DR405898
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of DR405898 vs. ExPASy Swiss-Prot
Match: MED31_ARATH (Mediator of RNA polymerase II transcription subunit 31 OS=Arabidopsis thaliana GN=At5g19910 PE=2 SV=1) HSP 1 Score: 252.292 bits (643), Expect = 1.790e-66 Identity = 121/166 (72.89%), Postives = 127/166 (76.51%), Query Frame = 1 Query: 109 GEEASDAPSSPKKVYKDPDDGRQRFLLELEFVQCLANPTYIHYLAQNRYFEDEAFIGYLKYLQYWQRPEYIKFIMYPHCLYFLELLQNANFRNAMAHPANKELAHRQQFFFWKNYRNNRLKHILPRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSGPALSPMQY 606 G++AS+ PS PK YKDPD GRQRFLLELEF+QCLANPTYIHYLAQNRYFEDEAFIGYLKYLQYWQRPEYIKFIMYPHCLYFLELLQN NFR AMAHPANKELAHRQQF++WKNYRNNRLKHILPR PALSPMQY Sbjct: 8 GDDASEIPSPPKNTYKDPDGGRQRFLLELEFIQCLANPTYIHYLAQNRYFEDEAFIGYLKYLQYWQRPEYIKFIMYPHCLYFLELLQNPNFRTAMAHPANKELAHRQQFYYWKNYRNNRLKHILPRPLPEPVPPQPPVAPSTSLPPAPSATAAL---SPALSPMQY 170
BLAST of DR405898 vs. ExPASy Swiss-Prot
Match: MED31_DICDI (Putative mediator of RNA polymerase II transcription subunit 31 OS=Dictyostelium discoideum GN=med31 PE=3 SV=1) HSP 1 Score: 142.124 bits (357), Expect = 2.608e-33 Identity = 58/97 (59.79%), Postives = 77/97 (79.38%), Query Frame = 1 Query: 178 RFLLELEFVQCLANPTYIHYLAQNRYFEDEAFIGYLKYLQYWQRPEYIKFIMYPHCLYFLELLQNANFRNAMAHPANKELAHRQQFFFWKNYRNNRL 468 RF++ELEF+QCL+NP Y++YLAQNRYF+D+AF+ YL YLQYW++PEY KFI+YP LYFL+LLQ FR + H + + H QQF+ W+ YRNNR+ Sbjct: 55 RFIMELEFIQCLSNPRYLNYLAQNRYFQDKAFVNYLVYLQYWKKPEYAKFIVYPQSLYFLDLLQEERFRQELNHSQSTDFIHEQQFYHWQYYRNNRM 151
BLAST of DR405898 vs. ExPASy Swiss-Prot
Match: MED31_DANRE (Mediator of RNA polymerase II transcription subunit 31 OS=Danio rerio GN=med31 PE=2 SV=2) HSP 1 Score: 119.783 bits (299), Expect = 1.386e-26 Identity = 52/108 (48.15%), Postives = 70/108 (64.81%), Query Frame = 1 Query: 148 VYKDPDDGRQRFLLELEFVQCLANPTYIHYLAQNRYFEDEAFIGYLKYLQYWQRPEYIKFIMYPHCLYFLELLQNANFRNAMAHPANKELAHRQQFFFWKNYRNNRLK 471 V + + RQRF LELEFVQCLANP Y+++LAQ Y ++ F+ YLKYL YW+ PEY KF+ YPHCL+ LELLQ +FR + + + QQ W++Y R + Sbjct: 4 VMETDEQARQRFQLELEFVQCLANPNYLNFLAQRGYLREKPFVNYLKYLLYWKEPEYAKFLKYPHCLHMLELLQYEHFRKELVNAQCAKFIDEQQILHWQHYSRKRTR 111
BLAST of DR405898 vs. ExPASy Swiss-Prot
