EY659216
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of EY659216 vs. ExPASy Swiss-Prot
Match: RR1_SPIOL (30S ribosomal protein S1, chloroplastic OS=Spinacia oleracea GN=RPS1 PE=1 SV=1) HSP 1 Score: 318.931 bits (816), Expect = 1.644e-86 Identity = 163/174 (93.68%), Postives = 170/174 (97.70%), Query Frame = 1 Query: 49 EVDEEQSRLVLSNRKAMADSQAQLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTPGDMIRNPKLVFEKAEEMAQTFRQRIAQAEAMARADMLRFQPESGLTLNSDGILGPLSPDLPADGLDLTDISPA 570 EVDEEQSRLV+SNRKAMADSQAQLGIGSVV GTVQSLKPYGAFIDIGGINGLLHVSQISHDRV+DIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTPGDMIRNPKLVFEKAEEMAQTFRQRIAQAEAMARADMLRFQPESGLTL+SDGILGPL+ DLPA+GLDL+ + PA Sbjct: 235 EVDEEQSRLVMSNRKAMADSQAQLGIGSVVTGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVSDIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTPGDMIRNPKLVFEKAEEMAQTFRQRIAQAEAMARADMLRFQPESGLTLSSDGILGPLTSDLPAEGLDLSVVPPA 408
BLAST of EY659216 vs. ExPASy Swiss-Prot
Match: RS1_SYNP6 (30S ribosomal protein S1 OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=rpsA PE=1 SV=4) HSP 1 Score: 156.377 bits (394), Expect = 1.411e-37 Identity = 73/129 (56.59%), Postives = 104/129 (80.62%), Query Frame = 1 Query: 49 EVDEEQSRLVLSNRKAMADSQA-QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTPGDMIRNPKLVFEKAEEMAQTFRQRIAQ 432 EVDE+++RLVLS+R+A+ + + +L +G VV+G V+ +KPYGAFIDIGG++GLLH+S+ISHD + +V D +KVMI+ D ERGR+SLSTK+LEP PGDM+RNP++V+EKAEEMA +R+++ Q Sbjct: 170 EVDEDRNRLVLSHRRALVERKMNRLEVGEVVVGAVRGIKPYGAFIDIGGVSGLLHISEISHDHIETPHSVFNVNDEVKVMIIDLDAERGRISLSTKQLEPEPGDMVRNPEVVYEKAEEMAAQYREKLKQ 298
BLAST of EY659216 vs. ExPASy Swiss-Prot
Match: RS1A_SYNY3 (30S ribosomal protein S1 homolog A OS=Synechocystis sp. (strain PCC 6803) GN=rps1A PE=3 SV=1) HSP 1 Score: 143.28 bits (360), Expect = 1.236e-33 Identity = 72/134 (53.73%), Postives = 103/134 (76.87%), Query Frame = 1 Query: 49 EVDEEQSRLVLSNRKAMADSQAQ-LGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTPGDMIRNPKLVFEKAEEMAQTFRQ-RIAQAEAM 444 EVDEE++RLVLS+R+A+ + + L + VV+G+V+ +KPYGAFIDIGG++GLLH+S+ISHD + +V D +KVMI+ D ERGR+SLSTK+LEP PG M+++ LV E A+EMA+ FRQ R+A+A+ + Sbjct: 169 EVDEERNRLVLSHRRALVERKMNGLEVAQVVVGSVRGIKPYGAFIDIGGVSGLLHISEISHDHIDTPHSVFNVNDEIKVMIIDLDAERGRISLSTKQLEPEPGAMLKDRDLVNEMADEMAEIFRQKRLAEAQGI 302
BLAST of EY659216 vs. ExPASy Swiss-Prot
