CX300683

Overview
NameCX300683
Unique NameCX300683
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length576
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300683 vs. ExPASy Swiss-Prot
Match: CSK2A_NEUCR (Casein kinase II subunit alpha OS=Neurospora crassa GN=cka PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 2.502e-30
Identity = 34/52 (65.38%), Postives = 41/52 (78.85%), Query Frame = -1
Query:  286 QEKPWGRFVTPENQHLVSEEALDLINRLLRYDHQERLTAQEAMAHPYFLPIR 441
            Q KPW  F+  ENQ  VS EA+D +++LLRYDH ERLTA+EAMAHPYF P+R
Sbjct:  270 QRKPWHSFINAENQRFVSNEAIDFLDKLLRYDHNERLTAKEAMAHPYFAPVR 321          

HSP 2 Score: 72.4034 bits (176), Expect = 2.502e-30
Identity = 32/47 (68.09%), Postives = 40/47 (85.11%), Query Frame = -3
Query:  434 FHGHDNHDQLVKIAKVLGTDELYDYLEKYDIELDSQFEGLLTSYARK 574
            FHG  N DQLVKIAKVLGTDEL+DYL+KY+IELD+Q++ +L  + RK
Sbjct:  226 FHGQSNSDQLVKIAKVLGTDELFDYLDKYEIELDAQYDDILGRFQRK 272          
BLAST of CX300683 vs. ExPASy Swiss-Prot
Match: CSK21_CHICK (Casein kinase II subunit alpha OS=Gallus gallus GN=CSNK2A1 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.250e-30
Identity = 36/49 (73.47%), Postives = 40/49 (81.63%), Query Frame = -1
Query:  289 KPWGRFVTPENQHLVSEEALDLINRLLRYDHQERLTAQEAMAHPYFLPI 435
            K W RFV  ENQHLVS EALD +++LLRYDHQ RLTA+EAM HPYF PI
Sbjct:  279 KRWERFVHSENQHLVSPEALDFLDKLLRYDHQSRLTAREAMEHPYFYPI 327          

HSP 2 Score: 73.9442 bits (180), Expect = 3.250e-30
Identity = 31/47 (65.96%), Postives = 42/47 (89.36%), Query Frame = -3
Query:  434 FHGHDNHDQLVKIAKVLGTDELYDYLEKYDIELDSQFEGLLTSYARK 574
            FHGHDN+DQLV+IAKVLGT++LYDY++KY+IELD +F  +L  ++RK
Sbjct:  233 FHGHDNYDQLVRIAKVLGTEDLYDYIDKYNIELDPRFNDILGRHSRK 279          
BLAST of CX300683 vs. ExPASy Swiss-Prot
Match: CSK21_XENLA (Casein kinase II subunit alpha OS=Xenopus laevis GN=csnk2a1 PE=2 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 5.510e-30
Identity = 36/49 (73.47%), Postives = 40/49 (81.63%), Query Frame = -1
Query:  289 KPWGRFVTPENQHLVSEEALDLINRLLRYDHQERLTAQEAMAHPYFLPI 435
            K W RFV  ENQHLVS EALD +++LLRYDHQ RLTA+EAM HPYF PI
Sbjct:  279 KRWERFVHSENQHLVSPEALDFLDKLLRYDHQTRLTAREAMDHPYFYPI 327          

