EY659129

Overview
NameEY659129
Unique NameEY659129
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length878
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY659129 vs. ExPASy Swiss-Prot
Match: PAT1_ARATH (Scarecrow-like transcription factor PAT1 OS=Arabidopsis thaliana GN=PAT1 PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 4.350e-35
Identity = 49/89 (55.06%), Postives = 63/89 (70.79%), Query Frame = 2
Query:  278 VQLKNLEALPVEDLAANFSVMLHHMPDESVNIHNPGYTLLMLLKSLTPNVGTLAEHEDNSNTAPFVQRFLDTMDHYGAIFEATDVALPR 544
            V+ KNL   P E LA NF+ +LHHMPDESV+  N    LL ++KSL+P V TL E E N+NTA F  RF++TM++Y A+FE+ DV LPR
Sbjct:  306 VKPKNLGVRPGEALAVNFAFVLHHMPDESVSTENHRDRLLRMVKSLSPKVVTLVEQESNTNTAAFFPRFMETMNYYAAMFESIDVTLPR 394          

HSP 2 Score: 53.5286 bits (127), Expect = 4.350e-35
Identity = 27/52 (51.92%), Postives = 33/52 (63.46%), Query Frame = 1
Query:   49 IDFLVAQGSQGIILIMALAFSPWRGPTHSKTGMDDSTAAYARGGGLAVRATR 204
            IDF + QGSQ + LI A A  P   P    TG+DD T+AYARGGGL++   R
Sbjct:  231 IDFQIGQGSQWVTLIQAFAARPGGPPRIRITGIDDMTSAYARGGGLSIVGNR 282          

HSP 3 Score: 38.5058 bits (88), Expect = 4.350e-35
Identity = 20/33 (60.61%), Postives = 23/33 (69.70%), Query Frame = 1
Query:  550 QRLNDVEQHCLPLVIDNLIACNGADRVYAMNLL 648
            QR+N VEQHCL   + N+IAC GADRV    LL
Sbjct:  398 QRIN-VEQHCLARDVVNIIACEGADRVERHELL 429          
BLAST of EY659129 vs. ExPASy Swiss-Prot
Match: CIGR2_ORYSJ (Chitin-inducible gibberellin-responsive protein 2 OS=Oryza sativa subsp. japonica GN=CIGR2 PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 8.143e-33
Identity = 48/89 (53.93%), Postives = 64/89 (71.91%), Query Frame = 2
Query:  278 VQLKNLEALPVEDLAANFSVMLHHMPDESVNIHNPGYTLLMLLKSLTPNVGTLAEHEDNSNTAPFVQRFLDTMDHYGAIFEATDVALPR 544
            V+  +L  +P E LA NF++ LHH+PDESV+  N    LL ++KSL+P V TL E E N+NTAPF QRF +T+D+Y AIFE+ D+ LPR
Sbjct:  360 VEAAHLGVIPGEALAVNFTLELHHIPDESVSTANHRDRLLRMVKSLSPKVLTLVEMESNTNTAPFPQRFAETLDYYTAIFESIDLTLPR 448          

HSP 2 Score: 54.299 bits (129), Expect = 8.143e-33
Identity = 29/55 (52.73%), Postives = 36/55 (65.45%), Query Frame = 1
Query:   49 IDFLVAQGSQGIILIMALAFSPWRGPTHSKTGMDDSTAAYARGGGLAVRATRDYH 213
            IDF ++QG+Q I L+ ALA  P   PT   TG+DDS +AYARGGGL +   R  H
Sbjct:  285 IDFHISQGAQWISLLQALAARPGGPPTVRITGIDDSVSAYARGGGLELVGRRLSH 339          

HSP 3 Score: 31.5722 bits (70), Expect = 8.143e-33
Identity = 15/26 (57.69%), Postives = 19/26 (73.08%), Query Frame = 1
Query:  550 QRLNDVEQHCLPLVIDNLIACNGADR 627
            +R+N +EQHCL   I NLIAC G +R
Sbjct:  452 ERIN-MEQHCLAREIVNLIACEGEER 476          
BLAST of EY659129 vs. ExPASy Swiss-Prot
Match: SCL5_ARATH (Scarecrow-like protein 5 OS=Arabidopsis thaliana GN=SCL5 PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.225e-29
Identity = 50/97 (51.55%), Postives = 65/97 (67.01%), Query Frame = 2
Query:  254 CCYFVDLSVQLKNLEALPVEDLAANFSVMLHHMPDESVNIHNPGYTLLMLLKSLTPNVGTLAEHEDNSNTAPFVQRFLDTMDHYGAIFEATDVALPR 544
            CC      V+++ L     E LA NF ++LHHMPDESV + N    LL L+K L+PNV TL E E N+NTAPF+ RF++TM+HY A+FE+ DV L R
Sbjct:  409 CC----TEVEIEKLGVRNGEALAVNFPLVLHHMPDESVTVENHRDRLLRLVKHLSPNVVTLVEQEANTNTAPFLPRFVETMNHYLAVFESIDVKLAR 501          

