EY659260

Overview
NameEY659260
Unique NameEY659260
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length889
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY659260_ssr439 microsatellite EY659260_ssr439:439..450. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
[Close]
BLAST of EY659260 vs. ExPASy Swiss-Prot
Match: CWC15_EMENI (Pre-mRNA-splicing factor cwc15 OS=Emericella nidulans GN=cwc15 PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.428e-14
Identity = 37/57 (64.91%), Postives = 46/57 (80.70%), Query Frame = 2 
Query:  590 GNPLLNNPTSFNVKRRWDDDVVFKNQARG-ETKTXKRFINDTIXNDFHRIFLQKYMK 757
            GNPLLN P+ FN+KRRWDDDVVFKNQARG E K  K F+ND + +DFH+ F+ KY++
Sbjct:  177 GNPLLN-PSDFNIKRRWDDDVVFKNQARGTEDKRGKEFVNDLLRSDFHKKFMSKYVR 232
[Close]
BLAST of EY659260 vs. ExPASy Swiss-Prot
Match: CW15A_XENLA (Protein CWC15 homolog A OS=Xenopus laevis GN=cwc15-A PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.693e-13
Identity = 38/68 (55.88%), Postives = 49/68 (72.06%), Query Frame = 2 
Query:  581 LLVGNPLLN-------NPTSFNVKRRWDDDVVFKNQARG--ETKTXKRFINDTIXNDFHRIFLQKYMK 757
            +L GNPLLN       +  SF VKRRWDDDVVFKN A+G  E K  KRF+NDT+ ++FH+ F++KY+K
Sbjct:  161 ILSGNPLLNLTGPAAQSQASFKVKRRWDDDVVFKNCAKGVDEMKKQKRFVNDTLRSEFHKKFMEKYIK 228
[Close]
BLAST of EY659260 vs. ExPASy Swiss-Prot
Match: CWC15_XENTR (Protein CWC15 homolog OS=Xenopus tropicalis GN=cwc15 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 6.000e-13
Identity = 37/67 (55.22%), Postives = 49/67 (73.13%), Query Frame = 2 
Query:  581 LLVGNPLLN------NPTSFNVKRRWDDDVVFKNQARG--ETKTXKRFINDTIXNDFHRIFLQKYMK 757
            +L GNPLLN      +  +F VKRRWDDDVVFKN A+G  E K  KRF+NDT+ ++FH+ F++KY+K
Sbjct:  161 ILSGNPLLNLTGPAQSVAAFKVKRRWDDDVVFKNCAKGVDEMKKDKRFVNDTLRSEFHKKFMEKYIK 227
[Close]
BLAST of EY659260 vs. ExPASy Swiss-Prot
Match: CWC15_RAT (Protein CWC15 homolog OS=Rattus norvegicus GN=Cwc15 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.280e-12
Identity = 36/67 (53.73%), Postives = 48/67 (71.64%), Query Frame = 2 
Query:  581 LLVGNPLLN------NPTSFNVKRRWDDDVVFKNQARG--ETKTXKRFINDTIXNDFHRIFLQKYMK 757
            +L GNPLLN         +F VKRRWDDDVVFKN A+G  + K  KRF+NDT+ ++FH+ F++KY+K
Sbjct:  163 ILSGNPLLNLTGPSQPQANFKVKRRWDDDVVFKNCAKGIDDQKKDKRFVNDTLRSEFHKKFMEKYIK 229
[Close]
BLAST of EY659260 vs. ExPASy Swiss-Prot
Match: CWC15_PONAB (Protein CWC15 homolog OS=Pongo abelii GN=CWC15 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.280e-12
