CX300680

Overview
NameCX300680
Unique NameCX300680
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length527
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300680 vs. ExPASy Swiss-Prot
Match: RPC10_MOUSE (DNA-directed RNA polymerase III subunit RPC10 OS=Mus musculus GN=Polr3k PE=2 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 3.725e-24
Identity = 51/105 (48.57%), Postives = 61/105 (58.10%), Query Frame = 2
Query:   29 FCPXXXXXXXXXXXXXXMRFCCPTCPYLQTVNKVYTSRAKIKKKQVDDVLGGDDAWENVDKTTAKCPACAYTEAYFMQIQIRSADEPSTTFYRC--VKCSKQWND 337
            FCP               RF C TCPY+  + +  T+R   K K+VDDVLGG  AWENVD T   CP C +  AYFMQ+Q RSADEP TTFY+C   +C  +W D
Sbjct:    4 FCPGCGNGLIVEEGQRCHRFACNTCPYVHNITRKVTNRKYPKLKEVDDVLGGAAAWENVDSTAEPCPKCEHPRAYFMQLQTRSADEPMTTFYKCCNAQCGHRWRD 108          
BLAST of CX300680 vs. ExPASy Swiss-Prot
Match: RPC10_HUMAN (DNA-directed RNA polymerase III subunit RPC10 OS=Homo sapiens GN=POLR3K PE=1 SV=2)

HSP 1 Score: 110.923 bits (276), Expect = 3.725e-24
Identity = 51/105 (48.57%), Postives = 61/105 (58.10%), Query Frame = 2
Query:   29 FCPXXXXXXXXXXXXXXMRFCCPTCPYLQTVNKVYTSRAKIKKKQVDDVLGGDDAWENVDKTTAKCPACAYTEAYFMQIQIRSADEPSTTFYRC--VKCSKQWND 337
            FCP               RF C TCPY+  + +  T+R   K K+VDDVLGG  AWENVD T   CP C +  AYFMQ+Q RSADEP TTFY+C   +C  +W D
Sbjct:    4 FCPGCGNGLIVEEGQRCHRFSCNTCPYVHNITRKVTNRKYPKLKEVDDVLGGAAAWENVDSTAESCPKCEHPRAYFMQLQTRSADEPMTTFYKCCNAQCGHRWRD 108          
BLAST of CX300680 vs. ExPASy Swiss-Prot
Match: RPC10_BOVIN (DNA-directed RNA polymerase III subunit RPC10 OS=Bos taurus GN=POLR3K PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 7.025e-23
Identity = 50/105 (47.62%), Postives = 59/105 (56.19%), Query Frame = 2
Query:   29 FCPXXXXXXXXXXXXXXMRFCCPTCPYLQTVNKVYTSRAKIKKKQVDDVLGGDDAWENVDKTTAKCPACAYTEAYFMQIQIRSADEPSTTFYRC--VKCSKQWND 337
            FCP               RF C TCPY+  V +  T+R   K K+VDD LGG  AWENVD T   CP C +  AYFMQ+Q R ADEP TTFY+C   +C  +W D
Sbjct:    4 FCPGCGNGLIVEEGQRCHRFACNTCPYVHNVTRKVTNRKYPKLKEVDDELGGAAAWENVDSTAEPCPKCEHPRAYFMQLQTRYADEPMTTFYKCCNAQCGHRWRD 108          
BLAST of CX300680 vs. ExPASy Swiss-Prot
Match: RPC10_SCHPO (DNA-directed RNA polymerase III subunit RPC10 OS=Schizosaccharomyces pombe GN=rpc11 PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 1.791e-18
Identity = 43/87 (49.43%), Postives = 56/87 (64.37%), Query Frame = 2
Query:   86 FCCPTCPYLQTVNKVYTSRAKIKKKQVDDVLGGDDAWENVDKTTAKCP--ACAYTEAYFMQIQIRSADEPSTTFYRCVKCSKQWNDN 340
            F C TCPY   ++    SR +  +K+VDDVLGG++A+E+  +T   C    C    AYF Q+QIRSADEP +TFYRC KC  QW +N
Sbjct:   23 FDCRTCPYHFPISTFLYSRHEFAQKEVDDVLGGEEAFESNQQTEVTCENTKCDNNRAYFFQLQIRSADEPMSTFYRCTKCKFQWREN 109          
BLAST of CX300680 vs. ExPASy Swiss-Prot
Match: RPC10_YEAST (DNA-directed RNA polymerase III subunit RPC10 OS=Saccharomyces cerevisiae GN=RPC11 PE=1 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 2.339e-18
Identity = 43/87 (49.43%), Postives = 56/87 (64.37%), Query Frame = 2
Query:   92 CPTCPYLQTVNKVYT-SRAKIKKKQVDDVLGGDDAWENVDKTTAKCP---ACAYTEAYFMQIQIRSADEPSTTFYRCVKCSKQWNDN 340
            C +CPY   +  +    R K+ +K+VDDVLGG   W+NVD+T  +CP    C    AYF Q+QIRSADEP TTFY+CV C  +W +N
Sbjct:   26 CRSCPYEFPIEGIEIYDRKKLPRKEVDDVLGG--GWDNVDQTKTQCPNYDTCGGESAYFFQLQIRSADEPMTTFYKCVNCGHRWKEN 110          
BLAST of CX300680 vs. ExPASy Swiss-Prot
Match: RPOM_SULAC (DNA-directed RNA polymerase subunit M OS=Sulfolobus acidocaldarius GN=rpoM PE=3 SV=2)

