CX300680
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX300680 vs. ExPASy Swiss-Prot
Match: RPC10_MOUSE (DNA-directed RNA polymerase III subunit RPC10 OS=Mus musculus GN=Polr3k PE=2 SV=1) HSP 1 Score: 110.923 bits (276), Expect = 3.725e-24 Identity = 51/105 (48.57%), Postives = 61/105 (58.10%), Query Frame = 2 Query: 29 FCPXXXXXXXXXXXXXXMRFCCPTCPYLQTVNKVYTSRAKIKKKQVDDVLGGDDAWENVDKTTAKCPACAYTEAYFMQIQIRSADEPSTTFYRC--VKCSKQWND 337 FCP RF C TCPY+ + + T+R K K+VDDVLGG AWENVD T CP C + AYFMQ+Q RSADEP TTFY+C +C +W D Sbjct: 4 FCPGCGNGLIVEEGQRCHRFACNTCPYVHNITRKVTNRKYPKLKEVDDVLGGAAAWENVDSTAEPCPKCEHPRAYFMQLQTRSADEPMTTFYKCCNAQCGHRWRD 108
BLAST of CX300680 vs. ExPASy Swiss-Prot
Match: RPC10_HUMAN (DNA-directed RNA polymerase III subunit RPC10 OS=Homo sapiens GN=POLR3K PE=1 SV=2) HSP 1 Score: 110.923 bits (276), Expect = 3.725e-24 Identity = 51/105 (48.57%), Postives = 61/105 (58.10%), Query Frame = 2 Query: 29 FCPXXXXXXXXXXXXXXMRFCCPTCPYLQTVNKVYTSRAKIKKKQVDDVLGGDDAWENVDKTTAKCPACAYTEAYFMQIQIRSADEPSTTFYRC--VKCSKQWND 337 FCP RF C TCPY+ + + T+R K K+VDDVLGG AWENVD T CP C + AYFMQ+Q RSADEP TTFY+C +C +W D Sbjct: 4 FCPGCGNGLIVEEGQRCHRFSCNTCPYVHNITRKVTNRKYPKLKEVDDVLGGAAAWENVDSTAESCPKCEHPRAYFMQLQTRSADEPMTTFYKCCNAQCGHRWRD 108
BLAST of CX300680 vs. ExPASy Swiss-Prot
Match: RPC10_BOVIN (DNA-directed RNA polymerase III subunit RPC10 OS=Bos taurus GN=POLR3K PE=3 SV=1) HSP 1 Score: 106.686 bits (265), Expect = 7.025e-23 Identity = 50/105 (47.62%), Postives = 59/105 (56.19%), Query Frame = 2 Query: 29 FCPXXXXXXXXXXXXXXMRFCCPTCPYLQTVNKVYTSRAKIKKKQVDDVLGGDDAWENVDKTTAKCPACAYTEAYFMQIQIRSADEPSTTFYRC--VKCSKQWND 337 FCP RF C TCPY+ V + T+R K K+VDD LGG AWENVD T CP C + AYFMQ+Q R ADEP TTFY+C +C +W D Sbjct: 4 FCPGCGNGLIVEEGQRCHRFACNTCPYVHNVTRKVTNRKYPKLKEVDDELGGAAAWENVDSTAEPCPKCEHPRAYFMQLQTRYADEPMTTFYKCCNAQCGHRWRD 108
BLAST of CX300680 vs. ExPASy Swiss-Prot
Match: RPC10_SCHPO (DNA-directed RNA polymerase III subunit RPC10 OS=Schizosaccharomyces pombe GN=rpc11 PE=2 SV=1) HSP 1 Score: 92.0485 bits (227), Expect = 1.791e-18 Identity = 43/87 (49.43%), Postives = 56/87 (64.37%), Query Frame = 2 Query: 86 FCCPTCPYLQTVNKVYTSRAKIKKKQVDDVLGGDDAWENVDKTTAKCP--ACAYTEAYFMQIQIRSADEPSTTFYRCVKCSKQWNDN 340 F C TCPY ++ SR + +K+VDDVLGG++A+E+ +T C C AYF Q+QIRSADEP +TFYRC KC QW +N Sbjct: 23 FDCRTCPYHFPISTFLYSRHEFAQKEVDDVLGGEEAFESNQQTEVTCENTKCDNNRAYFFQLQIRSADEPMSTFYRCTKCKFQWREN 109
BLAST of CX300680 vs. ExPASy Swiss-Prot
Match: RPC10_YEAST (DNA-directed RNA polymerase III subunit RPC10 OS=Saccharomyces cerevisiae GN=RPC11 PE=1 SV=1) HSP 1 Score: 91.6633 bits (226), Expect = 2.339e-18 Identity = 43/87 (49.43%), Postives = 56/87 (64.37%), Query Frame = 2 Query: 92 CPTCPYLQTVNKVYT-SRAKIKKKQVDDVLGGDDAWENVDKTTAKCP---ACAYTEAYFMQIQIRSADEPSTTFYRCVKCSKQWNDN 340 C +CPY + + R K+ +K+VDDVLGG W+NVD+T +CP C AYF Q+QIRSADEP TTFY+CV C +W +N Sbjct: 26 CRSCPYEFPIEGIEIYDRKKLPRKEVDDVLGG--GWDNVDQTKTQCPNYDTCGGESAYFFQLQIRSADEPMTTFYKCVNCGHRWKEN 110
BLAST of CX300680 vs. ExPASy Swiss-Prot
Match: RPOM_SULAC (DNA-directed RNA polymerase subunit M OS=Sulfolobus acidocaldarius GN=rpoM PE=3 SV=2) HSP 1 Score: 67.0106 bits (162), Expect = 6.169e-11 Identity = 39/109 (35.78%), Postives = 49/109 (44.95%), Query Frame = 2 Query: 23 MHFCPXXXXXXXXXXXXXXMRFCCPTCPYLQTVNKV---YTSRAKIKKKQVDDVLGGDDAWENVDKTTA-KCPACAYTEAYFMQIQIRSADEPSTTFYRCVKCSKQWND 337 M FCP + C C Y+ T N+ T+ K K+ VL D V T CP+C EAYF +Q RSADEP+T FY+C KC K W + Sbjct: 1 MKFCPKCGSMMMPRKENGKTVYKCSKCGYIDTENQKEAKITTVIKHSAKEKTLVLESDMPKTGVQLTRGISCPSCGNDEAYFWILQTRSADEPATRFYKCTKCGKVWRE 109 The following BLAST results are available for this feature:
BLAST of CX300680 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 6
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >CX300680 ID=CX300680; Name=CX300680; organism=Citrus sinensis; type=EST; length=527bpback to top |