EY659530

Overview
NameEY659530
Unique NameEY659530
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length474
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY659530_ssr139 microsatellite EY659530_ssr139:139..150. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig7486 contig Csv1_Contig7486:1..474. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY659530 vs. ExPASy Swiss-Prot
Match: RS25_SPOFR (40S ribosomal protein S25 OS=Spodoptera frugiperda GN=RpS25 PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 4.181e-31
Identity = 66/80 (82.50%), Postives = 73/80 (91.25%), Query Frame = 1
Query:  166 VRDKLNNQVLFDKASYDKLLKEVPSYKLITPSVVSERLKVHGSLARKALEELRKQGLIKQVVRHHAQVIYTRITKGDDPV 405
            VRDKLNNQVLFDK +Y+KL KEVP YKLITP+VVSERLKV GSLAR+AL ELR++GLIKQVV+HH QVIYTR TKGDDPV
Sbjct:   39 VRDKLNNQVLFDKPTYEKLYKEVPQYKLITPAVVSERLKVRGSLARRALIELREKGLIKQVVQHHGQVIYTRATKGDDPV 118          
BLAST of EY659530 vs. ExPASy Swiss-Prot
Match: RS25_DROME (40S ribosomal protein S25 OS=Drosophila melanogaster GN=RpS25 PE=3 SV=3)

HSP 1 Score: 131.339 bits (329), Expect = 2.075e-30
Identity = 68/113 (60.18%), Postives = 82/113 (72.57%), Query Frame = 1
Query:   61 QKRAQGGSKQPXXXXXXXXXXXXXXXXXXXXXXXXVRDKLNNQVLFDKASYDKLLKEVPSYKLITPSVVSERLKVHGSLARKALEELRKQGLIKQVVRHHAQVIYTRITKGDD 399
            +K A+  +KQP                        VRDKLNNQVLFDKA+Y+KL KEVP+YKLITPSVVSERLK+ GSLA++AL ELR++GLIKQVV+HH+QVIYTR TKGD+
Sbjct:    4 KKDAKSSAKQPQKTQKKKEGSGGGKAKKKKWSKGKVRDKLNNQVLFDKATYEKLYKEVPAYKLITPSVVSERLKIRGSLAKRALIELREKGLIKQVVQHHSQVIYTRATKGDE 116          
BLAST of EY659530 vs. ExPASy Swiss-Prot
Match: RS25_SHEEP (40S ribosomal protein S25 OS=Ovis aries GN=RPS25 PE=2 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 1.818e-26
Identity = 60/78 (76.92%), Postives = 67/78 (85.90%), Query Frame = 1
Query:  166 VRDKLNNQVLFDKASYDKLLKEVPSYKLITPSVVSERLKVHGSLARKALEELRKQGLIKQVVRHHAQVIYTRITKGDD 399
            VRDKLNN VLFDKA+YDKL KEVP+YKLITP+VVSERLK+ GSLAR AL+EL  +GLIK V +H AQVIYTR TKG D
Sbjct:   40 VRDKLNNLVLFDKATYDKLCKEVPNYKLITPAVVSERLKIRGSLARAALQELLSKGLIKLVSKHRAQVIYTRNTKGGD 117          
BLAST of EY659530 vs. ExPASy Swiss-Prot
Match: RS25_RAT (40S ribosomal protein S25 OS=Rattus norvegicus GN=Rps25 PE=2 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 1.818e-26
Identity = 60/78 (76.92%), Postives = 67/78 (85.90%), Query Frame = 1
Query:  166 VRDKLNNQVLFDKASYDKLLKEVPSYKLITPSVVSERLKVHGSLARKALEELRKQGLIKQVVRHHAQVIYTRITKGDD 399
            VRDKLNN VLFDKA+YDKL KEVP+YKLITP+VVSERLK+ GSLAR AL+EL  +GLIK V +H AQVIYTR TKG D