HSP 1 Score: 67.0106 bits (162), Expect = 6.169e-11
Identity = 39/109 (35.78%), Postives = 49/109 (44.95%), Query Frame = 2
Query:   23 MHFCPXXXXXXXXXXXXXXMRFCCPTCPYLQTVNKV---YTSRAKIKKKQVDDVLGGDDAWENVDKTTA-KCPACAYTEAYFMQIQIRSADEPSTTFYRCVKCSKQWND 337
            M FCP                + C  C Y+ T N+     T+  K   K+   VL  D     V  T    CP+C   EAYF  +Q RSADEP+T FY+C KC K W +
Sbjct:    1 MKFCPKCGSMMMPRKENGKTVYKCSKCGYIDTENQKEAKITTVIKHSAKEKTLVLESDMPKTGVQLTRGISCPSCGNDEAYFWILQTRSADEPATRFYKCTKCGKVWRE 109          
The following BLAST results are available for this feature:
BLAST of CX300680 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
RPC10_MOUSE3.725e-2448.57DNA-directed RNA polymerase III subunit RPC10 OS=M... [more]
RPC10_HUMAN3.725e-2448.57DNA-directed RNA polymerase III subunit RPC10 OS=H... [more]
RPC10_BOVIN7.025e-2347.62DNA-directed RNA polymerase III subunit RPC10 OS=B... [more]
RPC10_SCHPO1.791e-1849.43DNA-directed RNA polymerase III subunit RPC10 OS=S... [more]
RPC10_YEAST2.339e-1849.43DNA-directed RNA polymerase III subunit RPC10 OS=S... [more]
RPOM_SULAC6.169e-1135.78DNA-directed RNA polymerase subunit M OS=Sulfolobu... [more]
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Properties
Property NameValue
Genbank descriptionC08001A11SK PhyRootSw1 Citrus sinensis cDNA clone C08001A11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300680 ID=CX300680; Name=CX300680; organism=Citrus sinensis; type=EST; length=527bp
GATCAAGAGTAAGTCTGAGAGGATGCATTTTTGTCCTTTATGTGGAAATT
TACTTCTACTTGAAGAAGGAACAGGTGGAATGAGATTTTGTTGCCCAACT
TGTCCCTATCTTCAAACTGTAAATAAAGTGTATACAAGTCGAGCAAAGAT
CAAGAAGAAGCAAGTAGATGATGTTTTAGGTGGTGATGATGCTTGGGAAA
ATGTCGATAAAACAACAGCAAAATGTCCTGCATGTGCTTATACTGAAGCT
TACTTTATGCAGATTCAAATTAGAAGTGCTGATGAACCTTCCACAACCTT
CTATCGATGTGTGAAATGCTCAAAACAATGGAATGATAACTCGTAACGAT
CTATTGAAGGGATTCTTCAATACATTTATGATTATTTGTGTGTATATTAT
TCATTGGATTGTATAGAGGGGATGATAGGTAAAAAGTCTAATAACTAGTC
GATGAGGAGATCGATTAGCATAAACTAATCTTTGTAAAGGAAATAATCAA
AGAATATTGCAAAAAAAAAAAAAAAAA
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