Match: MED31_BOVIN (Mediator of RNA polymerase II transcription subunit 31 OS=Bos taurus GN=MED31 PE=2 SV=1) HSP 1 Score: 119.398 bits (298), Expect = 1.811e-26 Identity = 52/105 (49.52%), Postives = 70/105 (66.67%), Query Frame = 1 Query: 157 DPDDGRQRFLLELEFVQCLANPTYIHYLAQNRYFEDEAFIGYLKYLQYWQRPEYIKFIMYPHCLYFLELLQNANFRNAMAHPANKELAHRQQFFFWKNYRNNRLK 471 D R RF LELEFVQCLANP Y+++LAQ YF+D+AF+ YLKYL YW+ PEY K++ YP CL+ LELLQ +FR + + + QQ W++Y R++ Sbjct: 10 DDAGNRLRFQLELEFVQCLANPNYLNFLAQRGYFKDKAFVNYLKYLLYWKEPEYAKYLKYPQCLHMLELLQYEHFRKELVNAQCAKFIDEQQILHWQHYSRKRMR 114
BLAST of DR405898 vs. ExPASy Swiss-Prot
Match: MED31_MOUSE (Mediator of RNA polymerase II transcription subunit 31 OS=Mus musculus GN=Med31 PE=1 SV=2) HSP 1 Score: 119.013 bits (297), Expect = 2.365e-26 Identity = 52/105 (49.52%), Postives = 70/105 (66.67%), Query Frame = 1 Query: 157 DPDDGRQRFLLELEFVQCLANPTYIHYLAQNRYFEDEAFIGYLKYLQYWQRPEYIKFIMYPHCLYFLELLQNANFRNAMAHPANKELAHRQQFFFWKNYRNNRLK 471 D R RF LELEFVQCLANP Y+++LAQ YF+D+AF+ YLKYL YW+ PEY K++ YP CL+ LELLQ +FR + + + QQ W++Y R++ Sbjct: 10 DDAGNRLRFQLELEFVQCLANPNYLNFLAQRGYFKDKAFVNYLKYLLYWKEPEYAKYLKYPQCLHMLELLQYEHFRKELVNAQCAKFIDEQQILHWQHYSRKRVR 114
BLAST of DR405898 vs. ExPASy Swiss-Prot
Match: MED31_HUMAN (Mediator of RNA polymerase II transcription subunit 31 OS=Homo sapiens GN=MED31 PE=1 SV=1) HSP 1 Score: 118.627 bits (296), Expect = 3.088e-26 Identity = 52/105 (49.52%), Postives = 70/105 (66.67%), Query Frame = 1 Query: 157 DPDDGRQRFLLELEFVQCLANPTYIHYLAQNRYFEDEAFIGYLKYLQYWQRPEYIKFIMYPHCLYFLELLQNANFRNAMAHPANKELAHRQQFFFWKNYRNNRLK 471 D R RF LELEFVQCLANP Y+++LAQ YF+D+AF+ YLKYL YW+ PEY K++ YP CL+ LELLQ +FR + + + QQ W++Y R++ Sbjct: 10 DDAGNRLRFQLELEFVQCLANPNYLNFLAQRGYFKDKAFVNYLKYLLYWKDPEYAKYLKYPQCLHMLELLQYEHFRKELVNAQCAKFIDEQQILHWQHYSRKRMR 114
BLAST of DR405898 vs. ExPASy Swiss-Prot
Match: MED31_XENTR (Mediator of RNA polymerase II transcription subunit 31 OS=Xenopus tropicalis GN=med31 PE=2 SV=2) HSP 1 Score: 116.316 bits (290), Expect = 1.533e-25 Identity = 50/100 (50.00%), Postives = 69/100 (69.00%), Query Frame = 1 Query: 172 RQRFLLELEFVQCLANPTYIHYLAQNRYFEDEAFIGYLKYLQYWQRPEYIKFIMYPHCLYFLELLQNANFRNAMAHPANKELAHRQQFFFWKNYRNNRLK 471 R RF LELEFVQCLANP Y+++LAQ YF+D++F+ YLKYL YW+ PEY K++ YP CL+ LELLQ +FR + + + QQ W++Y R++ Sbjct: 12 RIRFQLELEFVQCLANPNYLNFLAQRGYFKDKSFVNYLKYLLYWKDPEYAKYLKYPQCLHMLELLQYEHFRKELVNAQCAKFIDEQQILHWQHYSRKRMR 111