Match: RS1_LEULA (40S ribosomal protein S1 OS=Leuconostoc lactis GN=rps1 PE=2 SV=2) HSP 1 Score: 95.5153 bits (236), Expect = 2.956e-19 Identity = 53/112 (47.32%), Postives = 74/112 (66.07%), Query Frame = 1 Query: 49 EVDEEQSRLVLSNRKAMADSQ---------AQLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTPGD 357 E+D +RL+LS RKA+A + ++L +G VV GTV L +GAF+D+GG++GL+HVS+ISHDRV + A VL GD + V IL+ D E+GR+SLS K + P D Sbjct: 197 EIDPANARLILS-RKAVAAQELAAQLAEVFSKLSVGEVVEGTVARLTDFGAFVDLGGVDGLVHVSEISHDRVKNPADVLTKGDKVDVKILALDTEKGRISLSIKATQRGPWD 307 HSP 2 Score: 72.0182 bits (175), Expect = 3.500e-12 Identity = 43/105 (40.95%), Postives = 65/105 (61.90%), Query Frame = 1 Query: 52 VDEEQSRLVLS----NRKAMADSQAQLGIGSVVIGTVQSLKPYGAFIDI-GGINGLLHVSQISHDRVADIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTP 351 +D E+ R+ LS R ++ Q+ GSV+ GTV+ +K +GAF++I GI GL+HVSQIS+ R+ + + VL+ GD ++V +L R+SLS K LE P Sbjct: 287 LDTEKGRISLSIKATQRGPWDEAADQIAAGSVLEGTVKRVKDFGAFVEILPGIEGLVHVSQISNKRIENPSEVLKSGDKVQVKVLDIKPAEERISLSMKALEEKP 391
BLAST of EY659216 vs. ExPASy Swiss-Prot
Match: RS1_SYNE7 (30S ribosomal protein S1 OS=Synechococcus elongatus (strain PCC 7942) GN=rpsA PE=3 SV=1) HSP 1 Score: 91.6633 bits (226), Expect = 4.269e-18 Identity = 45/127 (35.43%), Postives = 79/127 (62.20%), Query Frame = 1 Query: 49 EVDEEQSRLVLSNRKAMADSQA-QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTPGDMIRNPKLVFEKAEEMAQTFRQRI 426 EV+ +LVLS R+A + ++ +G ++ G V LKP+G F+D+GG LL ++QIS VAD+ + + GD ++ ++++ D +GR+SLSTK LE PG+++ N + A + A+ R+++ Sbjct: 166 EVNRADKKLVLSERQAARTALVREIEVGQLINGKVTGLKPFGVFVDLGGATALLPINQISQKFVADVGAIFKIGDPIQALVVAIDNTKGRISLSTKVLENHPGEILENVAELQASAADRAERARKQL 292
BLAST of EY659216 vs. ExPASy Swiss-Prot
Match: RS1H_BACSU (30S ribosomal protein S1 homolog OS=Bacillus subtilis GN=ypfD PE=1 SV=1) HSP 1 Score: 91.6633 bits (226), Expect = 4.269e-18 Identity = 48/113 (42.48%), Postives = 72/113 (63.72%), Query Frame = 1 Query: 49 EVDEEQSRLVLSNRKAMADSQAQ--------LGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTPGDMI 363 E+D +++R++LS+R + QA L +GSV+ G VQ L +GAF+DIGGI+GL+H+SQ+SH V + V++ G +KV +LS DR+ R+SLS K P P + I Sbjct: 154 ELDRDKNRVILSHRAVVESEQANKKQELLQSLEVGSVLDGKVQRLTDFGAFVDIGGIDGLVHISQLSHSHVEKPSDVVEEGQEVKVKVLSVDRDNERISLSIKDTLPGPWNQI 266 HSP 2 Score: 71.2478 bits (173), Expect = 5.970e-12 Identity = 41/105 (39.05%), Postives = 62/105 (59.05%), Query Frame = 1 Query: 52 VDEEQSRLVLSNRKAMADSQAQLGI----GSVVIGTVQSLKPYGAFIDI-GGINGLLHVSQISHDRVADIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTP 351 VD + R+ LS + + Q+G G V+ GTVQ L +GAF++I G+ GL+H+SQIS+ + VL+ G T+KV +L + R+SLS ++LE TP Sbjct: 244 VDRDNERISLSIKDTLPGPWNQIGEKVKPGDVLEGTVQRLVSFGAFVEILPGVEGLVHISQISNKHIGTPHEVLEEGQTVKVKVLDVNENEERISLSMRELEETP 348
BLAST of EY659216 vs. ExPASy Swiss-Prot
