DR405916

Overview
NameDR405916
Unique NameDR405916
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length725
Libraries
Library NameType
Mature Juice Sac from Navel Orange in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DR405916_ssr658 microsatellite DR405916_ssr658:658..669. BLAST: Citrus ESTs to Populus V2 proteins
Csv1_Contig2568 contig Csv1_Contig2568:137..862. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DR405916 vs. ExPASy Swiss-Prot
Match: LEA5_CITSI (Late embryogenesis abundant protein Lea5 OS=Citrus sinensis GN=LEA5 PE=2 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 4.814e-43
Identity = 74/74 (100.00%), Postives = 74/74 (100.00%), Query Frame = 2
Query:  152 MARSLFKAKLLLAPVADGISLSISRRGYAAAAPLGTISRTGIMEKNDLRPAVREDSGASSAWAPDPITGYYRPE 373
            MARSLFKAKLLLAPVADGISLSISRRGYAAAAPLGTISRTGIMEKNDLRPAVREDSGASSAWAPDPITGYYRPE
Sbjct:    1 MARSLFKAKLLLAPVADGISLSISRRGYAAAAPLGTISRTGIMEKNDLRPAVREDSGASSAWAPDPITGYYRPE 74          

HSP 2 Score: 47.7506 bits (112), Expect = 4.814e-43
Identity = 22/23 (95.65%), Postives = 23/23 (100.00%), Query Frame = 1
Query:  373 DRAVEIDPAELREMLLNHKVRAH 441
            +RAVEIDPAELREMLLNHKVRAH
Sbjct:   75 NRAVEIDPAELREMLLNHKVRAH 97          
BLAST of DR405916 vs. ExPASy Swiss-Prot
Match: LEA5D_GOSHI (Late embryogenesis abundant protein Lea5-D OS=Gossypium hirsutum GN=LEA5-D PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.324e-17
Identity = 42/82 (51.22%), Postives = 53/82 (64.63%), Query Frame = 2
Query:  152 MARSLFKAKLLLAPVADGISLSISRRGYAAAAPLG---TISRTGIMEKNDLRPAVREDSGA-----SSAWAPDPITGYYRPE 373
            MARS+   KLL A + DG+ +SISRRGY+ A P     +  R G M K + R A++E S +     SSAWAPDP+TGYYRPE
Sbjct:    1 MARSVSSFKLLGASIFDGLYVSISRRGYSGAPPAAVTASFGRPGAMGKVERRDAMKESSSSETRAYSSAWAPDPVTGYYRPE 82          

HSP 2 Score: 33.8834 bits (76), Expect = 2.324e-17
Identity = 15/18 (83.33%), Postives = 17/18 (94.44%), Query Frame = 1
Query:  385 EIDPAELREMLLNHKVRA 438
            EID AELREMLLNH+VR+
Sbjct:   87 EIDAAELREMLLNHRVRS 104          
BLAST of DR405916 vs. ExPASy Swiss-Prot
Match: LEA5A_GOSHI (Late embryogenesis abundant protein Lea5-A OS=Gossypium hirsutum GN=LEA5-A PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.552e-15
Identity = 41/82 (50.00%), Postives = 51/82 (62.20%), Query Frame = 2
Query:  152 MARSLFKAKLLLAPVADGISLSISRRGYAAAAPLG---TISRTGIMEKNDLRPAVREDSGA-----SSAWAPDPITGYYRPE 373
            MARS+   K L A V D + +SISRRGY+ A P     +  R G M K + R A++E S +     SSAWAPDP+TGYYRPE
Sbjct:    1 MARSVSSFKFLGASVFDALYVSISRRGYSGAPPAAVTASFGRPGAMGKVERRYAMKESSSSETRAYSSAWAPDPVTGYYRPE 82          

HSP 2 Score: 31.9574 bits (71), Expect = 1.552e-15
Identity = 13/18 (72.22%), Postives = 17/18 (94.44%), Query Frame = 1
Query:  385 EIDPAELREMLLNHKVRA 438
            EID A+LREM+LNH+VR+
Sbjct:   87 EIDAADLREMMLNHRVRS 104          
The following BLAST results are available for this feature:
BLAST of DR405916 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
LEA5_CITSI4.814e-43100.00Late embryogenesis abundant protein Lea5 OS=Citrus... [more]
LEA5D_GOSHI2.324e-1751.22Late embryogenesis abundant protein Lea5-D OS=Goss... [more]
LEA5A_GOSHI1.552e-1550.00Late embryogenesis abundant protein Lea5-A OS=Goss... [more]
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Properties
Property NameValue
Genbank descriptionCSAJ-PNP1248C21 Mature Juice Sac from Navel Orange in pTriplEx2 vector Citrus sinensis cDNA clone CSAJ-PNP1248C21 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR405916 ID=DR405916; Name=DR405916; organism=Citrus sinensis; type=EST; length=725bp
GGGGACAAGCACAGCACAAAGAGAGCGAGCCGCTAGCTTTTGCCTATAGC
TACTGCAGGAGCAGAATCTTTCTTCTTCTGTAGTAGCACTGTACAGAAAC
ATCCCAGCTAGCTATCTTCATATCTATTAAGTTCTATAAGTAAATAAAAC
AATGGCCCGCTCTCTCTTCAAAGCTAAGCTTCTTCTTGCTCCTGTTGCTG
ATGGCATCTCGCTCTCCATTAGCAGGAGAGGATATGCTGCAGCAGCACCC
TTGGGGACCATATCTCGGACTGGTATCATGGAGAAAAATGATTTGAGGCC
TGCGGTGAGAGAGGATTCTGGGGCCTCTTCTGCCTGGGCCCCAGATCCCA
TCACTGGGTACTACAGGCCGGAGATCGGGCGGTCGAGATTGATCCAGCAG
AGCTTCGAGAGATGCTGTTGAACCACAAAGTCAGGGCACACTAGGGAGTG
GTGGCGCATAGCAGCAGATCCTTTGCTGTTAGCGGTGCTTTAACTTTTTA
AGTGATGTTGTTACAGTAGCAATTTTGACTCACTCTTAAGTCTTTGCTGT
TGTATTGATATCAACTGTTATTGACAACTTTTAATAGTGCATTTCCATGA
TTTTGTCCATTAACTTGTCAATAAAAGTAAAGAATTCCTGTATTGCAAAA
TTACTTTTATATATATATANGAAGGGGTTATGCNGGTCTGGGATCCCAGA
CTGNNNNNNNNGTCTAANNNNAAAA
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