EY684528

Overview
NameEY684528
Unique NameEY684528
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length585
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10914 contig Csv1_Contig10914:1..584. BLAST: Citrus Unigene V1 Contigs to SwissProt
Homology
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BLAST of EY684528 vs. ExPASy Swiss-Prot
Match: SOXC_RHOSG (Dibenzothiophene desulfurization enzyme C OS=Rhodococcus sp. (strain IGTS8) GN=soxC PE=4 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.770e-15
Identity = 47/133 (35.34%), Postives = 67/133 (50.38%), Query Frame = 2 
Query:   50 QARPWIDSQQDHGWQDPFTIAAIGDLEWRVHGTEAILAKAGVAV----DQALANPNEDTVANASLVVAQAKVLSAETALLASSKLFELAGTRSVSGKHNLDRFWRNARTHTLHDPARWKYHLIGNFVLNGVKP 436
            QARPW  +      +DP+TI + G+    + G +A   +A   +    D+  A   ED      + V+  K L+   AL  SS +FE+ G R    ++  DRFWRN RTH+LHDP  +K   +G   LNG  P
Sbjct:  280 QARPWTPAGIQQATEDPYTIRSYGEFTIALQGADAAAREAAHLLQTVWDKGDALTPEDR-GELMVKVSGVKALATNAALNISSGVFEVIGARGTHPRYGFDRFWRNVRTHSLHDPVSYKIADVGKHTLNGQYP 411
The following BLAST results are available for this feature:
BLAST of EY684528 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
SOXC_RHOSG1.770e-1535.34Dibenzothiophene desulfurization enzyme C OS=Rhodo... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C2-003-001-B05-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY684528 ID=EY684528; Name=EY684528; organism=Citrus sinensis; type=EST; length=585bp
ACCGGTATCGCCCTCGGTGCCCTGGCAACAAGCAAAAATCCATGCACGCC
AGGCCCGGCCCTGGATCGACAGCCAGCAGGATCACGGCTGGCAAGACCCG
TTCACCATCGCCGCCATCGGCGACCTGGAATGGCGGGTCCACGGCACCGA
AGCGATCCTCGCCAAGGCCGGCGTTGCCGTAGACCAGGCCCTGGCCAACC
CCAACGAAGACACCGTGGCCAATGCCTCGCTGGTGGTCGCCCAGGCCAAG
GTGCTTTCAGCCGAAACCGCGTTGCTCGCGAGCAGCAAACTCTTCGAACT
GGCCGGCACCCGCTCGGTGTCCGGCAAGCACAACCTCGACCGTTTCTGGC
GCAACGCGCGCACCCACACCTTGCATGACCCGGCCCGCTGGAAATACCAC
TTGATCGGCAACTTTGTGCTCAACGGCGTCAAGCCCGCACGCCACGCCTG
GAACTGAGGAGCTTCATCCATGACCGCACTGAATCAGGCGCGCCAACTGC
TGGAAAGTACCCGGCGCTTTGTCGAGAAAAGTGATGACCCCTACGTGATC
AGCCGCTTCGGCGATTTGCAGATTCGCGTGGAGGT
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