HSP 2 Score: 41.9726 bits (97), Expect = 1.225e-29
Identity = 22/52 (42.31%), Postives = 30/52 (57.69%), Query Frame = 1
Query:   49 IDFLVAQGSQGIILIMALAFSPWRGPTHSKTGMDDSTAAYARGGGLAVRATR 204
            IDF ++QG Q + LI AL   P   P    TG+DD  +++AR GGL +   R
Sbjct:  338 IDFQISQGGQWVSLIRALGARPGGPPNVRITGIDDPRSSFARQGGLELVGQR 389          

HSP 3 Score: 32.7278 bits (73), Expect = 1.225e-29
Identity = 15/26 (57.69%), Postives = 19/26 (73.08%), Query Frame = 1
Query:  550 QRLNDVEQHCLPLVIDNLIACNGADR 627
            +R+N VEQHCL   + NLIAC G +R
Sbjct:  505 ERIN-VEQHCLAREVVNLIACEGVER 529          
BLAST of EY659129 vs. ExPASy Swiss-Prot
Match: SCL21_ARATH (Scarecrow-like protein 21 OS=Arabidopsis thaliana GN=SCL21 PE=1 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 7.481e-24
Identity = 62/171 (36.26%), Postives = 97/171 (56.73%), Query Frame = 2
Query:   44 HISIF*LLKAARGSYLLWLSPSRPGGAPHIQRQEWMILQQLMLAEGDLLFAL---LETIIARTLI*SDF*DQRCCYFVDLSVQLKNLEALPVEDLAANFSVMLHHMPDESVNIHNPGYTLLMLLKSLTPNVGTLAEHEDNSNTAPFVQRFLDTMDHYGAIFEATDVALPRH 547
            HI  F + + ++   L+    +RPGGAP+I+           + +G +L  +   LE +  +  +   F            V+++NL+    E L  NF+ MLHH+PDESV++ N    LL ++KSL+P V TL E E N+NT+PF+ RFL+T+ +Y A+FE+ DV LPR+
Sbjct:  159 HIIDFQIGQGSQWIALIQAFAARPGGAPNIRITG--------VGDGSVLVTVKKRLEKLAKKFDVPFRF---NAVSRPSCEVEVENLDVRDGEALGVNFAYMLHHLPDESVSMENHRDRLLRMVKSLSPKVVTLVEQECNTNTSPFLPRFLETLSYYTAMFESIDVMLPRN 318          

HSP 2 Score: 34.2686 bits (77), Expect = 7.481e-24
Identity = 15/33 (45.45%), Postives = 23/33 (69.70%), Query Frame = 1
Query:  550 QRLNDVEQHCLPLVIDNLIACNGADRVYAMNLL 648
            +R+N +EQHC+   + N+IAC GA+R+    LL
Sbjct:  321 ERIN-IEQHCMARDVVNIIACEGAERIERHELL 352          
BLAST of EY659129 vs. ExPASy Swiss-Prot
Match: CIGR1_ORYSJ (Chitin-inducible gibberellin-responsive protein 1 OS=Oryza sativa subsp. japonica GN=CIGR1 PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.132e-23
Identity = 60/171 (35.09%), Postives = 97/171 (56.73%), Query Frame = 2
Query:   38 NTHISIF*LLKAARGSYLLWLSPSRPGGAPHIQRQEWMI-LQQLMLAEG-DLLFALLETIIARTLI*SDF*DQRCCYFVDLSVQLKNLEALPVEDLAANFSVMLHHMPDESVNIHNPGYTLLMLLKSLTPNVGTLAEHEDNSNTAPFVQRFLDTMDHYGAIFEATDVALPR 544
            N HI  F + +  +   L+    +RPGG P ++       + +    EG D++  +L+++     I  +F      Y   ++ ++  LE  P E L+ NF++ LHH PDESV+++NP   LL ++K L+P V TL E E ++NT PF+ RF +TM++Y A+FE+ D  LPR
Sbjct:  308 NIHIIDFQIAQGTQWITLIQALAARPGGPPRVRITGIDDPVSEYARGEGLDIVGKMLKSMSEEFKIPLEF-TPLSVYATQVTKEM--LEIRPGEALSVNFTLQLHHTPDESVDVNNPRDGLLRMVKGLSPKVTTLVEQESHTNTTPFLMRFGETMEYYSAMFESIDANLPR 475          

