EY659131

Overview
NameEY659131
Unique NameEY659131
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length885
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY659131 vs. ExPASy Swiss-Prot
Match: AROK_ARATH (Shikimate kinase, chloroplastic OS=Arabidopsis thaliana GN=At2g21940 PE=2 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 4.757e-23
Identity = 41/86 (47.67%), Postives = 58/86 (67.44%), Query Frame = 1
Query:  295 SFFSTLQSKALQKLSLXXXXXXXXXXXXXXRPLNWRFMRQGITVFLNVPLDALARRIAAVGTDSFPLLDYDSADSYTKAFTALSAL 552
            +FF   ++ AL+KLS               RP+NW++M +GI+++L+VPL+ALA RIAAVGTDS PLL  +S D+Y+ AF  LSA+
Sbjct:  156 NFFRGKETDALKKLSSRYQVVVSTGGGAVIRPINWKYMHKGISIWLDVPLEALAHRIAAVGTDSRPLLHDESGDAYSVAFKRLSAI 241          

HSP 2 Score: 48.521 bits (114), Expect = 4.757e-23
Identity = 25/47 (53.19%), Postives = 31/47 (65.96%), Query Frame = 3
Query:  558 ERSEAYANADATVSLLNLAACIGLKDVLDITPTHIXMEVLVQAQKYL 698
            ER EAY NA+A VSL N+AA  G K+V D+TPT I +E   Q   +L
Sbjct:  244 ERGEAYTNANARVSLENIAAKRGYKNVSDLTPTEIAIEAFEQVLSFL 290          
BLAST of EY659131 vs. ExPASy Swiss-Prot
Match: AROK_SOLLC (Shikimate kinase, chloroplastic OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.439e-17
Identity = 38/91 (41.76%), Postives = 50/91 (54.95%), Query Frame = 1
Query:  280 EPESNSFFSTLQSKALQKLSLXXXXXXXXXXXXXXRPLNWRFMRQGITVFLNVPLDALARRIAAVGTDSFPLLDYDSADSYTKAFTALSAL 552
            E    SFF   +++ L KLSL              RP+NWR M +GI+V+L+VPL+ALA+RI   GT S PLL  +S D Y      L+ L
Sbjct:  153 ELRGESFFRDNETEVLHKLSLMHRLVVSTGGGAVVRPINWRHMHKGISVWLDVPLEALAKRITTEGTKSRPLLHEESGDVYDTTLKRLTTL 243          

HSP 2 Score: 41.2022 bits (95), Expect = 1.439e-17
Identity = 24/46 (52.17%), Postives = 29/46 (63.04%), Query Frame = 3
Query:  561 RSEAYANADATVSLLNLAACIGLKDVLDITPTHIXMEVLVQAQKYL 698
            R E YANA A VSL N+A     KDV  ITP  I +EVL+Q + +L
Sbjct:  247 RGENYANASARVSLENIALKRE-KDVCHITPAEITLEVLIQIENFL 291          
The following BLAST results are available for this feature:
BLAST of EY659131 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
AROK_ARATH4.757e-2347.67Shikimate kinase, chloroplastic OS=Arabidopsis tha... [more]
AROK_SOLLC1.439e-1741.76Shikimate kinase, chloroplastic OS=Solanum lycoper... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-101-001-G03-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659131 ID=EY659131; Name=EY659131; organism=Citrus sinensis; type=EST; length=885bp
CACGCGTCCGACCAACCTCGCCTTCTCCTCTCTCTCACTTCTCCGTTTTC
AGCCTTCTTCTTTGGCAGTTCGTTTTTGGGGGGGGTAAAAAGAAAGAGTA
AAAAATGAAAGCTTTAACGTATGGCTCAACTCTGCAATTTAGTACAAGTG
TTGGTGGGGAGATCGGCTCTTTCAATCAGAATTGCAAGAGACAACAGACT
CAACAACACTTCATAAATTTGAATCCTTCAAAACTGTTAACTTCATGGCC
GAGTTCATTAGCTTTTTCACTGTACAGAGGAGCCAGAGAGTAATAGTTTC
TTCTCTACATTGCAGAGCAAGGCACTGCAGAAATTGTCCTTGGTACCACA
ACAAGTTGTAGCCACAGGTGGTGGTGCAGTGGTTCGCCCACTCAACTGGA
GATTTATGAGGCAGGGCATCACTGTCTTTCTCAATGTACCCCTGGATGCC
TTGGCAAGGAGAATTGCCGCTGTTGGAACAGATTCCTTCCCTCTCTTGGA
TTATGATTCAGCCGATTCTTATACAAAGGCATTTACGGCACTGTCTGCTC
TTTCAAGGAGAGATCCGAGGCATATGCAAATGCTGATGCTACCGTTTCTC
TTCTCAATCTTGCAGCATGCATTGGTCTCAAAGATGTACTAGATATTACG
CCCACCCACATAGNCATGGAGGTGCTTGTACAAGCTCAGAAATATCTAAA
TTTCTAAACGCGATNATGGCGGGTCCATTCAATGCTTNNNCTACAAGCNA
ANTCATTTGCTATATTTACCTCTCTTTTCAGTAATGCGATCATCCAGTGA
ATTTGTTTTTCATTTCATCAGGGCTGCATGGTATACATGCCGGGAGTAAA
AATTACAGGCTTTTCTTTTTGATTTGTGTAACATG
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