Match: RS1H_BACC1 (30S ribosomal protein S1 homolog OS=Bacillus cereus (strain ATCC 10987) GN=BCE_1625 PE=3 SV=1) HSP 1 Score: 89.7373 bits (221), Expect = 1.622e-17 Identity = 48/113 (42.48%), Postives = 75/113 (66.37%), Query Frame = 1 Query: 49 EVDEEQSRLVLSNRKAMA---DSQAQLGI-----GSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTPGDMI 363 E+D E++R++LS++ + DS+ + I G VV GTVQ L +GAF+++GG++GL+H+SQISH+RV + VL+ G +KV +LS D + R+SLS K +P P + I Sbjct: 155 ELDREKNRVILSHKAVVELELDSKKKEAISSLKEGDVVEGTVQRLTDFGAFVNVGGVDGLVHISQISHERVEQPSEVLEQGQKVKVKVLSVDADTQRISLSIKAAQPGPWENI 267
BLAST of EY659216 vs. ExPASy Swiss-Prot
Match: RS1B_SYNY3 (30S ribosomal protein S1 homolog B OS=Synechocystis sp. (strain PCC 6803) GN=rps1b PE=3 SV=1) HSP 1 Score: 83.5741 bits (205), Expect = 1.163e-15 Identity = 43/119 (36.13%), Postives = 72/119 (60.50%), Query Frame = 1 Query: 49 EVDEEQSRLVLSNRKAM-ADSQAQLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTPGDMIRNPKLVFEKAEEM 402 E +++ ++LVL+ R+ A+S ++ G++ G V ++PYG F++I G+ GLLHVSQ+S RV + T+ G + V + D + R+SLST+ LE PG+++ EK +EM Sbjct: 167 EANQDNNKLVLTQRRIQQAESMGKIAAGNIYEGKVAKIQPYGVFVEIEGVTGLLHVSQVSGTRVDSLNTLFAFGQAISVYVQEIDEYKNRISLSTRILETYPGELV-------EKFDEM 278
BLAST of EY659216 vs. ExPASy Swiss-Prot
Match: RS1_STAAW (30S ribosomal protein S1 OS=Staphylococcus aureus (strain MW2) GN=rpsA PE=3 SV=1) HSP 1 Score: 80.8777 bits (198), Expect = 7.535e-15 Identity = 48/115 (41.74%), Postives = 68/115 (59.13%), Query Frame = 1 Query: 49 EVDEEQSRLVLSNRKAMADSQ---------AQLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTPGDMIR 366 E+D E +R++LS RKA+ + L G V+ G V L +GAFIDIGG++GL+HVS++SH+ V V+ G +KV I S DR+ R+SLS K PTP + I+ Sbjct: 160 ELDPENNRVILS-RKAVEQEENDAKKDQLLQSLNEGDVIDGKVARLTQFGAFIDIGGVDGLVHVSELSHEHVQTPEEVVSIGQDVKVKIKSIDRDTERISLSIKDTLPTPFENIK 273
BLAST of EY659216 vs. ExPASy Swiss-Prot
Match: RS1_STAAS (30S ribosomal protein S1 OS=Staphylococcus aureus (strain MSSA476) GN=rpsA PE=3 SV=1) HSP 1 Score: 80.8777 bits (198), Expect = 7.535e-15 Identity = 48/115 (41.74%), Postives = 68/115 (59.13%), Query Frame = 1 Query: 49 EVDEEQSRLVLSNRKAMADSQ---------AQLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTPGDMIR 366 E+D E +R++LS RKA+ + L G V+ G V L +GAFIDIGG++GL+HVS++SH+ V V+ G +KV I S DR+ R+SLS K PTP + I+ Sbjct: 160 ELDPENNRVILS-RKAVEQEENDAKKDQLLQSLNEGDVIDGKVARLTQFGAFIDIGGVDGLVHVSELSHEHVQTPEEVVSIGQDVKVKIKSIDRDTERISLSIKDTLPTPFENIK 273 The following BLAST results are available for this feature:
BLAST of EY659216 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 41
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Sequences
The
following sequences are available for this feature:
EST sequence >EY659216 ID=EY659216; Name=EY659216; organism=Citrus sinensis; type=EST; length=713bpback to top |