EY659252

Overview
NameEY659252
Unique NameEY659252
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length441
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY659252 vs. ExPASy Swiss-Prot
Match: LHTL6_ARATH (Lysine histidine transporter-like 6 OS=Arabidopsis thaliana GN=At1g25530 PE=2 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 2.700e-25
Identity = 53/90 (58.89%), Postives = 63/90 (70.00%), Query Frame = 3
Query:    3 RSAYVAFTLFVGVXXXXXXXXXXXXXXXXXXXXSYFLPSVMWLVIKKPKRFSPKWIINWASIFIGVFIMLASTIGGFRNIVADASTYSFY 272
            R+ YVAFTLF+GV                    S+FLPS+MWL+IKKP+RFS  W +NW SI +GVFIMLASTIGG RNI+AD+STYSFY
Sbjct:  350 RTIYVAFTLFIGVSFPFFGDLLGFFGGFGFAPTSFFLPSIMWLIIKKPRRFSVTWFVNWISIIVGVFIMLASTIGGLRNIIADSSTYSFY 439          
BLAST of EY659252 vs. ExPASy Swiss-Prot
Match: LHTL1_ARATH (Lysine histidine transporter-like 1 OS=Arabidopsis thaliana GN=At1g48640 PE=3 SV=2)

HSP 1 Score: 83.9593 bits (206), Expect = 2.992e-16
Identity = 38/91 (41.76%), Postives = 52/91 (57.14%), Query Frame = 3
Query:    3 RSAYVAFTLFVGVXXXXXXXXXXXXXXXXXXXXSYFLPSVMWLVIKKPKRFSPKWIINWASIFIGVFIMLASTIGGFRNIVADASTYSFYT 275
            R+ YVA T+F+G+                    SYFLP +MWL+I KPKRFS  W  NW  I +GV +M+ S+IGG R I+  +  YSF++
Sbjct:  363 RNVYVALTMFIGIMIPFFGGLLAFFGGFAFAPTSYFLPCIMWLLIYKPKRFSLSWWTNWVCIVLGVVLMILSSIGGLRQIIIQSKDYSFFS 453          
BLAST of EY659252 vs. ExPASy Swiss-Prot
Match: LHT2_ARATH (Lysine histidine transporter 2 OS=Arabidopsis thaliana GN=LHT2 PE=1 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 1.939e-15
Identity = 36/91 (39.56%), Postives = 50/91 (54.95%), Query Frame = 3
Query:    3 RSAYVAFTLFVGVXXXXXXXXXXXXXXXXXXXXSYFLPSVMWLVIKKPKRFSPKWIINWASIFIGVFIMLASTIGGFRNIVADASTYSFYT 275
            RS YVAFT+ V +                    +Y+LP +MWLV+KKPKRF   W  NW  I +GV + + + IGG R I+ +A TY F++
Sbjct:  351 RSLYVAFTMIVAICVPFFGGLLGFFGGFAFAPTTYYLPCIMWLVLKKPKRFGLSWTANWFCIIVGVLLTILAPIGGLRTIIINAKTYKFFS 441          
BLAST of EY659252 vs. ExPASy Swiss-Prot
Match: LHTL2_ARATH (Lysine histidine transporter-like 2 OS=Arabidopsis thaliana GN=At1g67640 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.642e-14
Identity = 34/91 (37.36%), Postives = 49/91 (53.85%), Query Frame = 3
Query:    3 RSAYVAFTLFVGVXXXXXXXXXXXXXXXXXXXXSYFLPSVMWLVIKKPKRFSPKWIINWASIFIGVFIMLASTIGGFRNIVADASTYSFYT 275
            R+ YVAFT+FV +                    +Y+LP +MWL IKKPK++   W INW  I +GV + + + IGG R I+  A  Y F++
Sbjct:  351 RTLYVAFTMFVAICIPFFGGLLGFFGGFAFAPTTYYLPCIMWLCIKKPKKYGLSWCINWFCIVVGVILTILAPIGGLRTIIISAKNYEFFS 441          