HSP 2 Score: 73.9442 bits (180), Expect = 5.510e-30
Identity = 31/47 (65.96%), Postives = 42/47 (89.36%), Query Frame = -3
Query:  434 FHGHDNHDQLVKIAKVLGTDELYDYLEKYDIELDSQFEGLLTSYARK 574
            FHGHDN+DQLV+IAKVLGT++LYDY++KY+IELD +F  +L  ++RK
Sbjct:  233 FHGHDNYDQLVRIAKVLGTEDLYDYIDKYNIELDPRFNDILGRHSRK 279          
BLAST of CX300683 vs. ExPASy Swiss-Prot
Match: CSK2A_DROME (Casein kinase II subunit alpha OS=Drosophila melanogaster GN=CkIIalpha PE=1 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 7.192e-30
Identity = 36/49 (73.47%), Postives = 42/49 (85.71%), Query Frame = -1
Query:  289 KPWGRFVTPENQHLVSEEALDLINRLLRYDHQERLTAQEAMAHPYFLPI 435
            K W RFV  +NQHLVS EALD +++LLRYDH +RLTA+EAMAHPYFLPI
Sbjct:  277 KRWERFVHSDNQHLVSPEALDFLDKLLRYDHVDRLTAREAMAHPYFLPI 325          

HSP 2 Score: 72.0182 bits (175), Expect = 7.192e-30
Identity = 31/47 (65.96%), Postives = 41/47 (87.23%), Query Frame = -3
Query:  434 FHGHDNHDQLVKIAKVLGTDELYDYLEKYDIELDSQFEGLLTSYARK 574
            FHGHDN+DQLV+IAKVLGT+ELY YL+KY+I+LD +F  +L  ++RK
Sbjct:  231 FHGHDNYDQLVRIAKVLGTEELYAYLDKYNIDLDPRFHDILQRHSRK 277          
BLAST of CX300683 vs. ExPASy Swiss-Prot
Match: CSK2A_SPOFR (Casein kinase II subunit alpha OS=Spodoptera frugiperda PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.586e-29
Identity = 37/54 (68.52%), Postives = 40/54 (74.07%), Query Frame = -1
Query:  274 KPWGRFVTPENQHLVSEEALDLINRLLRYDHQERLTAQEAMAHPYFLPIRSNDG 435
            K W RFV  ENQHLVS EALD ++RLLRYDH ER TA+EAM HPYF PI    G
Sbjct:  279 KRWERFVHSENQHLVSPEALDFLDRLLRYDHYERYTAREAMDHPYFYPIVKEQG 332          

HSP 2 Score: 72.0182 bits (175), Expect = 1.586e-29
Identity = 31/47 (65.96%), Postives = 41/47 (87.23%), Query Frame = -3
Query:  434 FHGHDNHDQLVKIAKVLGTDELYDYLEKYDIELDSQFEGLLTSYARK 574
            FHGHDN+DQLV+IAKVLGT+EL++YL+KY IELD +F  +L  ++RK
Sbjct:  233 FHGHDNYDQLVRIAKVLGTEELFEYLDKYHIELDPRFNDILGRHSRK 279          
BLAST of CX300683 vs. ExPASy Swiss-Prot
Match: CSK22_ARATH (Casein kinase II subunit alpha-2 OS=Arabidopsis thaliana GN=CKA2 PE=2 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 2.067e-29
Identity = 32/51 (62.75%), Postives = 44/51 (86.27%), Query Frame = -1
Query:  283 KPWGRFVTPENQHLVSEEALDLINRLLRYDHQERLTAQEAMAHPYFLPIRS 435
            KPW +F+  +N+HLVS EA+D +++LLRYDHQ+RLTA+EAMAHPYF  +R+
Sbjct:  274 KPWSKFINADNRHLVSPEAIDYLDKLLRYDHQDRLTAKEAMAHPYFAQVRA 324          

HSP 2 Score: 70.0922 bits (170), Expect = 2.067e-29
Identity = 33/51 (64.71%), Postives = 39/51 (76.47%), Query Frame = -3
Query:  422 FHGHDNHDQLVKIAKVLGTDELYDYLEKYDIELDSQFEGLLTSYARKAMGK 574
            F+GHDN DQLVKIAKVLGTDEL  YL KY +ELD+Q E L+  ++RK   K
Sbjct:  228 FYGHDNQDQLVKIAKVLGTDELNAYLNKYQLELDTQLEALVGRHSRKPWSK 278          
BLAST of CX300683 vs. ExPASy Swiss-Prot
Match: CSK21_RAT (Casein kinase II subunit alpha OS=Rattus norvegicus GN=Csnk2a1 PE=1 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 3.495e-29
Identity = 34/49 (69.39%), Postives = 39/49 (79.59%), Query Frame = -1
Query:  289 KPWGRFVTPENQHLVSEEALDLINRLLRYDHQERLTAQEAMAHPYFLPI 435
            K W RFV  ENQHLVS EALD +++LLRYDHQ RLTA+EAM HPYF  +
Sbjct:  279 KRWERFVHSENQHLVSPEALDFLDKLLRYDHQSRLTAREAMEHPYFYTV 327          

