DR406028

Overview
NameDR406028
Unique NameDR406028
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length625
Libraries
Library NameType
Mature Juice Sac from Navel Orange in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13137 contig Csv1_Contig13137:408..1031. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DR406028 vs. ExPASy Swiss-Prot
Match: VATL_PHAAU (V-type proton ATPase 16 kDa proteolipid subunit OS=Phaseolus aureus PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 4.107e-16
Identity = 48/78 (61.54%), Postives = 48/78 (61.54%), Query Frame = 1
Query:    4 YLFDGYXXXXXXXXXXXXXXXXXMAIGIVGDAGVRANAQQPKLFVGMXXXXXXXXXXXXYRLIVGIILSSRAGQSRAD 237
            YLFDGY                 MAIGIVGDAGVRANAQQPKLFVGM            Y LIVGIILSSRAGQSRAD
Sbjct:   87 YLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRAD 164          
BLAST of DR406028 vs. ExPASy Swiss-Prot
Match: VATL_ORYSJ (V-type proton ATPase 16 kDa proteolipid subunit OS=Oryza sativa subsp. japonica GN=VATP-P1 PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 4.107e-16
Identity = 48/78 (61.54%), Postives = 48/78 (61.54%), Query Frame = 1
Query:    4 YLFDGYXXXXXXXXXXXXXXXXXMAIGIVGDAGVRANAQQPKLFVGMXXXXXXXXXXXXYRLIVGIILSSRAGQSRAD 237
            YLFDGY                 MAIGIVGDAGVRANAQQPKLFVGM            Y LIVGIILSSRAGQSRAD
Sbjct:   88 YLFDGYAHLSSGLACGLAGLAAGMAIGIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRAD 165          
BLAST of DR406028 vs. ExPASy Swiss-Prot
Match: VATL_ORYSI (V-type proton ATPase 16 kDa proteolipid subunit OS=Oryza sativa subsp. indica GN=VATP-P1 PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 4.107e-16
Identity = 48/78 (61.54%), Postives = 48/78 (61.54%), Query Frame = 1
Query:    4 YLFDGYXXXXXXXXXXXXXXXXXMAIGIVGDAGVRANAQQPKLFVGMXXXXXXXXXXXXYRLIVGIILSSRAGQSRAD 237
            YLFDGY                 MAIGIVGDAGVRANAQQPKLFVGM            Y LIVGIILSSRAGQSRAD
Sbjct:   88 YLFDGYAHLSSGLACGLAGLAAGMAIGIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRAD 165          
BLAST of DR406028 vs. ExPASy Swiss-Prot
Match: VATL_MESCR (V-type proton ATPase 16 kDa proteolipid subunit OS=Mesembryanthemum crystallinum GN=VMAC1 PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 4.107e-16
Identity = 48/78 (61.54%), Postives = 48/78 (61.54%), Query Frame = 1
Query:    4 YLFDGYXXXXXXXXXXXXXXXXXMAIGIVGDAGVRANAQQPKLFVGMXXXXXXXXXXXXYRLIVGIILSSRAGQSRAD 237
            YLFDGY                 MAIGIVGDAGVRANAQQPKLFVGM            Y LIVGIILSSRAGQSRAD
Sbjct:   88 YLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRAD 165          
BLAST of DR406028 vs. ExPASy Swiss-Prot
Match: VATL_MAIZE (V-type proton ATPase 16 kDa proteolipid subunit (Fragment) OS=Zea mays PE=2 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 4.107e-16
Identity = 48/78 (61.54%), Postives = 48/78 (61.54%), Query Frame = 1
Query:    4 YLFDGYXXXXXXXXXXXXXXXXXMAIGIVGDAGVRANAQQPKLFVGMXXXXXXXXXXXXYRLIVGIILSSRAGQSRAD 237
            YLFDGY                 MAIGIVGDAGVRANAQQPKLFVGM            Y LIVGIILSSRAGQSRAD
Sbjct:   32 YLFDGYAHLSSGLACGLAGLAAGMAIGIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRAD 109          
BLAST of DR406028 vs. ExPASy Swiss-Prot
Match: VATL_KALDA (V-type proton ATPase 16 kDa proteolipid subunit OS=Kalanchoe daigremontiana PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 4.107e-16
Identity = 48/78 (61.54%), Postives = 48/78 (61.54%), Query Frame = 1
Query:    4 YLFDGYXXXXXXXXXXXXXXXXXMAIGIVGDAGVRANAQQPKLFVGMXXXXXXXXXXXXYRLIVGIILSSRAGQSRAD 237
            YLFDGY                 MAIGIVGDAGVRANAQQPKLFVGM            Y LIVGIILSSRAGQSRAD
Sbjct:   88 YLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRAD 165          
BLAST of DR406028 vs. ExPASy Swiss-Prot
Match: VATL_BETVU (V-type proton ATPase 16 kDa proteolipid subunit OS=Beta vulgaris GN=VMAC1 PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 4.107e-16
