DR406123

Overview
NameDR406123
Unique NameDR406123
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length640
Libraries
Library NameType
Mature Juice Sac from Navel Orange in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2589 contig Csv1_Contig2589:432..1071. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DR406123 vs. ExPASy Swiss-Prot
Match: LTI6B_ORYSJ (Hydrophobic protein LTI6B OS=Oryza sativa subsp. japonica GN=LTI6B PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.099e-19
Identity = 42/52 (80.77%), Postives = 48/52 (92.31%), Query Frame = 1
Query:  160 TATCVDILLAVILPPLGVFLKFGCKAEFWVCLLLTILGHIPGIIYAVYAITK 315
            TA C+DIL+A+ILPPLGVFLKFGC  EFW+CLLLT LG+IPGIIYA+YAITK
Sbjct:    4 TANCIDILIAIILPPLGVFLKFGCGHEFWICLLLTFLGYIPGIIYAIYAITK 55          
BLAST of DR406123 vs. ExPASy Swiss-Prot
Match: LTI6B_ORYSI (Hydrophobic protein LTI6B OS=Oryza sativa subsp. indica GN=LTI6B PE=3 SV=2)

HSP 1 Score: 96.6709 bits (239), Expect = 1.099e-19
Identity = 42/52 (80.77%), Postives = 48/52 (92.31%), Query Frame = 1
Query:  160 TATCVDILLAVILPPLGVFLKFGCKAEFWVCLLLTILGHIPGIIYAVYAITK 315
            TA C+DIL+A+ILPPLGVFLKFGC  EFW+CLLLT LG+IPGIIYA+YAITK
Sbjct:    4 TANCIDILIAIILPPLGVFLKFGCGHEFWICLLLTFLGYIPGIIYAIYAITK 55          
BLAST of DR406123 vs. ExPASy Swiss-Prot
Match: LTI6A_ORYSJ (Hydrophobic protein LTI6A OS=Oryza sativa subsp. japonica GN=LTI6A PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 4.175e-19
Identity = 43/57 (75.44%), Postives = 50/57 (87.72%), Query Frame = 1
Query:  145 MADGSTATCVDILLAVILPPLGVFLKFGCKAEFWVCLLLTILGHIPGIIYAVYAITK 315
            MAD STATC+DI+LA+ILPPLGVF KFGC  EFW+CLLLT  G++PGIIYAV+ ITK
Sbjct:    1 MAD-STATCIDIILAIILPPLGVFFKFGCGIEFWICLLLTFFGYLPGIIYAVWVITK 56          
BLAST of DR406123 vs. ExPASy Swiss-Prot
Match: RCI2B_ARATH (Hydrophobic protein RCI2B OS=Arabidopsis thaliana GN=RCI2B PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.072e-18
Identity = 39/53 (73.58%), Postives = 49/53 (92.45%), Query Frame = 1
Query:  157 STATCVDILLAVILPPLGVFLKFGCKAEFWVCLLLTILGHIPGIIYAVYAITK 315
            STAT V+I+LA+ILPPLGVFLKFGCK EFW+CL+LT+ G++PGI+YA+Y ITK
Sbjct:    2 STATFVEIILAIILPPLGVFLKFGCKVEFWICLILTLFGYLPGILYALYIITK 54          
BLAST of DR406123 vs. ExPASy Swiss-Prot
Match: RCI2A_ARATH (Hydrophobic protein RCI2A OS=Arabidopsis thaliana GN=RCI2A PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 3.535e-18
Identity = 38/53 (71.70%), Postives = 49/53 (92.45%), Query Frame = 1
Query:  157 STATCVDILLAVILPPLGVFLKFGCKAEFWVCLLLTILGHIPGIIYAVYAITK 315
            STAT VDI++A++LPPLGVFL+FGC  EFW+CL+LT+LG+IPGIIYA+Y +TK
Sbjct:    2 STATFVDIIIAILLPPLGVFLRFGCGVEFWICLVLTLLGYIPGIIYAIYVLTK 54          
BLAST of DR406123 vs. ExPASy Swiss-Prot
Match: OSR8_ORYSJ (Hydrophobic protein OSR8 OS=Oryza sativa subsp. japonica GN=OSR8 PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.064e-14
Identity = 38/56 (67.86%), Postives = 46/56 (82.14%), Query Frame = 1
Query:  145 MADGSTATCVDILLAVILPPLGVFLKFGC-KAEFWVCLLLTILGHIPGIIYAVYAI 309
            MA G   T ++ILLA+ILPPLGVFL+FGC   EF +CLLLTILG++PGIIYAVY +
Sbjct:    1 MASGRCCTFLEILLAIILPPLGVFLRFGCCSMEFCICLLLTILGYVPGIIYAVYVL 56          
BLAST of DR406123 vs. ExPASy Swiss-Prot
Match: LT02_HORVU (Low temperature-induced protein lt101.2 OS=Hordeum vulgare GN=LT101.2 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.064e-14
Identity = 32/51 (62.75%), Postives = 46/51 (90.20%), Query Frame = 1
Query:  157 STATCVDILLAVILPPLGVFLKFGCKAEFWVCLLLTILGHIPGIIYAVYAI 309
            ++AT ++++LA+ILPP+GVFL++G   EFW+CLLLT+LG+IPGIIYAVY +
Sbjct:    2 ASATFIEVILAIILPPVGVFLRYGLAVEFWICLLLTLLGYIPGIIYAVYVL 52          
BLAST of DR406123 vs. ExPASy Swiss-Prot
Match: LT01_HORVU (Low temperature-induced protein lt101.1 OS=Hordeum vulgare GN=LT101.1 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.177e-13
Identity = 32/50 (64.00%), Postives = 44/50 (88.00%), Query Frame = 1
Query:  160 TATCVDILLAVILPPLGVFLKFGCKAEFWVCLLLTILGHIPGIIYAVYAI 309
            +AT ++++LA+ILPP+GVFL++    EFW+CLLLTILG+IPGIIYAVY +
Sbjct:    3 SATVLEVILAIILPPVGVFLRYKLGVEFWICLLLTILGYIPGIIYAVYVL 52          
BLAST of DR406123 vs. ExPASy Swiss-Prot
Match: ESI3_LOPEL (Salt stress-induced hydrophobic peptide ESI3 OS=Lophopyrum elongatum GN=ESI3 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.177e-13
Identity = 32/50 (64.00%), Postives = 44/50 (88.00%), Query Frame = 1
Query:  160 TATCVDILLAVILPPLGVFLKFGCKAEFWVCLLLTILGHIPGIIYAVYAI 309
            +AT ++++LA+ILPP+GVFL++    EFW+CLLLTILG+IPGIIYAVY +
Sbjct:    3 SATVLEVILAIILPPVGVFLRYKLGVEFWICLLLTILGYIPGIIYAVYVL 52          
BLAST of DR406123 vs. ExPASy Swiss-Prot
Match: PMP3_DEBHA (Plasma membrane proteolipid 3 OS=Debaryomyces hansenii GN=PMP3 PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.101e-11
Identity = 32/53 (60.38%), Postives = 43/53 (81.13%), Query Frame = 1
Query:  166 TCVDI---LLAVILPPLGVFLKFGCKAEFWVCLLLTILGHIPGIIYAVYAITK 315
            TC DI   ++A+ILPPLGVFL+ GC + FW+ ++LTILG+IPGII+A+Y I K
Sbjct:    4 TCSDIFKIIIAIILPPLGVFLERGCASSFWINIVLTILGYIPGIIHALYVILK 56          
The following BLAST results are available for this feature:
BLAST of DR406123 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
LTI6B_ORYSJ1.099e-1980.77Hydrophobic protein LTI6B OS=Oryza sativa subsp. j... [more]
LTI6B_ORYSI1.099e-1980.77Hydrophobic protein LTI6B OS=Oryza sativa subsp. i... [more]
LTI6A_ORYSJ4.175e-1975.44Hydrophobic protein LTI6A OS=Oryza sativa subsp. j... [more]
RCI2B_ARATH2.072e-1873.58Hydrophobic protein RCI2B OS=Arabidopsis thaliana ... [more]
RCI2A_ARATH3.535e-1871.70Hydrophobic protein RCI2A OS=Arabidopsis thaliana ... [more]
OSR8_ORYSJ1.064e-1467.86Hydrophobic protein OSR8 OS=Oryza sativa subsp. ja... [more]
LT02_HORVU1.064e-1462.75Low temperature-induced protein lt101.2 OS=Hordeum... [more]
LT01_HORVU1.177e-1364.00Low temperature-induced protein lt101.1 OS=Hordeum... [more]
ESI3_LOPEL1.177e-1364.00Salt stress-induced hydrophobic peptide ESI3 OS=Lo... [more]
PMP3_DEBHA1.101e-1160.38Plasma membrane proteolipid 3 OS=Debaryomyces hans... [more]