BLAST of DR405898 vs. ExPASy Swiss-Prot
Match: MD31B_XENLA (Mediator of RNA polymerase II transcription subunit 31-B OS=Xenopus laevis GN=med31-B PE=2 SV=2) HSP 1 Score: 116.316 bits (290), Expect = 1.533e-25 Identity = 50/100 (50.00%), Postives = 69/100 (69.00%), Query Frame = 1 Query: 172 RQRFLLELEFVQCLANPTYIHYLAQNRYFEDEAFIGYLKYLQYWQRPEYIKFIMYPHCLYFLELLQNANFRNAMAHPANKELAHRQQFFFWKNYRNNRLK 471 R RF LELEFVQCLANP Y+++LAQ YF+D++F+ YLKYL YW+ PEY K++ YP CL+ LELLQ +FR + + + QQ W++Y R++ Sbjct: 13 RIRFQLELEFVQCLANPNYLNFLAQRGYFKDKSFVNYLKYLLYWKDPEYAKYLKYPQCLHMLELLQYEHFRKELVNAQCAKFIDEQQILHWQHYSRKRMR 112
BLAST of DR405898 vs. ExPASy Swiss-Prot
Match: MED31_DROME (Mediator of RNA polymerase II transcription subunit 31 OS=Drosophila melanogaster GN=MED31 PE=1 SV=2) HSP 1 Score: 115.546 bits (288), Expect = 2.614e-25 Identity = 49/102 (48.04%), Postives = 73/102 (71.57%), Query Frame = 1 Query: 172 RQRFLLELEFVQCLANPTYIHYLAQNRYFEDEAFIGYLKYLQYWQRPEYIKFIMYPHCLYFLELLQNANFRNAMAHPANKELAHRQQFFFWKNYRNNRLKHI 477 ++R+ +ELEFVQCL+NP Y+++LAQ +F+D++FI YLKYLQYW+ P+Y K++MYP CLYFL+LLQ +FR + + + Q W++Y R+K I Sbjct: 19 KRRWQIELEFVQCLSNPNYLNFLAQRGFFKDQSFINYLKYLQYWKEPDYAKYLMYPMCLYFLDLLQYEHFRREIVNSQCCKFIDDQAILQWQHYTRKRIKLI 120
BLAST of DR405898 vs. ExPASy Swiss-Prot
Match: MD31A_XENLA (Mediator of RNA polymerase II transcription subunit 31-A OS=Xenopus laevis GN=med31-A PE=2 SV=2) HSP 1 Score: 115.161 bits (287), Expect = 3.414e-25 Identity = 49/100 (49.00%), Postives = 68/100 (68.00%), Query Frame = 1 Query: 172 RQRFLLELEFVQCLANPTYIHYLAQNRYFEDEAFIGYLKYLQYWQRPEYIKFIMYPHCLYFLELLQNANFRNAMAHPANKELAHRQQFFFWKNYRNNRLK 471 R RF LELEFVQCLANP Y+++LAQ YF+D+ F+ Y+KYL YW+ PEY K++ YP CL+ LELLQ +FR + + + QQ W++Y R++ Sbjct: 12 RIRFQLELEFVQCLANPNYLNFLAQRGYFKDKPFVNYMKYLLYWKEPEYAKYLKYPQCLHMLELLQYEHFRKELVNAQCAKFIDEQQILHWQHYSRKRVR 111 The following BLAST results are available for this feature:
BLAST of DR405898 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 26
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Sequences
The
following sequences are available for this feature:
EST sequence >DR405898 ID=DR405898; Name=DR405898; organism=Citrus sinensis; type=EST; length=688bpback to top |