EY659110

Overview
NameEY659110
Unique NameEY659110
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length479
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8129 contig Csv1_Contig8129:1823..2301. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY659110 vs. ExPASy Swiss-Prot
Match: GH35_ORYSJ (Probable indole-3-acetic acid-amido synthetase GH3.5 OS=Oryza sativa subsp. japonica GN=GH3.5 PE=2 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 1.791e-29
Identity = 58/93 (62.37%), Postives = 73/93 (78.49%), Query Frame = 3
Query:   12 EVNDEVLKECCNCLDRSFVDAGYVSARKVNAIGPLELRVVLKGTFQQILDHYLGLGAALSQFKTPRCVGPTNKTVLQILCNNIGKSYFSTAYG 290
            + +DEVL  C N LD +F+DAGY  +RK+  IGPLELR++ KGTF++ILDH+L LG A+SQFKTPR V P+N  VLQIL  N+ +SYFSTAYG
Sbjct:  488 DASDEVLSSCANALDLAFIDAGYTGSRKIKTIGPLELRILRKGTFKEILDHFLSLGGAVSQFKTPRFVNPSNSKVLQILSRNVTQSYFSTAYG 580          
BLAST of EY659110 vs. ExPASy Swiss-Prot
Match: GH312_ORYSJ (Probable indole-3-acetic acid-amido synthetase GH3.12 OS=Oryza sativa subsp. japonica GN=GH3.12 PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 1.680e-19
Identity = 46/88 (52.27%), Postives = 63/88 (71.59%), Query Frame = 3
Query:   27 VLKECCNCLDRSF-VDAGYVSARKVNAIGPLELRVVLKGTFQQILDHYLGLGAALSQFKTPRCVGPTNKTVLQILCNNIGKSYFSTAY 287
            VL+ CC+ +DR+F  DAGY  +RK  AIG LELRV+ +G FQ++L HY+  G++  QFK PRCV P+N  VL++L +N    +FSTAY
Sbjct:  523 VLQRCCDEMDRAFGADAGYAQSRKTCAIGALELRVLRRGAFQEVLRHYVAGGSSAGQFKMPRCVAPSNAGVLRVLKDNTINIFFSTAY 610          
BLAST of EY659110 vs. ExPASy Swiss-Prot
Match: GH33_ARATH (Indole-3-acetic acid-amido synthetase GH3.3 OS=Arabidopsis thaliana GN=GH3.3 PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 2.873e-11
Identity = 33/89 (37.08%), Postives = 56/89 (62.92%), Query Frame = 3
Query:   18 NDEVLKECCNCLDRSFVDAGYVSARKVNAIGPLELRVVLKGTFQQILDHYLGLGAALSQFKTPRCVGPTNKTVLQILCNNIGKSYFSTA 284
            NDEV+  CC  ++ S       S     +IGPLE+RVV  GTF++++D+ +  GA+++Q+K PRCV  T   ++++L + +  ++FS A
Sbjct:  499 NDEVMARCCLEMEESLNSVYRQSRVADKSIGPLEIRVVKNGTFEELMDYAISRGASINQYKVPRCVSFT--PIMELLDSRVVSTHFSPA 585          
The following BLAST results are available for this feature:
BLAST of EY659110 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
GH35_ORYSJ1.791e-2962.37Probable indole-3-acetic acid-amido synthetase GH3... [more]
GH312_ORYSJ1.680e-1952.27Probable indole-3-acetic acid-amido synthetase GH3... [more]
GH33_ARATH2.873e-1137.08Indole-3-acetic acid-amido synthetase GH3.3 OS=Ara... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-101-001-E05-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659110 ID=EY659110; Name=EY659110; organism=Citrus sinensis; type=EST; length=479bp
CCACGCGTCCGGAAGTCAATGACGAGGTCTTGAAAGAATGCTGCAATTGT
TTGGATCGTTCCTTTGTCGACGCAGGTTATGTCAGTGCACGCAAGGTCAA
TGCCATAGGGCCGCTCGAACTCCGAGTTGTTTTGAAGGGCACCTTCCAAC
AGATTTTAGATCATTACCTTGGATTGGGAGCTGCTCTTAGTCAGTTTAAA
ACCCCTAGGTGCGTTGGACCTACCAACAAGACTGTGTTGCAAATCTTATG
TAATAACATTGGTAAGAGCTACTTTAGTACTGCTTACGGGTAATTGTAAG
AAACTTGCAAATCTGATAATCTTTTTATAGGTATTGAAATCTTTTCTGGG
TCCCTTGGTCTCTTGATAGTCAATTGTGTAATCTACTTTCACATCCTCAA
TTCCTCATGTAAGACTGCCATTGCTAAGAATTAAGAAGATATACACTATA
CAAGATTATACTAAAAAAAAAAAAAAAAA
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