DY305460

Overview
NameDY305460
Unique NameDY305460
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length701
Libraries
Library NameType
SLHcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1219 contig Csv1_Contig1219:381..1081. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY305460 vs. ExPASy Swiss-Prot
Match: MTPC1_ARATH (Metal tolerance protein C1 OS=Arabidopsis thaliana GN=MTPC1 PE=2 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 9.274e-34
Identity = 74/105 (70.48%), Postives = 88/105 (83.81%), Query Frame = 1
Query:   46 RADAVSSVVALIGVGGSILGVKFLDPLAGLVISGIILKAGLEMGYQSVLELVDAAIPVENLMPI*PAENLTPIQETILKVEGVKGCHRLRGRRASSPLYLDVHIV 360
            R+DA+SS+VAL+GVGGSILGV FLDPLAGLV+S +I+ AGL+ G+QS+LELVDAAI         PA+ L PI++TIL+VEGVKGCHRLRGRRA S LYLDVHIV
Sbjct:  234 RSDAISSLVALVGVGGSILGVNFLDPLAGLVVSTMIVNAGLKTGHQSILELVDAAI---------PAQQLEPIRQTILQVEGVKGCHRLRGRRAGSSLYLDVHIV 329          
The following BLAST results are available for this feature:
BLAST of DY305460 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
MTPC1_ARATH9.274e-3470.48Metal tolerance protein C1 OS=Arabidopsis thaliana... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAM1AC05RM1 SLH Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY305460 ID=DY305460; Name=DY305460; organism=Citrus sinensis; type=EST; length=701bp
GCTGTGCTAGGTGGTGAAATTTTTGGTAGAACAGATGTAAAAGAACGTGC
TGATGCGGTTTCGTCTGTAGTTGCTCTTATTGGGGTTGGAGGTTCTATTC
TTGGAGTTAAGTTTCTAGATCCCCTTGCCGGTTTAGTTATCTCAGGCATA
ATCCTAAAAGCTGGACTTGAGATGGGTTATCAGAGTGTCTTGGAACTGGT
GGATGCTGCAATCCCAGTAGAAAATTTGATGCCTATATGACCAGCAGAAA
ATTTGACGCCTATACAAGAAACAATACTAAAAGTTGAAGGAGTCAAGGGG
TGCCACCGTTTGAGGGGAAGGAGGGCAAGTTCACCTCTGTACCTTGATGT
GCATATTGTGGAAGCTTGCAGGTCGCTTTGTAAGTTTCAATTTTCGTTTA
GAGTGCTATCGGAAGATGATATTGTTGCTGGAACTTTTACAGGAAGTCTT
GCTAGAAATCTTATTGTTGGAGTACTTGCATTAATTTTTGGAAGTTTTGT
TGGGTAACTTGGCTTGGTGGCTGGAATTCTTATTGCTTTTCTTAGAGTTT
GATTGGAATTTGACTGCAATTTAATACTTTGGGATGGATTTTTCAATTTG
GGATGTTTTATTATGTATTGGTGGAGATCACATTGGATATTAGATGTATT
TCTTTTTAAATTAATTTTTGGATTGAATGAATGTTAATTGATATTTTTTG
T
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