BLAST of EY659252 vs. ExPASy Swiss-Prot
Match: LHT1_ARATH (Lysine histidine transporter 1 OS=Arabidopsis thaliana GN=LHT1 PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 2.144e-14
Identity = 38/91 (41.76%), Postives = 49/91 (53.85%), Query Frame = 3
Query:    3 RSAYVAFTLFVGVXXXXXXXXXXXXXXXXXXXXSYFLPSVMWLVIKKPKRFSPKWIINWASIFIGVFIMLASTIGGFRNIVADASTYSFYT 275
            R+ YVA T+FVG+                    +YFLP V+WL I KPK++S  W  NW  I  G+F+M+ S IGG R IV  A  Y FY+
Sbjct:  356 RNFYVAATMFVGMTFPFFGGLLAFFGGFAFAPTTYFLPCVIWLAIYKPKKYSLSWWANWVCIVFGLFLMVLSPIGGLRTIVIQAKGYKFYS 446          
BLAST of EY659252 vs. ExPASy Swiss-Prot
Match: LHTL5_ARATH (Lysine histidine transporter-like 5 OS=Arabidopsis thaliana GN=At1g71680 PE=2 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 2.621e-12
Identity = 33/91 (36.26%), Postives = 47/91 (51.65%), Query Frame = 3
Query:    3 RSAYVAFTLFVGVXXXXXXXXXXXXXXXXXXXXSYFLPSVMWLVIKKPKRFSPKWIINWASIFIGVFIMLASTIGGFRNIVADASTYSFYT 275
            RS YVA    V V                    SYFLP ++WL++K+PKRFS  W  +W +I  G+ I + + IGG R+I+  A TY  ++
Sbjct:  358 RSTYVALICLVAVCIPFFGGLLGFFGGLVFSSTSYFLPCIIWLIMKRPKRFSAHWWCSWVAIVTGISIAILAPIGGMRHIILSARTYKLFS 448          
The following BLAST results are available for this feature:
BLAST of EY659252 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
LHTL6_ARATH2.700e-2558.89Lysine histidine transporter-like 6 OS=Arabidopsis... [more]
LHTL1_ARATH2.992e-1641.76Lysine histidine transporter-like 1 OS=Arabidopsis... [more]
LHT2_ARATH1.939e-1539.56Lysine histidine transporter 2 OS=Arabidopsis thal... [more]
LHTL2_ARATH1.642e-1437.36Lysine histidine transporter-like 2 OS=Arabidopsis... [more]
LHT1_ARATH2.144e-1441.76Lysine histidine transporter 1 OS=Arabidopsis thal... [more]
LHTL5_ARATH2.621e-1236.26Lysine histidine transporter-like 5 OS=Arabidopsis... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-101-008-A11-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659252 ID=EY659252; Name=EY659252; organism=Citrus sinensis; type=EST; length=441bp
CTCGATCTGCTTATGTAGCATTTACACTATTCGTCGGAGTAACCTTCCCA
TTCTTTGGAGATCTTCTTGGTTTCTTTGGCGGATTTGGCTTTACACCCAC
TTCATATTTTCTTCCCAGTGTAATGTGGCTGGTAATCAAGAAACCAAAGC
GATTCAGCCCCAAATGGATCATCAATTGGGCTTCCATATTCATCGGGGTG
TTCATTATGTTGGCATCAACGATTGGAGGGTTTCGAAATATTGTGGCGGA
CGCCTCTACGTACAGTTTCTATACTTAATTTTTGATGATATGTTACCCAG
TATTAATAATTAATTATACAATTTAGGTTGAGTTGCAAAAACTCATCTTC
ATTGTGATGTTTTTGGCATGAAAGACTCTGTACTTTTCAGCAAGAAATTA
ATTAATCACTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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