EY649573

Overview
NameEY649573
Unique NameEY649573
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length912
Libraries
Library NameType
Sweet orange leaf, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY649573_ssr553 microsatellite EY649573_ssr553:553..570. BLAST: Citrus ESTs to Prunus persica proteins V1
EY649573_ssr302 microsatellite EY649573_ssr302:302..313. BLAST: Citrus ESTs to Prunus persica proteins V1
EY649573_ssr334 microsatellite EY649573_ssr334:334..345. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
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BLAST of EY649573 vs. ExPASy Swiss-Prot
Match: CML44_ARATH (Probable calcium-binding protein CML44 OS=Arabidopsis thaliana GN=CML44 PE=1 SV=2)

HSP 1 Score: 102.064 bits (253), Expect = 4.787e-21
Identity = 62/159 (38.99%), Postives = 90/159 (56.60%), Query Frame = 1 
Query:  358 LTANDLQRIFEKLDRNGDGLVSLEELNWVLERIG-VHFTLEELEALVEKPSLCFDEFL-FFCDSIISXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLYKAFSVFDVNGDGXXYSEELQSVVARLGLGDEKSSPDGRSMIYVYDTHSDGGSGFEEFR 828
            +T NDL+R+F+ LD+N DGLV+L+EL W+L+++G    T +ELE +V K SL  DEFL F+ D+++                                 + +AF+VFDVNGDG   +EEL+ V+ RLG  +E  + D   MI V+D + DG   FEEF+
Sbjct:    6 ITTNDLRRMFKTLDKNQDGLVTLDELLWILDKLGWAEHTPDELELIVGKQSLDLDEFLRFYYDAVLD---------------SKGSKKNIDVVADNDEAIARAFNVFDVNGDGYISAEELRDVLERLGFEEEAKAWDCGRMIRVHDKNLDGFVDFEEFK 149
The following BLAST results are available for this feature:
BLAST of EY649573 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
CML44_ARATH4.787e-2138.99Probable calcium-binding protein CML44 OS=Arabidop... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-100-001-B05-CT.F Sweet orange leaf, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY649573 ID=EY649573; Name=EY649573; organism=Citrus sinensis; type=EST; length=912bp
TGTGAAGCTACATTATTTGGAGGAGGATAGGTATGGAAGTTTAACCACAA
AAAAGAATAAAAACATAAAAGATCTTAGCCAGAAAACTAAATGAAACCAG
AAACCCTAAAGATTATATCAATTTTGCAATCAAAGAGACAAAGACCCTTG
CCGGCCCACGAACCTTCTTGCTAGCTTCCTCAGCTCTCTTGTTACCACAA
CATCATTGTTTCATTTTCTCATATAAATCTCTATATAAACCCAGTAAAGT
GTTAAATCTAGAGTCAGTGGAAATGTAGAACTGGAATTGCATCTCTGGAT
TGTTAGTTAGTTAATTAGCATTGTATATTATTGTCACTCACTCACAATAT
GGCTCCTCTTACCGCCAATGACTTGCAAAGAATTTTCGAGAAGCTTGATC
GAAATGGCGATGGCCTGGTGAGCTTGGAGGAACTCAACTGGGTTCTTGAA
AGAATTGGGGTACATTTTACCCTTGAAGAGCTTGAAGCCCTAGTTGAAAA
ACCAAGCCTCTGCTTCGATGAATTCTTGTTCTTCTGTGATTCCATCATAT
CGAATAATAATAATAATAATCCCAATGCTGCTGCTGATGCTTCCCAGAAT
GCTGATGAAGCAGCTGATGATGACAGCGGCGACGAAGAGATCAGTGATCT
TTACAAAGCGTTCAGTGTGTTCGATGTGAATGGTGATGGATNCANTTACA
GCGAAGAGCTTCAGAGTGTGGTGGCGAGACTCGGATTGGGGGATGAGAAA
AGCAGCCCAGATGGCAGAAGCATGATTTACGTGTATGATACCCATTCTGA
TGGGGGTTCTGGATTTGAAGAATTCAGAACATGATGCTTCGNAANACTGT
TCCTTAATCGGTAATAAATTCCGGGCTGGTAATCTGACCTGGTTTTTTTT
TTTTTTAAATCG
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