EY674764

Overview
NameEY674764
Unique NameEY674764
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1015
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY674764 vs. ExPASy Swiss-Prot
Match: DPNPM_ARATH (Putative PAP-specific phosphatase, mitochondrial OS=Arabidopsis thaliana GN=At4g05090 PE=2 SV=1)

HSP 1 Score: 63.929 bits (154), Expect = 1.335e-16
Identity = 32/77 (41.56%), Postives = 45/77 (58.44%), Query Frame = 2
Query:  359 GSSWVSHVGCGTWTKKLSSIQDTKTLDYWTRSSVERWCLVHKASF*IQNSQQWESMAPTALFNAKNEANKIGDNEIL 589
            G+  +SH+GCGTWTKKL ++      D W R  V+   L++KA F IQ SQ WES+  +  F+A   +  +   EIL
Sbjct:  222 GTLMLSHIGCGTWTKKLQNVSGNVAGD-WIRCFVDACVLMNKARFCIQESQTWESLPLSGFFDASTVSEDLKHKEIL 297          

HSP 2 Score: 43.8986 bits (102), Expect = 1.335e-16
Identity = 26/51 (50.98%), Postives = 31/51 (60.78%), Query Frame = 1
Query:  175 DFYSGTFFFVKVLTP*F*VGLALVVEGEIVL*VMGCPNWLEDKPCTSTTSM 327
            D   GT  F+K     + VGLALVV+ EIVL VMGCPNW  D    ST ++
Sbjct:  174 DPIDGTRGFLKGDEALYVVGLALVVDNEIVLGVMGCPNWPGDSSDGSTGTL 224          
The following BLAST results are available for this feature:
BLAST of EY674764 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
DPNPM_ARATH1.335e-1641.56Putative PAP-specific phosphatase, mitochondrial O... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-401-001-B08-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY674764 ID=EY674764; Name=EY674764; organism=Citrus sinensis; type=EST; length=1015bp
GTCCGAACAGAGCACTAAGATCCCTTATAAGGCATGATTAATGTTCCCAG
TCAAAATTTACCCCCTTTGGAAGTAAAAATGTAAAACCACACTGAAGCAG
TTTTCCGCGGAACAACCTCAATGGCATCCATCTTTTAAATTGCTATTGCA
TTGAAATTTAGTTGAATTTTGGATGATTTTTATTCTGGGACTTTCTTCTT
TGTAAAAGTTCTTACCCCATAATTTTAGGTAGGTTTGGCTCTTGTCGTTG
AGGGAGAGATTGTTTTATAGGTTATGGGCTGCCCTAACTGGCTGGAAGAT
AAGCCCTGTACATCCACTACAAGTATGCAGGAATATGAGAGCAACCAAGC
TGGATCAGGGATCATCATGGGTGTCTCATGTTGGCTGTGGAACATGGACG
AAGAAGTTGTCAAGTATACAAGATACTAAAACACTTGATTATTGGACCAG
AAGCTCTGTTGAAAGGTGGTGTTTAGTACATAAAGCAAGTTTTTGAATCC
AAAACAGTCAACAATGGGAATCAATGGCTCCAACAGCTTTGTTCAATGCA
AAAAATGAAGCAAATAAAATTGGGGATAACGAAATTCTTTCTTGGGCCCC
AATTGTTGGGGGCAAGGTTGGGGGTTACCACAAATAAAAAAAAAAAAACC
AATTTTGCTTCCAAATTGAGTTTCCAAATTAATTTTTAGGTTAAAAGGAG
GGAATTACTTGGCTTTCAACCACAAAATCGAAACCTTTTCAAAAAAAAAA
CTTAGGTGCCTTAAATAACCCTGGAAAAACAGGGATGTTTACCAAAGTGG
CACAACCAAAAACATGTCTAAAAAAAAAAAAAAACAAAAAAATTTTTTTG
GAATTTTTTTTTTTTTCCCCCATGATTTTATTAAAAAAAAAAAAATTTTT
GCAGGCGTTGATTTTTTTGTGCTTTTTCATGACATTAATTATTGTACTGC
TTTATCTTATGAATCCAAGGAACGAAAGAGTCGACAATAAAATTTAAACA
AAAAAATAAAAACCA
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