HSP 2 Score: 34.6538 bits (78), Expect = 2.132e-23
Identity = 17/28 (60.71%), Postives = 18/28 (64.29%), Query Frame = 1
Query:  565 VEQHCLPLVIDNLIACNGADRVYAMNLL 648
            VEQHCL   I N+IAC G DRV    LL
Sbjct:  483 VEQHCLAKDIVNIIACEGKDRVERHELL 510          
BLAST of EY659129 vs. ExPASy Swiss-Prot
Match: SCL1_ARATH (Scarecrow-like protein 1 OS=Arabidopsis thaliana GN=SCL1 PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 4.657e-22
Identity = 41/91 (45.05%), Postives = 56/91 (61.54%), Query Frame = 2
Query:  278 VQLKNLEALPVEDLAANFSVMLHHMPDESVNIHNPGYTLLMLLKSLTPNVGTLAEHEDNSNTAPFVQRFLDTMDHYGAIFEATDVALPRHS 550
            V    L   P E L  NF+  LHHMPDESV   N    LL ++KSL P + T+ E + N+NT+PF  RF++  ++Y A+FE+ D+ LPR S
Sbjct:  408 VSPSTLGCKPGETLIVNFAFQLHHMPDESVTTVNQRDELLHMVKSLNPKLVTVVEQDVNTNTSPFFPRFIEAYEYYSAVFESLDMTLPRES 498          

HSP 2 Score: 33.8834 bits (76), Expect = 4.657e-22
Identity = 19/52 (36.54%), Postives = 28/52 (53.85%), Query Frame = 1
Query:   49 IDFLVAQGSQGIILIMALAFSPWRGPTHSKTGMDDSTAAYARGGGLAVRATR 204
            IDF + QG+Q + LI ++A  P + P    TG+DD  +     GGL +   R
Sbjct:  333 IDFDINQGNQYMTLIRSIAELPGKRPRLRLTGIDDPESVQRSIGGLRIIGLR 384          

HSP 3 Score: 27.7202 bits (60), Expect = 4.657e-22
Identity = 12/27 (44.44%), Postives = 19/27 (70.37%), Query Frame = 1
Query:  550 QRLNDVEQHCLPLVIDNLIACNGADRV 630
            +R+N VE+ CL   I N++AC G +R+
Sbjct:  500 ERMN-VERQCLARDIVNIVACEGEERI 525          
BLAST of EY659129 vs. ExPASy Swiss-Prot
Match: SCL13_ARATH (Scarecrow-like protein 13 OS=Arabidopsis thaliana GN=SCL13 PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 2.023e-20
Identity = 61/170 (35.88%), Postives = 91/170 (53.53%), Query Frame = 2
Query:   44 HISIF*LLKAARGSYLLWLSPSRPGGAPHIQRQEWMILQQLMLAEG---DLLFALLETIIARTLI*SDF*DQRCCYFVDLSVQLKNLEALPVEDLAANFSVMLHHMPDESVNIHNPGYTLLMLLKSLTPNVGTLAEHEDNSNTAPFVQRFLDTMDHYGAIFEATDVALPR 544
            HI  F + + ++  +L+      PGG P + R   +   Q   A G    L+   L T+     +  +F D          VQ ++L   P   +  NF  +LHHMPDESV++ N    LL L+KSL+P + TL E E N+NT+PF+ RF++T+D+Y A+FE+ D A PR
Sbjct:   81 HIIDFQIAQGSQYMFLIQELAKHPGGPP-LLRVTGVDDSQSTYARGGGLSLVGERLATLAQSCGVPFEFHD---AIMSGCKVQREHLGLEPGFAVVVNFPYVLHHMPDESVSVENHRDRLLHLIKSLSPKLVTLVEQESNTNTSPFLSRFVETLDYYTAMFESIDAARPR 246          