Sbjct:   40 VRDKLNNLVLFDKATYDKLCKEVPNYKLITPAVVSERLKIRGSLARAALQELLSKGLIKLVSKHRAQVIYTRNTKGGD 117          
BLAST of EY659530 vs. ExPASy Swiss-Prot
Match: RS25_MOUSE (40S ribosomal protein S25 OS=Mus musculus GN=Rps25 PE=2 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 1.818e-26
Identity = 60/78 (76.92%), Postives = 67/78 (85.90%), Query Frame = 1
Query:  166 VRDKLNNQVLFDKASYDKLLKEVPSYKLITPSVVSERLKVHGSLARKALEELRKQGLIKQVVRHHAQVIYTRITKGDD 399
            VRDKLNN VLFDKA+YDKL KEVP+YKLITP+VVSERLK+ GSLAR AL+EL  +GLIK V +H AQVIYTR TKG D
Sbjct:   40 VRDKLNNLVLFDKATYDKLCKEVPNYKLITPAVVSERLKIRGSLARAALQELLSKGLIKLVSKHRAQVIYTRNTKGGD 117          
BLAST of EY659530 vs. ExPASy Swiss-Prot
Match: RS25_HUMAN (40S ribosomal protein S25 OS=Homo sapiens GN=RPS25 PE=1 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 1.818e-26
Identity = 60/78 (76.92%), Postives = 67/78 (85.90%), Query Frame = 1
Query:  166 VRDKLNNQVLFDKASYDKLLKEVPSYKLITPSVVSERLKVHGSLARKALEELRKQGLIKQVVRHHAQVIYTRITKGDD 399
            VRDKLNN VLFDKA+YDKL KEVP+YKLITP+VVSERLK+ GSLAR AL+EL  +GLIK V +H AQVIYTR TKG D
Sbjct:   40 VRDKLNNLVLFDKATYDKLCKEVPNYKLITPAVVSERLKIRGSLARAALQELLSKGLIKLVSKHRAQVIYTRNTKGGD 117          
BLAST of EY659530 vs. ExPASy Swiss-Prot
Match: RS25_BOVIN (40S ribosomal protein S25 OS=Bos taurus GN=RPS25 PE=2 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 1.818e-26
Identity = 60/78 (76.92%), Postives = 67/78 (85.90%), Query Frame = 1
Query:  166 VRDKLNNQVLFDKASYDKLLKEVPSYKLITPSVVSERLKVHGSLARKALEELRKQGLIKQVVRHHAQVIYTRITKGDD 399
            VRDKLNN VLFDKA+YDKL KEVP+YKLITP+VVSERLK+ GSLAR AL+EL  +GLIK V +H AQVIYTR TKG D
Sbjct:   40 VRDKLNNLVLFDKATYDKLCKEVPNYKLITPAVVSERLKIRGSLARAALQELLSKGLIKLVSKHRAQVIYTRNTKGGD 117          
BLAST of EY659530 vs. ExPASy Swiss-Prot
Match: RS25_BRABE (40S ribosomal protein S25 OS=Branchiostoma belcheri GN=RPS25 PE=2 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 2.374e-26
Identity = 60/78 (76.92%), Postives = 66/78 (84.62%), Query Frame = 1
Query:  166 VRDKLNNQVLFDKASYDKLLKEVPSYKLITPSVVSERLKVHGSLARKALEELRKQGLIKQVVRHHAQVIYTRITKGDD 399
            VRDKLNN VLFDKA+YDKL KEVPSYKLITPSVVSERLK+ GSLAR AL+EL  +G+IK V +H AQVIYTR TK  D
Sbjct:   36 VRDKLNNLVLFDKATYDKLYKEVPSYKLITPSVVSERLKIRGSLARAALKELHSKGMIKLVSKHSAQVIYTRATKDTD 113          
BLAST of EY659530 vs. ExPASy Swiss-Prot
Match: RS25_DANRE (40S ribosomal protein S25 OS=Danio rerio GN=rps25 PE=2 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 3.101e-26
Identity = 60/78 (76.92%), Postives = 67/78 (85.90%), Query Frame = 1