Identity = 36/67 (53.73%), Postives = 48/67 (71.64%), Query Frame = 2 
Query:  581 LLVGNPLLN------NPTSFNVKRRWDDDVVFKNQARG--ETKTXKRFINDTIXNDFHRIFLQKYMK 757
            +L GNPLLN         +F VKRRWDDDVVFKN A+G  + K  KRF+NDT+ ++FH+ F++KY+K
Sbjct:  163 ILSGNPLLNLTGPSQPQANFKVKRRWDDDVVFKNCAKGVDDQKKDKRFVNDTLRSEFHKKFMEKYIK 229
[Close]
BLAST of EY659260 vs. ExPASy Swiss-Prot
Match: CWC15_MOUSE (Protein CWC15 homolog OS=Mus musculus GN=Cwc15 PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.280e-12
Identity = 36/67 (53.73%), Postives = 48/67 (71.64%), Query Frame = 2 
Query:  581 LLVGNPLLN------NPTSFNVKRRWDDDVVFKNQARG--ETKTXKRFINDTIXNDFHRIFLQKYMK 757
            +L GNPLLN         +F VKRRWDDDVVFKN A+G  + K  KRF+NDT+ ++FH+ F++KY+K
Sbjct:  163 ILSGNPLLNLTGPSQPQANFKVKRRWDDDVVFKNCAKGIDDQKKDKRFVNDTLRSEFHKKFMEKYIK 229
[Close]
BLAST of EY659260 vs. ExPASy Swiss-Prot
Match: CWC15_HUMAN (Protein CWC15 homolog OS=Homo sapiens GN=CWC15 PE=1 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 2.280e-12
Identity = 36/67 (53.73%), Postives = 48/67 (71.64%), Query Frame = 2 
Query:  581 LLVGNPLLN------NPTSFNVKRRWDDDVVFKNQARG--ETKTXKRFINDTIXNDFHRIFLQKYMK 757
            +L GNPLLN         +F VKRRWDDDVVFKN A+G  + K  KRF+NDT+ ++FH+ F++KY+K
Sbjct:  163 ILSGNPLLNLTGPSQPQANFKVKRRWDDDVVFKNCAKGVDDQKKDKRFVNDTLRSEFHKKFMEKYIK 229
[Close]
BLAST of EY659260 vs. ExPASy Swiss-Prot
Match: CWC15_BOVIN (Protein CWC15 homolog OS=Bos taurus GN=CWC15 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.280e-12
Identity = 36/67 (53.73%), Postives = 48/67 (71.64%), Query Frame = 2 
Query:  581 LLVGNPLLN------NPTSFNVKRRWDDDVVFKNQARG--ETKTXKRFINDTIXNDFHRIFLQKYMK 757
            +L GNPLLN         +F VKRRWDDDVVFKN A+G  + K  KRF+NDT+ ++FH+ F++KY+K
Sbjct:  165 ILSGNPLLNLTGPSQPQANFKVKRRWDDDVVFKNCAKGVDDQKKDKRFVNDTLRSEFHKKFMEKYIK 231
[Close]
BLAST of EY659260 vs. ExPASy Swiss-Prot
Match: CW15B_XENLA (Protein CWC15 homolog B OS=Xenopus laevis GN=cwc15-B PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.978e-12
Identity = 36/70 (51.43%), Postives = 49/70 (70.00%), Query Frame = 2 
Query:  581 LLVGNPLLN-------NPTSFNVKRRWDDDVVFKNQARG----ETKTXKRFINDTIXNDFHRIFLQKYMK 757
            +L GNPLLN       +  SF VKRRWDDDVVFKN A+G    + +  KRF+NDT+ ++FH+ F++KY+K
Sbjct:  161 ILSGNPLLNLTGPAAQSQASFKVKRRWDDDVVFKNCAKGVDEMKKRQDKRFVNDTLRSEFHKKFMEKYVK 230
[Close]
BLAST of EY659260 vs. ExPASy Swiss-Prot
Match: CWC15_DANRE (Protein CWC15 homolog OS=Danio rerio GN=cwc15 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 8.664e-12