HSP 2 Score: 28.4906 bits (62), Expect = 2.023e-20
Identity = 15/36 (41.67%), Postives = 23/36 (63.89%), Query Frame = 1
Query:  550 QRLNDVEQHCLPLVIDNLIACNGADRVYAMNLL*SG 657
            QR++  EQHC+   I N+IAC  ++RV    +L +G
Sbjct:  250 QRIS-AEQHCVARDIVNMIACEESERVERHEVLGNG 284          
BLAST of EY659129 vs. ExPASy Swiss-Prot
Match: SCL8_ARATH (Scarecrow-like protein 8 OS=Arabidopsis thaliana GN=SCL8 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 9.366e-11
Identity = 36/79 (45.57%), Postives = 47/79 (59.49%), Query Frame = 2
Query:  305 PVEDLAANFSVMLHHMPDESVNIHNPGYTLLMLLKSLTPNVGTLAEHEDNSNTAPFVQRFLDTMDHYGAIFEATDVALP 541
            P E LA N +  L+ +PDESV   NP   LL  +K L P V TL E E NSNTAPF+ R  ++   YGA+ E+ +  +P
Sbjct:  466 PDETLAVNLAFKLYRVPDESVCTENPRDELLRRVKGLKPRVVTLVEQEMNSNTAPFLGRVSESCACYGALLESVESTVP 544          
The following BLAST results are available for this feature:
BLAST of EY659129 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
PAT1_ARATH4.350e-3555.06Scarecrow-like transcription factor PAT1 OS=Arabid... [more]
CIGR2_ORYSJ8.143e-3353.93Chitin-inducible gibberellin-responsive protein 2 ... [more]
SCL5_ARATH1.225e-2951.55Scarecrow-like protein 5 OS=Arabidopsis thaliana G... [more]
SCL21_ARATH7.481e-2436.26Scarecrow-like protein 21 OS=Arabidopsis thaliana ... [more]
CIGR1_ORYSJ2.132e-2335.09Chitin-inducible gibberellin-responsive protein 1 ... [more]
SCL1_ARATH4.657e-2245.05Scarecrow-like protein 1 OS=Arabidopsis thaliana G... [more]
SCL13_ARATH2.023e-2035.88Scarecrow-like protein 13 OS=Arabidopsis thaliana ... [more]
SCL8_ARATH9.366e-1145.57Scarecrow-like protein 8 OS=Arabidopsis thaliana G... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-101-001-G01-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659129 ID=EY659129; Name=EY659129; organism=Citrus sinensis; type=EST; length=878bp
CCACGCGTCCGGCTGATACCATGCACGGCGAACATGAAATACACATATAT
CGATTTTCTAGTTGCTCAAGGCAGCCAGGGGATCATACTTATTATGGCTC
TCGCCTTCTCGCCCTGGAGGGGCCCCACACATTCAAAGACAGGAATGGAT
GATTCTACAGCAGCTTATGCTCGCGGAGGGGGACTTGCTGTTCGCGCTAC
TAGAGACTATCATAGCTCGCACACTTATATAAAGCGACTTTTGAGACCAA
CGCTGCTGCTATTTCGTGGATCTGAGCGTTCAACTTAAAAACCTCGAAGC
TCTACCTGTCGAAGACCTTGCCGCGAATTTTTCCGTGATGCTCCATCACA
TGCCTGATGAAAGTGTAAACATCCATAATCCTGGATACACACTCCTGATG
CTGCTAAAAAGTTTGACGCCTAATGTGGGGACACTTGCCGAGCATGAAGA
CAACTCTAATACTGCCCCATTTGTTCAACGTTTCCTTGATACGATGGATC
ACTATGGCGCTATCTTTGAGGCAACTGATGTTGCTCTGCCAAGACATAGC
AACGGCTGAATGATGTGGAGCAGCACTGCTTGCCACTCGTGATTGACAAC
CTTATAGCATGCAACGGAGCTGACAGAGTGTACGCCATGAACCTTTTGTG
AAGTGGAATCACGNTGATTAATGACTGCACTTACACCCTATCATTGACCC
CTTCTGCGATCGCGACATCATACTCTGCTGGAAACTACATGACAACTCGC
ACTTGGAGATGGGATGATCACTCTTTNCTGGCTGGAAACCTACTATAATG
GTTCCACTGCTGGAGTCGAGATCATGCCAATCACAGATTCATGGGTCGCG
GTTGCATTGGGGAAATTCTTAAAGGCGC
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