EY659240

Overview
NameEY659240
Unique NameEY659240
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length888
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY659240_ssr479 microsatellite EY659240_ssr479:479..502. BLAST: Citrus ESTs to Prunus persica proteins V1
EY659240_ssr505 microsatellite EY659240_ssr505:505..514. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig7468 contig Csv1_Contig7468:1..888. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY659240 vs. ExPASy Swiss-Prot
Match: ILL3_ORYSJ (IAA-amino acid hydrolase ILR1-like 3 OS=Oryza sativa subsp. japonica GN=ILL3 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.267e-12
Identity = 33/56 (58.93%), Postives = 44/56 (78.57%), Query Frame = 2
Query:  716 QVIEMQAAVHQCSATIDFMEEKMXHYPGTVNDEKMYEHXQRVXASMVGEPNVHLTP 883
            +VIE QAAV++C+A +DFME+K+  YP TVNDE+MY H + V  SM+GE NV L+P
Sbjct:  286 EVIEGQAAVNRCTAAVDFMEDKLPPYPATVNDEEMYAHAKAVAESMLGEANVKLSP 341          
BLAST of EY659240 vs. ExPASy Swiss-Prot
Match: ILL4_ORYSJ (IAA-amino acid hydrolase ILR1-like 4 OS=Oryza sativa subsp. japonica GN=ILL4 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.470e-11
Identity = 32/56 (57.14%), Postives = 43/56 (76.79%), Query Frame = 2
Query:  716 QVIEMQAAVHQCSATIDFMEEKMXHYPGTVNDEKMYEHXQRVXASMVGEPNVHLTP 883
            +VIE QAAV++C+A +DFME+K+  YP TVNDE MY H + V  SM+GE NV ++P
Sbjct:  281 EVIEGQAAVNRCTAAVDFMEDKLRPYPATVNDEGMYAHAKAVAESMLGEANVTVSP 336          
BLAST of EY659240 vs. ExPASy Swiss-Prot
Match: ILL5_ARATH (IAA-amino acid hydrolase ILR1-like 5 OS=Arabidopsis thaliana GN=ILL5 PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.274e-11
Identity = 34/46 (73.91%), Postives = 37/46 (80.43%), Query Frame = -3
Query:   41 SGRFTAVIKGKGGHAAMPQDTRDPVLAASFAILTLQHIVSRETDPL 178
            SGRF A I GKGGHAA+PQ   DPVLAAS  IL+LQH+VSRE DPL
Sbjct:  215 SGRFKATISGKGGHAALPQFAIDPVLAASNVILSLQHLVSREADPL 260          
BLAST of EY659240 vs. ExPASy Swiss-Prot
Match: ILL1_ARATH (IAA-amino acid hydrolase ILR1-like 1 OS=Arabidopsis thaliana GN=ILL1 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 7.294e-11
Identity = 32/45 (71.11%), Postives = 38/45 (84.44%), Query Frame = -3
Query:   44 SGRFTAVIKGKGGHAAMPQDTRDPVLAASFAILTLQHIVSRETDP 178
            +G F AVI GKGGHAA+PQ T DPV+AAS  +L+LQH+VSRETDP
Sbjct:  217 AGAFEAVITGKGGHAAIPQHTIDPVVAASSIVLSLQHLVSRETDP 261          
The following BLAST results are available for this feature:
BLAST of EY659240 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
ILL3_ORYSJ2.267e-1258.93IAA-amino acid hydrolase ILR1-like 3 OS=Oryza sati... [more]
ILL4_ORYSJ1.470e-1157.14IAA-amino acid hydrolase ILR1-like 4 OS=Oryza sati... [more]
ILL5_ARATH3.274e-1173.91IAA-amino acid hydrolase ILR1-like 5 OS=Arabidopsi... [more]
ILL1_ARATH7.294e-1171.11IAA-amino acid hydrolase ILR1-like 1 OS=Arabidopsi... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-101-004-H10-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659240 ID=EY659240; Name=EY659240; organism=Citrus sinensis; type=EST; length=888bp
CACACTCCAACAATAAACCCAACTGTGACTACCCTGGCCTCAAGGGATCT
GTCTCTCTTGAAACTATATGTTGGAGTGTGAGGATTGCAAAGGATGCTGC
AAGAACAGGATCTCTGGTATCTTGGGGCATGGCGGCATGTCCACCTTTTC
CTTTAATCACGGCTGTAAACCTCCCAGAACCAGCTAGTAAAGGACCAGGT
AGTCACAGTTGGGTTTATTGTTGCGGGCCAAGCAGGAAATATAATCCCTG
AGATCGTGAGATTTGGAGGCACTTTCCGTAGCTTGACTACAGAAGGTCTG
TTATATCTTGAGCAAAGAATCAAAGAGGTAAAATTATTTGAGGTTGCATA
TCAATGATACAATGTATTTCTTAGCAGTATTTGCATAATATAATTCATCA
AATTCGCATGAGCTCTAAATAATAATGATTTGCTTCAAATGTAGCTGAAA
GAGTAGACTCCCTTTCAAGGCTGTGATCATATATATATATATATATATAT
ATACATATATATATTTATTACATAAGATTATTGCTCAAGAGTACAACTCA
TATTACATGAGATTACAACTGATATTTACAAATCAAACTATTACTAGAAT
TAGTAAGCCTGCCCAGATTTTTACTCTCTCTAATATTCGAGGGACGTTTA
CTCCACTCACAGAAGAAAACTGCCTTAACTCAAATTGAGGTCATAGAAAT
AGCACTTATTGTTATCAGGTCATAGAAATGCAAGCAGCAGTTCATCAGTG
TAGTGCAACAATAGACTTCATGGAAGAAAAAATGANGCATTATCCGGGCA
CTGTNAATGATGAAAAAATGTATGAACACCNGCAGAGGGTCNGCGCATCC
ATGGTTGGAGAGCCAAACGTGCATCTTACTCCAGNTGA
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