EY659166

Overview
NameEY659166
Unique NameEY659166
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length544
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7462 contig Csv1_Contig7462:1..544. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY659166 vs. ExPASy Swiss-Prot
Match: ROC5_NICSY (33 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 5.776e-15
Identity = 39/64 (60.94%), Postives = 50/64 (78.12%), Query Frame = 1
Query:   34 GFVTFETAEDLHSALDAMNGVEVEGRPLRLNMANERAPPVSPAAKETNTENSIDGSELLSSIST 225
            GF+TF +AE ++SALD MN VE+EGRPLRLN+A ++AP  SP   ET+ EN  D SELLSS+S+
Sbjct:  261 GFITFSSAEAMNSALDTMNEVELEGRPLRLNVAGQKAPVSSPPVVETSPENDSDNSELLSSLSS 324          
The following BLAST results are available for this feature:
BLAST of EY659166 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
ROC5_NICSY5.776e-1560.9433 kDa ribonucleoprotein, chloroplastic OS=Nicotia... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-101-004-B04-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659166 ID=EY659166; Name=EY659166; organism=Citrus sinensis; type=EST; length=544bp
GTNCCGGNATTCCAAGCCCGACCCACGCGTCCGGGTTTTGTCACTTTTGA
AACAGCAGAGGATTTACACTCTGCTTTGGATGCCATGAACGGAGTGGAAG
TCGAAGGGCGGCCCCTGCGATTGAATATGGCAAATGAAAGAGCTCCTCCT
GTTTCGCCAGCAGCAAAGGAAACGAACACAGAAAACAGCATTGACGGCAG
CGAATTGCTTTCTAGCATTAGCACATAAAGAAATATGGCATCAGAAATGT
TTTAATCTACTCATGGATGGAGTTTTTGCGGGAAAATGTTGACTTCTACT
TGTAAATTTTGAATGATAGCTGTTTCTTTATGCTTCACTACTTTTTATAA
TGGTACAGATTTATCACATCGATGTGAGGGTGAATGAGGTTTTATAGTTG
CAGTCCATTGAGCGTATGTAATTGTTTTTCCTACAACAGTTCTGGTATTA
TGACAAATTTATTATGAACCGTCCTGTGCAGAATATTATGCTCCACTGAA
TGCACTGATTCATCAATCTTAAAAAAAAAAAAAAAAAAAAAAAA
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