Identity = 36/77 (46.75%), Postives = 50/77 (64.94%), Query Frame = 2 
Query:  581 LLVGNPLLN----------------NPTSFNVKRRWDDDVVFKNQARG--ETKTXKRFINDTIXNDFHRIFLQKYMK 757
            +L GNPLLN                   +F+VKRRWDDDVVFKN A+G  E++  KRF+NDT+ ++FH+ F++KY+K
Sbjct:  167 ILSGNPLLNLAGQQQQQQQQQQQTQTKNTFSVKRRWDDDVVFKNCAKGVDESRKEKRFVNDTLRSEFHKKFMEKYVK 243
The following BLAST results are available for this feature:
BLAST of EY659260 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
CWC15_EMENI1.428e-1464.91Pre-mRNA-splicing factor cwc15 OS=Emericella nidul... [more]
CW15A_XENLA2.693e-1355.88Protein CWC15 homolog A OS=Xenopus laevis GN=cwc15... [more]
CWC15_XENTR6.000e-1355.22Protein CWC15 homolog OS=Xenopus tropicalis GN=cwc... [more]
CWC15_RAT2.280e-1253.73Protein CWC15 homolog OS=Rattus norvegicus GN=Cwc1... [more]
CWC15_PONAB2.280e-1253.73Protein CWC15 homolog OS=Pongo abelii GN=CWC15 PE=... [more]
CWC15_MOUSE2.280e-1253.73Protein CWC15 homolog OS=Mus musculus GN=Cwc15 PE=... [more]
CWC15_HUMAN2.280e-1253.73Protein CWC15 homolog OS=Homo sapiens GN=CWC15 PE=... [more]
CWC15_BOVIN2.280e-1253.73Protein CWC15 homolog OS=Bos taurus GN=CWC15 PE=2 ... [more]
CW15B_XENLA2.978e-1251.43Protein CWC15 homolog B OS=Xenopus laevis GN=cwc15... [more]
CWC15_DANRE8.664e-1246.75Protein CWC15 homolog OS=Danio rerio GN=cwc15 PE=2... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-008-B07-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659260 ID=EY659260; Name=EY659260; organism=Citrus sinensis; type=EST; length=889bp
CTCGAACCTCGATCGAACAAAGAATGGATCGGTCAAAATAAGGTAATCTA
GAGATTGTAATTGGAACGACATGACGACGGCAGCTCGACCCACATGGGCT
CCCGCAAAAGGTGGTAATGAGCAAGGCGGTACTCGAATTTTCGGGCCGTC
GCAGAAGTACTCATCGAGGGACCTTGCAGCTCATACAAATTTGAAGCCTA
TAAAAGAAGGACAAGATACCAAAGATGAATTACAGAAAAGGAACCTCCGG
CATGAGCTAGAAGAGCGTGAACGGAGACATTTCTCATCTAAGGATAAGTC
CTACAATGATGACAGAGATCGTCGGAAGAGTAGCCATCTTTTGTTGGAAG
GGACAAAGAGGGATATTGAGGACCGTGCTGCTCCACGTAGCATAGATGCT
GATGATTCTGATGTCGAAGTCAAAAGTGATGATGAGAGTGATGATGATGA
CGACGATGATGAGGATGACACTGAAGCACTTTTGGCTGAGCTTGAACTAA
TAAAGAAGGAAAGAGCGGAGGAGAAGCTCCGGAAGGAAAAAGAACAGTGG
GAAGAAGAGGCTAAAGCCAAGGAATCAGAGCTTCTTGTAGGAAATCCATT
GCTGAATAATCCAACATCCTTTAATGTGAAAAGAAGGTGGGATGACGATG
TGGTTTTCAAGAACCAAGCCCGTGGTGAAACCAAGACTNCCAAGCGCTTC
ATCAATGACACTATCANGAATGACTTCCACAGGATATTCTTACAGAAATA
CATGAAGTAGCTTCGCTAAAGTAATTCTGAGGTGAAGGCCAAGTTTTACT
GCTTCAAATCAAGAAAAGACTTGGNTTAAATNCTNNGTTGNATATCATTG
ACTCTGGGTTTGAAATTGAGGCTACCATGTATAAGAGCA
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