EY659207

Overview
NameEY659207
Unique NameEY659207
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length681
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY659207 vs. ExPASy Swiss-Prot
Match: PMP22_ARATH (Peroxisomal membrane protein PMP22 OS=Arabidopsis thaliana GN=PMP22 PE=1 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 7.471e-32
Identity = 63/137 (45.99%), Postives = 91/137 (66.42%), Query Frame = 1
Query:   28 QKASTEKLLLLMLFDFGYGVPFGHFLNKFLDAIFKGR-DNKSVAKKVLLEQLIFSPWINFLFMTYFGLVVEGKPWGSVMKKVRKDYPAVQFTSWKVWPTVTWVNFQYVPQQFRELFFSLVASCWAIFINLKAESAAI 435
            QK    ++LL ++F  G+  P GHF + +LD  FKG+ D ++VAKKV+LEQL  SP  + LFM Y+G+V+E  PW  V ++++K YP VQ T+W  +P V W+N++YVP  FR +  SLVA  W IF+ L+A S  +
Sbjct:   48 QKIQLRRVLLKVIFAGGFLGPAGHFFHTYLDKFFKGKKDTQTVAKKVILEQLTLSPLNHLLFMIYYGVVIERTPWTLVRERIKKTYPTVQLTAWTFFPVVGWINYKYVPLHFRVILHSLVAFFWGIFLTLRARSMTL 184          

HSP 2 Score: 21.1718 bits (43), Expect = 7.471e-32
Identity = 6/14 (42.86%), Postives = 13/14 (92.86%), Query Frame = 2
Query:    5 IAHKISGVKKLQLK 46
            ++ K+SG++K+QL+
Sbjct:   40 VSQKLSGIQKIQLR 53          
BLAST of EY659207 vs. ExPASy Swiss-Prot
Match: PX24C_DICDI (PXMP2/4 family protein 3 OS=Dictyostelium discoideum GN=DDB_G0290223 PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.665e-14
Identity = 39/112 (34.82%), Postives = 66/112 (58.93%), Query Frame = 1
Query:   88 PFGHFLNKFLDAIFKG-RDNKSVAKKVLLEQLIFSPWINFLFMTYFGLVVEGKPWGSVMKKVRKDYPAVQFTSWKVWPTVTWVNFQYVPQQFRELFFSLVASCWAIFINLKA 420
            P  H+ +  LD +FK  +D      K++++QL+F+P+IN  F +    +++GKP   + K     +P ++  SWKVWP    +NF++VP   R LF +LV  CW I++++ A
Sbjct:   70 PLVHYWHIILDRLFKNIKDKYQSWGKLIVDQLVFAPFINIAFYSVLA-ILDGKPKSILFKLYFDLFPTLK-ASWKVWPLAQLINFRFVPSHLRVLFGNLVGFCWGIYLSILA 179          
BLAST of EY659207 vs. ExPASy Swiss-Prot
Match: PX24D_DICDI (PXMP2/4 family protein 4 OS=Dictyostelium discoideum GN=DDB_G0290631 PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.112e-11
Identity = 35/127 (27.56%), Postives = 66/127 (51.97%), Query Frame = 1
Query:   28 QKASTEKLLLLMLFDFGYGVPFGHFLNKFLDAIFKGRDNKSVAKKVLLEQLIFSPWINFLFMTYFGLVVEGKPWGSVMKKVRKDYPAVQFTSWKVWPTVTWVNFQYVPQQFRELFFSLVASCWAIFI 408
            +K   ++ + + +F F    P  H+  K+LD  F  +  +    K+ ++Q++ SP  NFLF +  G ++EGK    +++K++KD+     +   VWP + +VNF Y+    R  F ++    W  F+
Sbjct:   53 KKYDFKRSMRMAVFGFAVTGPLFHYWFKYLDKHFPKKSYRHAFIKLTIDQVVCSPVFNFLFFSGMG-ILEGKSKDDIVEKLKKDWLTTYVSDCVVWPFINFVNFAYISSIHRVTFMNVCNIGWGAFL 178          
The following BLAST results are available for this feature:
BLAST of EY659207 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
PMP22_ARATH7.471e-3245.99Peroxisomal membrane protein PMP22 OS=Arabidopsis ... [more]
PX24C_DICDI2.665e-1434.82PXMP2/4 family protein 3 OS=Dictyostelium discoide... [more]
PX24D_DICDI2.112e-1127.56PXMP2/4 family protein 4 OS=Dictyostelium discoide... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-101-004-E12-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659207 ID=EY659207; Name=EY659207; organism=Citrus sinensis; type=EST; length=681bp
TGCAATTGCCCATAAGATTTCTGGGGTCAAAAAGCTTCAACTGAAAAATT
GCTGCTTCTTATGCTTTTTGATTTCGGATATGGAGTACCATTTGGGCATT
TTCTTAACAAGTTCTTGGATGCCATTTTCAAGGGAAGGGACAACAAATCT
GTTGCAAAGAAGGTATTATTGGAGCAACTAATATTTTCGCCTTGGATCAA
CTTTCTGTTCATGACTTACTTTGGCTTGGTGGTTGAAGGAAAACCATGGG
GTTCAGTCATGAAGAAAGTTCGAAAGGACTATCCAGCTGTTCAGTTTACT
TCATGGAAGGTTTGGCCAACTGTTACTTGGGTGAATTTCCAGTACGTCCC
TCAGCAATTCCGAGAACTCTTTTTCAGCTTGGTTGCCTCCTGCTGGGCTA
TCTTCATCAATTTGAAAGCTGAATCCGCTGCAATAAAGAAGGACTAGAGG
GAGCCTCCAAGGGGTCTGGCCGGTAGAGTGATTTTCAAGTAGCCGAGTCT
AAATCCTGAGGAAAGGAGGGATTTAAAAAACTGGTTTCAGTTNTGGTCAA
CCTTTTGCCTTTTTAAAATTAGCTAAATATAACAAGTACGACTAGATGGA
GGAATTGTTTTTTAAATTTGTCTTTGGGATTACTATTCAATAATTGGATG
CCTGCATTTTATTCGAAAAAAAAAAAAAAAA
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