKLIYVTPEK 193 HSP 2 Score: 30.8018 bits (68), Expect = 8.634e-19 Identity = 11/20 (55.00%), Postives = 13/20 (65.00%), Query Frame = 2 Query: 812 VGGDEAHCVSEWAHNFPPLY 871 V DE HC S+W H+F P Y Sbjct: 216 VAVDEVHCCSQWGHDFRPDY 235
BLAST of EY659272 vs. ExPASy Swiss-Prot
Match: RECQ5_HUMAN (ATP-dependent DNA helicase Q5 OS=Homo sapiens GN=RECQL5 PE=1 SV=2) HSP 1 Score: 79.337 bits (194), Expect = 1.112e-18 Identity = 46/121 (38.02%), Postives = 74/121 (61.16%), Query Frame = 1 Query: 436 LRLVYGYDSFRDGQLEAIKMVLDK--KSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVALMIDQLRHLPPV-----IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADF 777 L+ V+G+DSF+ E+ M + K K + +PTGAGKSLCYQ+PA++ G+T+VV PL+AL+ DQ+ HL + LS+ +R E +A+ R + K+L+++PE ++ F Sbjct: 20 LKKVFGFDSFKTPLQESATMAVVKGNKDVFVCMPTGAGKSLCYQLPALLAKGITIVVSPLIALIQDQVDHLLTLKVRVSSLNSKLSAQERKELLADLER--EKPQTKILYITPEMAASSSF 138 HSP 2 Score: 35.4242 bits (80), Expect = 1.112e-18 Identity = 13/25 (52.00%), Postives = 19/25 (76.00%), Query Frame = 2 Query: 800 IISLVGGDEAHCVSEWAHNFPPLYM 874 ++S + DEAHCVS+W H+F P Y+ Sbjct: 150 LLSYLVVDEAHCVSQWGHDFRPDYL 174 The following BLAST results are available for this feature:
BLAST of EY659272 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 27
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Sequences
The
following sequences are available for this feature:
EST sequence >EY659272 ID=EY659272; Name=EY659272; organism=Citrus sinensis; type=EST; length=924bpback to top |