DY305452

Overview
NameDY305452
Unique NameDY305452
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1269
Libraries
Library NameType
SLHcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6656 contig Csv1_Contig6656:1..1269. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of DY305452 vs. ExPASy Swiss-Prot
Match: SSY3_SOLTU (Soluble starch synthase 3, chloroplastic/amyloplastic OS=Solanum tuberosum GN=SS3 PE=1 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 2.976e-25
Identity = 56/62 (90.32%), Postives = 56/62 (90.32%), Query Frame = 1 
Query:    4 GLTQLVAMRYGSIPVVRKTGGLYDTVFDVDHDKERAQALDLEPNGFSFDGADIAGVDYALNR 189
            GLTQL AMRYGSIPVVRKTGGLYDTVFDVDHDKERAQ   LEPNGFSFDGAD  GVDYALNR
Sbjct: 1125 GLTQLTAMRYGSIPVVRKTGGLYDTVFDVDHDKERAQQCGLEPNGFSFDGADAGGVDYALNR 1186

HSP 2 Score: 85.8853 bits (211), Expect = 5.625e-16
Identity = 36/43 (83.72%), Postives = 40/43 (93.02%), Query Frame = 1 
Query:  475 RAISAYYDGREWLNSLCKTVMEQDWSWNRPALDYMELYRAARK 603
            RA+SA+YDGR+W NSLCK VMEQDWSWNRPALDY+ELY AARK
Sbjct: 1186 RALSAWYDGRDWFNSLCKQVMEQDWSWNRPALDYLELYHAARK 1228
The following BLAST results are available for this feature:
BLAST of DY305452 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
SSY3_SOLTU2.976e-2590.32Soluble starch synthase 3, chloroplastic/amyloplas... [more]
back to top
Properties
Property NameValue
Genbank descriptionKN0AAM1AB06RM1 SLH Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY305452 ID=DY305452; Name=DY305452; organism=Citrus sinensis; type=EST; length=1269bp
GGTGGACTGACACAACTTGTGGCTATGAGATATGGTTCAATACCAGTGGT
TCGGAAAACTGGAGGACTTTATGACACTGTATTTGATGTTGACCATGATA
AAGAGAGAGCACAAGCCCTAGATCTTGAACCAAATGGATTTAGTTTTGAT
GGAGCTGATATTGCTGGAGTCGATTATGCTCTTAATAGGTGAGTGAATCT
ATTTCCTGTTCAAGTAAGTCGGCAAATCTACTTTTCTTAAGCGGTAGTCA
TGTAGTTGATTTCAGCATCCATGTTTCTTCATTCCATACTACAAGTAGAT
TATATATTTATGAGGATCTAGAAGGTCAGCCACTTATGATCCCTTTTAAA
CAAAAGCAATCCAGTATGACTTATGACAGTTTCAGGTTTGTCTAGAGCAA
GCATTTTAAATTTGCTGGTATTTCCATTAGTATTGTGTTCCTTTGTATAG
CATTCATTTGGAAATTGATTTTTCAGGGCAATTTCTGCTTATTATGATGG
TCGAGAGTGGTTGAACTCATTATGCAAGACAGTGATGGAGCAAGACTGGT
CTTGGAATCGCCCTGCTCTTGACTATATGGAGCTTTACCGTGCAGCACGC
AAGTGAAATAAGATATTGATCGGGTGGAGAGAACGCGATGCAGCTCATTC
CCATCACACAGTTTGTACAGGTTCAGTGGGATATCTTGTTTGAATATTAA
CTGCATATAGTTCACCCAAGTTGGAATTATATAAGTTCACCCCGAGGCAC
TGTAGAGCTTAATGATGGTTCATCAATTTTCATGTAGCATAAAACATTAC
GCCAGCTTTATAATTTATTATTTCTTAATCGCTGTACATCATGCCTATGA
AGAAGAATAAGAAAACGTATCGGTAGTAAAAGAAATGGCAAAATAAAAAA
ATGGGGATGTTCTTTTGAAATTCCCCAATCGAAGAATGATTGGGTAAAAG
ACCACTATTTTGATTTATTAAAAAAAAAAAAAAAAAAACCCCGGGGGGGG
CCCCGGACCCCTTTCCCCCAAATGGGAGCCCAATAAAATTCCCCGGGCCG
TCCTTTTACACCCCCCTGGCCGGGAAAAACCCCGGCCGTCCCCCCCTTTA
ACCCCCCTTGCCCCACCCCCCCCCTTTTCCCCGGCGGGGGGATAAAACCA
AAAAGGCCCCCCCCCCCCTTCCCCCCCTTTCCCCCCCAGGTGCCCCCCCC
CCCGAGGGGGGGCAAAGGGGAAAAAATTGTGTTAGCGGGTTTATATATAT
TTTTTTGTTTTTTTTATTT
back to top