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Properties
Property NameValue
Genbank descriptionCSAJ-PNP1248M20 Mature Juice Sac from Navel Orange in pTriplEx2 vector Citrus sinensis cDNA clone CSAJ-PNP1248M20 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR406123 ID=DR406123; Name=DR406123; organism=Citrus sinensis; type=EST; length=640bp
CGGCGCGCGGGAAAACAAAAATACCAAGTNNNANNNNNNAAAGCAGTTAC
TCAAAACCTTAAACACTTCTTTAATCAAAGTTCTTGTTTTTTGACTCTAA
ATTTTATTTTATTCCATTTTACACTTTTTAAGAATCAATCAAAGATGGCA
GATGGAAGCACAGCAACATGCGTAGATATTCTCTTGGCTGTTATCTTGCC
TCCTCTTGGTGTCTTTCTCAAATTTGGTTGCAAGGCTGAGTTTTGGGTCT
GTTTGCTCTTGACAATTCTGGGGCATATCCCTGGAATTATTTATGCTGTT
TATGCCATCACCAAGAAGTGATCTCTCTTCTTCATCTATTGAGAGATCCC
AAGGGCATCATGTGTTTATGAGATCTTTTATTTACAACCGTTTGATGGAC
AGCTCTGATTTGATGTAGCCAGATGGGTTCTGATTCTTAATCAACTGGGG
TGTGCGTGTGTGTGGGAGAGAGCACTTGTTTCGTTTGTTAATCTTTGTCG
TTTTGTTTTCTTTAATTTGTCCTTTTTAATGAATTTTAATTCAATATGTT
GATGTAAAGTGGAGTATTATTGAGTGTGTAAATTGCCTTGTGAATCATTA
CAAGTCCCCGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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