Identity = 48/78 (61.54%), Postives = 48/78 (61.54%), Query Frame = 1
Query:    4 YLFDGYXXXXXXXXXXXXXXXXXMAIGIVGDAGVRANAQQPKLFVGMXXXXXXXXXXXXYRLIVGIILSSRAGQSRAD 237
            YLFDGY                 MAIGIVGDAGVRANAQQPKLFVGM            Y LIVGIILSSRAGQSRAD
Sbjct:   88 YLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRAD 165          
BLAST of DR406028 vs. ExPASy Swiss-Prot
Match: VATL_TOBAC (V-type proton ATPase 16 kDa proteolipid subunit OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.195e-15
Identity = 47/78 (60.26%), Postives = 48/78 (61.54%), Query Frame = 1
Query:    4 YLFDGYXXXXXXXXXXXXXXXXXMAIGIVGDAGVRANAQQPKLFVGMXXXXXXXXXXXXYRLIVGIILSSRAGQSRAD 237
            YLFDGY                 MAIGIVGDAGVRANAQQPKLFVGM            Y LIVGIILSSRAGQSRA+
Sbjct:   88 YLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRAE 165          
BLAST of DR406028 vs. ExPASy Swiss-Prot
Match: VATL_SOLLC (V-type proton ATPase 16 kDa proteolipid subunit OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.195e-15
Identity = 47/78 (60.26%), Postives = 48/78 (61.54%), Query Frame = 1
Query:    4 YLFDGYXXXXXXXXXXXXXXXXXMAIGIVGDAGVRANAQQPKLFVGMXXXXXXXXXXXXYRLIVGIILSSRAGQSRAD 237
            YLFDGY                 MAIGIVGDAGVRANAQQPKLFVGM            Y LIVGIILSSRAGQSRA+
Sbjct:   87 YLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRAE 164          
BLAST of DR406028 vs. ExPASy Swiss-Prot
Match: VATL_GOSHI (V-type proton ATPase 16 kDa proteolipid subunit OS=Gossypium hirsutum GN=CVA16-2 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.195e-15
Identity = 47/78 (60.26%), Postives = 48/78 (61.54%), Query Frame = 1
Query:    4 YLFDGYXXXXXXXXXXXXXXXXXMAIGIVGDAGVRANAQQPKLFVGMXXXXXXXXXXXXYRLIVGIILSSRAGQSRAD 237
            YLFDGY                 MAIGIVGDAGVRANAQQPKLFVGM            Y LIVGIILSSRAGQSRA+
Sbjct:   88 YLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRAE 165          
The following BLAST results are available for this feature:
BLAST of DR406028 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
VATL_PHAAU4.107e-1661.54V-type proton ATPase 16 kDa proteolipid subunit OS... [more]
VATL_ORYSJ4.107e-1661.54V-type proton ATPase 16 kDa proteolipid subunit OS... [more]
VATL_ORYSI4.107e-1661.54V-type proton ATPase 16 kDa proteolipid subunit OS... [more]
VATL_MESCR4.107e-1661.54V-type proton ATPase 16 kDa proteolipid subunit OS... [more]
VATL_MAIZE4.107e-1661.54V-type proton ATPase 16 kDa proteolipid subunit (F... [more]
VATL_KALDA4.107e-1661.54V-type proton ATPase 16 kDa proteolipid subunit OS... [more]
VATL_BETVU4.107e-1661.54V-type proton ATPase 16 kDa proteolipid subunit OS... [more]
VATL_TOBAC1.195e-1560.26V-type proton ATPase 16 kDa proteolipid subunit OS... [more]
VATL_SOLLC1.195e-1560.26V-type proton ATPase 16 kDa proteolipid subunit OS... [more]
VATL_GOSHI1.195e-1560.26V-type proton ATPase 16 kDa proteolipid subunit OS... [more]

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Properties
Property NameValue
Genbank descriptionCSAJ-PNP1248I03 Mature Juice Sac from Navel Orange in pTriplEx2 vector Citrus sinensis cDNA clone CSAJ-PNP1248I03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR406028 ID=DR406028; Name=DR406028; organism=Citrus sinensis; type=EST; length=625bp
GGGTACCTTTTCGATGGCTACGCGCATCTCTCTTCTGGCCTCGCTTGTGG
CCTTGCTGGTCTCTCCGCTGGTATGGCAATTGGGATCGTCGGTGATGCTG
GTGTCAGAGCCAATGCTCAACAGCCGAAGCTTTTCGTTGGGATGATCCTC
ATTCTGATCTTTGCTGAAGCGCTGGCACTTTATAGACTTATTGTTGGTAT
CATTCTTTCTTCTCGTGCTGGTCAGTCAAGAGCAGACTAGAAGAGGATGC
TTTGCTTGGTGGTTATTTGGCCTGTTGTGTTCCATTAAGAAGAATTCAGT
TCATATTGCCTGTGACGGGAGGTGGTAGTCTGCGTTGGGTAGTGTTTTTC
TTTTTCGACTTAAATGTTATTGTCTGTGGTGTGATTGTTCAACCAGATTG
ATTCGATTTTTAATGGTGATGGAGAATGTAGAATTAGGAATTAGCTTCTC
CCATTAATAAAATCATGCTGTCATTGTTTAGTTTAATGTTAAAATGCTGT
ATTTTTTGGGATCCATTTATAGGTTGTTGATACCCTAATAATCGCTTGTA
ATGTTTTCTGAGACTCTCTCTACTTGATCTCCAGTTTTGTAAAGCCAAAA
AAAAAAAAAAAAAAAAAAAAAAAAA
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