HSP 2 Score: 73.9442 bits (180), Expect = 3.495e-29
Identity = 31/47 (65.96%), Postives = 42/47 (89.36%), Query Frame = -3
Query:  434 FHGHDNHDQLVKIAKVLGTDELYDYLEKYDIELDSQFEGLLTSYARK 574
            FHGHDN+DQLV+IAKVLGT++LYDY++KY+IELD +F  +L  ++RK
Sbjct:  233 FHGHDNYDQLVRIAKVLGTEDLYDYIDKYNIELDPRFNDILGRHSRK 279          
BLAST of CX300683 vs. ExPASy Swiss-Prot
Match: CSK21_RABIT (Casein kinase II subunit alpha OS=Oryctolagus cuniculus GN=CSNK2A1 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.495e-29
Identity = 34/49 (69.39%), Postives = 39/49 (79.59%), Query Frame = -1
Query:  289 KPWGRFVTPENQHLVSEEALDLINRLLRYDHQERLTAQEAMAHPYFLPI 435
            K W RFV  ENQHLVS EALD +++LLRYDHQ RLTA+EAM HPYF  +
Sbjct:  279 KRWERFVHSENQHLVSPEALDFLDKLLRYDHQSRLTAREAMEHPYFYTV 327          

HSP 2 Score: 73.9442 bits (180), Expect = 3.495e-29
Identity = 31/47 (65.96%), Postives = 42/47 (89.36%), Query Frame = -3
Query:  434 FHGHDNHDQLVKIAKVLGTDELYDYLEKYDIELDSQFEGLLTSYARK 574
            FHGHDN+DQLV+IAKVLGT++LYDY++KY+IELD +F  +L  ++RK
Sbjct:  233 FHGHDNYDQLVRIAKVLGTEDLYDYIDKYNIELDPRFNDILGRHSRK 279          
BLAST of CX300683 vs. ExPASy Swiss-Prot
Match: CSK21_HUMAN (Casein kinase II subunit alpha OS=Homo sapiens GN=CSNK2A1 PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.495e-29
Identity = 34/49 (69.39%), Postives = 39/49 (79.59%), Query Frame = -1
Query:  289 KPWGRFVTPENQHLVSEEALDLINRLLRYDHQERLTAQEAMAHPYFLPI 435
            K W RFV  ENQHLVS EALD +++LLRYDHQ RLTA+EAM HPYF  +
Sbjct:  279 KRWERFVHSENQHLVSPEALDFLDKLLRYDHQSRLTAREAMEHPYFYTV 327          

HSP 2 Score: 73.9442 bits (180), Expect = 3.495e-29
Identity = 31/47 (65.96%), Postives = 42/47 (89.36%), Query Frame = -3
Query:  434 FHGHDNHDQLVKIAKVLGTDELYDYLEKYDIELDSQFEGLLTSYARK 574
            FHGHDN+DQLV+IAKVLGT++LYDY++KY+IELD +F  +L  ++RK
Sbjct:  233 FHGHDNYDQLVRIAKVLGTEDLYDYIDKYNIELDPRFNDILGRHSRK 279          
BLAST of CX300683 vs. ExPASy Swiss-Prot
Match: CSK21_BOVIN (Casein kinase II subunit alpha OS=Bos taurus GN=CSNK2A1 PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.495e-29
Identity = 34/49 (69.39%), Postives = 39/49 (79.59%), Query Frame = -1
Query:  289 KPWGRFVTPENQHLVSEEALDLINRLLRYDHQERLTAQEAMAHPYFLPI 435
            K W RFV  ENQHLVS EALD +++LLRYDHQ RLTA+EAM HPYF  +
Sbjct:  279 KRWERFVHSENQHLVSPEALDFLDKLLRYDHQSRLTAREAMEHPYFYTV 327          

