DR405897

Overview
NameDR405897
Unique NameDR405897
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length729
Libraries
Library NameType
Mature Juice Sac from Navel Orange in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR405897 vs. ExPASy Swiss-Prot
Match: RPG1_ARATH (Protein RUPTURED POLLEN GRAIN 1 OS=Arabidopsis thaliana GN=RPG1 PE=2 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 6.184e-28
Identity = 66/187 (35.29%), Postives = 111/187 (59.36%), Query Frame = 3
Query:  180 MFDHHQWGVAFGILGNIISFLVYLAPVPTFYRIYRKKSTESFQSLPYLVALFSSMMWFYYAL--VKQNAFLLVTINCFGCVIETIYIILFITY-APKGSRNSTVKLFVSMNVGVFSLILLLTHFLATGS-TRILILGWICVAFSVSVFAAPLSIVAQVIRTKSVEFMPFNLSFFLTLSAIMWFAYGL 728
            M D  Q     G++GN+ISF ++ AP  TF+RI++KKS E F  +PY+  + + M+W +Y L  V +++ L+ TIN  G VIE  Y+ +++ Y   K +    +  F+++ V +   I+L+T F   G   +   +G IC  F+++++ AP   + +V++TKSVE+MPF LS    ++A +W  Y L
Sbjct:    1 MVDAKQVRFIIGVIGNVISFGLFAAPAKTFWRIFKKKSVEEFSYVPYVATVMNCMLWVFYGLPVVHKDSILVSTINGVGLVIELFYVGVYLMYCGHKKNHRRNILGFLALEVILVVAIILITLFALKGDFVKQTFVGVICDVFNIAMYGAPSLAIIKVVKTKSVEYMPFLLSLVCFVNAGIWTTYSL 187          
BLAST of DR405897 vs. ExPASy Swiss-Prot
Match: R1AP1_XENLA (RAG1-activating protein 1 homolog OS=Xenopus laevis GN=rag1ap1 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.282e-14
Identity = 45/153 (29.41%), Postives = 88/153 (57.52%), Query Frame = 3
Query:  285 KKSTESFQSLPYLVALFSSMMWFYYALVKQNAFLLVTINCFGCVIETIYIILFITYAPKGSRNSTVKLFVSMNVGVFSLILLL-----THFLATGSTRILILGWICVAFSVSVFAAPLSIVAQVIRTKSVEFMPFNLSFFLTLSAIMWFAYGL 728
            ++S E+ Q LP+L    +++ WFYY  +K +  L++ +N  G  ++++Y+  ++ Y+P+       + +V   V V   +LLL     T ++   ++R+  LG  C  F++S++ +PL+ +AQ+IR+KS + + F L+    L++  W  YGL
Sbjct:   32 QRSVENIQYLPFLTTDLNNLGWFYYGYLKGDGTLMI-VNVIGASLQSLYMGAYLLYSPE-------RRYVGSQVLVSLGVLLLGYCYFTLWILDLNSRLNQLGLFCSVFTISMYLSPLADLAQIIRSKSTKCLSFPLTVATFLTSSSWVLYGL 176          
BLAST of DR405897 vs. ExPASy Swiss-Prot
Match: R1AP1_XENTR (RAG1-activating protein 1 homolog OS=Xenopus tropicalis GN=rag1ap1 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.980e-14
Identity = 44/147 (29.93%), Postives = 85/147 (57.82%), Query Frame = 3
Query:  285 KKSTESFQSLPYLVALFSSMMWFYYALVKQNAFLLVTINCFGCVIETIYIILFITYAPKGSRNSTVKLFVSMNVGVFSLILLLTHFLATGSTRILILGWICVAFSVSVFAAPLSIVAQVIRTKSVEFMPFNLSFFLTLSAIMWFAYG 725
            K+S E+ Q LP+L    +++ WFYY  +K +  L++ +N  G  ++T+Y+  +I Y+ +  R    ++ VS+ V +F      T +    ++R+  LG  C  F++S++ +PL+ +AQ+I++KS + + F L+    L++  W  YG