Query:  166 VRDKLNNQVLFDKASYDKLLKEVPSYKLITPSVVSERLKVHGSLARKALEELRKQGLIKQVVRHHAQVIYTRITKGDD 399
            VRDKLNN VLFDKA+YDKL KEVP+YKLITP+VVSERLK+ GSLAR AL+EL  +GLIK V +H AQVIYTR TKG D
Sbjct:   39 VRDKLNNLVLFDKATYDKLYKEVPNYKLITPAVVSERLKIRGSLARAALQELLGKGLIKLVSKHRAQVIYTRNTKGTD 116          
BLAST of EY659530 vs. ExPASy Swiss-Prot
Match: RS25_ICTPU (40S ribosomal protein S25 OS=Ictalurus punctatus GN=rps25 PE=2 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 1.178e-25
Identity = 59/78 (75.64%), Postives = 66/78 (84.62%), Query Frame = 1
Query:  166 VRDKLNNQVLFDKASYDKLLKEVPSYKLITPSVVSERLKVHGSLARKALEELRKQGLIKQVVRHHAQVIYTRITKGDD 399
            VRDKLNN VLFDKA+YDKL KEVP+YKLITP+VVSERLK+ GSLAR AL EL  +G+IK V +H AQVIYTR TKG D
Sbjct:   39 VRDKLNNLVLFDKATYDKLYKEVPNYKLITPAVVSERLKIRGSLARAALLELLSKGMIKLVSKHRAQVIYTRNTKGTD 116          
The following BLAST results are available for this feature:
BLAST of EY659530 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 26
Match NameE-valueIdentityDescription
RS25_SPOFR4.181e-3182.5040S ribosomal protein S25 OS=Spodoptera frugiperda... [more]
RS25_DROME2.075e-3060.1840S ribosomal protein S25 OS=Drosophila melanogast... [more]
RS25_SHEEP1.818e-2676.9240S ribosomal protein S25 OS=Ovis aries GN=RPS25 P... [more]
RS25_RAT1.818e-2676.9240S ribosomal protein S25 OS=Rattus norvegicus GN=... [more]
RS25_MOUSE1.818e-2676.9240S ribosomal protein S25 OS=Mus musculus GN=Rps25... [more]
RS25_HUMAN1.818e-2676.9240S ribosomal protein S25 OS=Homo sapiens GN=RPS25... [more]
RS25_BOVIN1.818e-2676.9240S ribosomal protein S25 OS=Bos taurus GN=RPS25 P... [more]
RS25_BRABE2.374e-2676.9240S ribosomal protein S25 OS=Branchiostoma belcher... [more]
RS25_DANRE3.101e-2676.9240S ribosomal protein S25 OS=Danio rerio GN=rps25 ... [more]
RS25_ICTPU1.178e-2575.6440S ribosomal protein S25 OS=Ictalurus punctatus G... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-011-B07-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659530 ID=EY659530; Name=EY659530; organism=Citrus sinensis; type=EST; length=474bp
GGTTTTCGGTCCGNATTACCGCCTCGACCCACGCGTCCGGTGATTTTTTA
ACATGGGTCCCAAAAAAGAGCGCAAGGAGGTTCCAAACAGCCCTCCAAAA
CACCTAAAAAGAAGGAGGGAGGATCCGGAGGAAAGGCCAAGAAGAAGAAG
TGGTCAAAAGGAAAAGTTCGTGACAAGTTAAACAATCAAGTTCTCTTCGA
CAAGGCCTCATATGACAAGCTGTTAAAAGAAGTTCCATCATACAAATTAA
TCACTCCATCAGTTGTCAGTGAACGATTGAAGGTCCATGGATCATTAGCA
CGTAAAGCTTTGGAAGAACTCCGTAAACAAGGTCTAATAAAGCAAGTCGT
CAGGCATCATGCTCAGGTTATCTACACTAGAATAACTAAAGGAGATGACC
CCGTGTAATGAAAAACAAATTTGTAAAACTTTTTTAATACATATTTTTAA
GTTAAAAAAAAAAAAAAAAAAAAA
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