HSP 2 Score: 73.9442 bits (180), Expect = 3.495e-29
Identity = 31/47 (65.96%), Postives = 42/47 (89.36%), Query Frame = -3
Query:  434 FHGHDNHDQLVKIAKVLGTDELYDYLEKYDIELDSQFEGLLTSYARK 574
            FHGHDN+DQLV+IAKVLGT++LYDY++KY+IELD +F  +L  ++RK
Sbjct:  233 FHGHDNYDQLVRIAKVLGTEDLYDYIDKYNIELDPRFNDILGRHSRK 279          
The following BLAST results are available for this feature:
BLAST of CX300683 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 26
Match NameE-valueIdentityDescription
CSK2A_NEUCR2.502e-3065.38Casein kinase II subunit alpha OS=Neurospora crass... [more]
CSK21_CHICK3.250e-3073.47Casein kinase II subunit alpha OS=Gallus gallus GN... [more]
CSK21_XENLA5.510e-3073.47Casein kinase II subunit alpha OS=Xenopus laevis G... [more]
CSK2A_DROME7.192e-3073.47Casein kinase II subunit alpha OS=Drosophila melan... [more]
CSK2A_SPOFR1.586e-2968.52Casein kinase II subunit alpha OS=Spodoptera frugi... [more]
CSK22_ARATH2.067e-2962.75Casein kinase II subunit alpha-2 OS=Arabidopsis th... [more]
CSK21_RAT3.495e-2969.39Casein kinase II subunit alpha OS=Rattus norvegicu... [more]
CSK21_RABIT3.495e-2969.39Casein kinase II subunit alpha OS=Oryctolagus cuni... [more]
CSK21_HUMAN3.495e-2969.39Casein kinase II subunit alpha OS=Homo sapiens GN=... [more]
CSK21_BOVIN3.495e-2969.39Casein kinase II subunit alpha OS=Bos taurus GN=CS... [more]

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Properties
Property NameValue
Genbank descriptionC08001B02SK PhyRootSw1 Citrus sinensis cDNA clone C08001B02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300683 ID=CX300683; Name=CX300683; organism=Citrus sinensis; type=EST; length=576bp
CTCGTGCCGAATTCGGCACGAGGTTTTTTTTTTTTTTTTTGAATCATTTC
AATTTGTTAATATTATGATATGATATAGATAGATGAAGGACTTTTAAACT
TCTCTGAAATCTCCTCCCACAAAACAAACAAAAGGTACAAACAAAAATCA
TGATTATGTTATTTATTATATATCACTCTTCCATCTCATCTCAACATTCC
GTTATGAGAGAGGAATAACTCTTCAATCACTATCGACTAATGATATAACT
TCTTCCTTCTTTGTAGGATAGTCACCATCATTGGATCGTATTGGAAGGAA
ATAAGGATGAGCCATAGCTTCTTGGGCTGTTAAGCGCTCTTGATGATCAT
ATCTGAGCAATCTATTAATTAAATCTAAAGCTTCTTCAGAAACTAGATGT
TGATTTTCTGGAGTAACAAATCTTCCCCATGGCTTTTCTTGCATAAGAGG
TTAAAAGACCTTCAAACTGACTATCCAACTCTATATCATACTTCTCCAAA
TAATCATAAAGTTCATCTGTACCCAGAACCTTAGCTATCTTCACTAACTG
ATCATGATTATCATGTCCATGAAAGA
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