Sbjct:   32 KRSVENIQFLPFLTTDLNNLGWFYYGYLKGDGTLII-VNLIGASLQTLYMAAYILYSLE-RRYVVSQVLVSLGV-LFLAHCYFTLWTPDINSRLNQLGLFCSIFTISMYLSPLADLAQIIKSKSTKCLSFPLTVATFLTSTSWVLYG 175          
BLAST of DR405897 vs. ExPASy Swiss-Prot
Match: R1AP1_MOUSE (RAG1-activating protein 1 OS=Mus musculus GN=Rag1ap1 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.132e-13
Identity = 42/150 (28.00%), Postives = 83/150 (55.33%), Query Frame = 3
Query:  282 RKKSTESFQSLPYLVALFSSMMWFYYALVKQNAFLLVTINCFGCVIETIYIILFITYAPK--GSRNSTVKLFVSMNVGVFSLILLLTHFLATGSTRILILGWICVAFSVSVFAAPLSIVAQVIRTKSVEFMPFNLSFFLTLSAIMWFAYG 725
            R +S ++ Q LP+L    +++ W  Y ++K +  L++ +N  G V++T+YI+ ++ Y+P+  G    T  L   + +G     LL+    A    R+  LG  C  F++S++ +PL+ +A++++TKS + + F+L+      +  W  YG
Sbjct:   35 RTRSVDNIQFLPFLTTDVNNLSWLSYGVLKGDGTLII-VNSVGAVLQTLYILAYLHYSPQKHGVLLQTATLLAVLLLGYGYFWLLVPDLEA----RLQQLGLFCSVFTISMYLSPLADLAKIVQTKSTQRLSFSLTIATLFCSASWSIYG 179          
BLAST of DR405897 vs. ExPASy Swiss-Prot
Match: R1AP1_PAPAN (RAG1-activating protein 1 OS=Papio anubis GN=RAG1AP1 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.931e-13
Identity = 44/149 (29.53%), Postives = 83/149 (55.70%), Query Frame = 3
Query:  288 KSTESFQSLPYLVALFSSMMWFYYALVKQNAFLLVTINCFGCVIETIYIILFITYAPKGSRNSTVKLFVSMNVGVFSLILLLTHF---LATGSTRILILGWICVAFSVSVFAAPLSIVAQVIRTKSVEFMPFNLSFFLTLSAIMWFAYG 725
            +S ++ Q LP+L    +++ W  Y  +K +  L+V +N  G  ++T+YI+ ++ Y P   R   V L  +  +GV  L+L   +F   +     R+ +LG  C  F++S++ +PL+ +A+VI+TKS + + + L+    L++  W  YG
Sbjct:   37 RSVDNVQFLPFLTTEVNNLGWLSYGALKGDRILIV-VNTVGAALQTLYILAYLHYCP---RKRVVLLQTATLLGV--LLLGYGYFWLLVPNPEARLQLLGLFCSVFTISMYLSPLADLAKVIQTKSTQCLSYPLTIATVLTSASWCLYG 179          
BLAST of DR405897 vs. ExPASy Swiss-Prot
Match: R1AP1_DANRE (RAG1-activating protein 1 homolog OS=Danio rerio GN=rag1ap1 PE=2 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 2.523e-13
Identity = 43/151 (28.48%), Postives = 81/151 (53.64%), Query Frame = 3
Query:  288 KSTESFQSLPYLVALFSSMMWFYYALVKQNAFLLVTINCFGCVIETIYIILFITYAPKGSRNSTVKLFVSMNVGV----FSLILLLTHFLATGSTRILILGWICVAFSVSVFAAPLSIVAQVIRTKSVEFMPFNLSFFLTLSAIMWFAYGL 728
            +S ++ Q LP+L    +++ W YY L+K +   ++ +N  G  ++T+YI  +  Y  +  R  T  L +   + V    FSL++      + G  ++  LG  C  F++S++ +PL+ +  ++RTKSVE + F+L+     ++  W  YGL
Sbjct:   33 QSADNVQFLPFLTTCLNNLGWLYYGLLKGDG-TVIFVNIIGAFLQTVYIATYCHYTKEKRRVYTQTLLMVSVLCVAWVYFSLVI------SPGEAQLSQLGLTCSVFTISMYLSPLADLLDIMRTKSVERLSFSLTVATFFTSTSWTLYGL 176          
BLAST of DR405897 vs. ExPASy Swiss-Prot
Match: R1AP1_HUMAN (RAG1-activating protein 1 OS=Homo sapiens GN=RAG1AP1 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 7.339e-13
Identity = 44/149 (29.53%), Postives = 82/149 (55.03%), Query Frame = 3
Query:  288 KSTESFQSLPYLVALFSSMMWFYYALVKQNAFLLVTINCFGCVIETIYIILFITYAPKGSRNSTVKLFVSMNVGVFSLILLLTHF---LATGSTRILILGWICVAFSVSVFAAPLSIVAQVIRTKSVEFMPFNLSFFLTLSAIMWFAYG 725
            +S ++ Q LP+L    +++ W  Y  +K +  L+V +N  G  ++T+YI+ ++ Y P   R   V L  +  +GV  L+L   +F   +     R+  LG  C  F++S++ +PL+ +A+VI+TKS + + + L+    L++  W  YG
Sbjct:   37 RSVDNVQFLPFLTTEVNNLGWLSYGALKGDGILIV-VNTVGAALQTLYILAYLHYCP---RKRVVLLQTATLLGV--LLLGYGYFWLLVPNPEARLQQLGLFCSVFTISMYLSPLADLAKVIQTKSTQCLSYPLTIATLLTSASWCLYG 179          
The following BLAST results are available for this feature:
BLAST of DR405897 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
RPG1_ARATH6.184e-2835.29Protein RUPTURED POLLEN GRAIN 1 OS=Arabidopsis tha... [more]
R1AP1_XENLA2.282e-1429.41RAG1-activating protein 1 homolog OS=Xenopus laevi... [more]
R1AP1_XENTR2.980e-1429.93RAG1-activating protein 1 homolog OS=Xenopus tropi... [more]
R1AP1_MOUSE1.132e-1328.00RAG1-activating protein 1 OS=Mus musculus GN=Rag1a... [more]
R1AP1_PAPAN1.931e-1329.53RAG1-activating protein 1 OS=Papio anubis GN=RAG1A... [more]
R1AP1_DANRE2.523e-1328.48RAG1-activating protein 1 homolog OS=Danio rerio G... [more]
R1AP1_HUMAN7.339e-1329.53RAG1-activating protein 1 OS=Homo sapiens GN=RAG1A... [more]
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Properties
Property NameValue
Genbank descriptionCSAJ-PNP1248B19 Mature Juice Sac from Navel Orange in pTriplEx2 vector Citrus sinensis cDNA clone CSAJ-PNP1248B19 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR405897 ID=DR405897; Name=DR405897; organism=Citrus sinensis; type=EST; length=729bp
GGGGATCCTCGAGTTGCTTGCTTTGCATGTGTGATTGAGGGTGCTTGGCC
TCTTTTAAGAAATTGAGCTAGGGTTTCATAGTATCTTCTTTGAGATCGAG
GCCCTTGCTTGATCTTCTGATCAAATTTCGTTGTTGAGTGTTCAAAATTC
ATTTTTTGTTTACTAAGAAAATGGCCATAATGTTCGATCACCATCAATGG
GGAGTTGCATTTGGCATCTTAGGTAACATTATCTCGTTCCTCGTGTACCT
GGCTCCGGTGCCAACATTTTACCGAATTTACAGAAAAAAATCAACAGAGA
GCTTCCAGTCTCTGCCTTATCTGGTAGCATTGTTCAGCTCAATGATGTGG
TTCTACTATGCGCTTGTGAAACAAAATGCTTTCCTTCTCGTTACCATCAA
CTGCTTTGGATGTGTCATTGAGACTATTTACATCATCCTCTTCATCACTT
ATGCCCCAAAAGGCAGCCGGAACTCAACTGTCAAACTATTTGTTTCGATG
AACGTTGGAGTGTTCTCTTTGATTCTTCTTCTCACACACTTTCTTGCAAC
CGGTTCAACTCGGATCCTAATTCTTGGTTGGATTTGTGTTGCCTTTTCTG
TTAGTGTCTTCGCAGCACCCTTAAGCATTGTTGCACAAGTTATCCGAACA
AAAAGTGTTGAGTTCATGCCATTTAACCTATCATTTTTTCTTACGCTGAG
TGCAATTATGTGGTTCGCTTACGGTCTTT
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