CX069373

Overview
NameCX069373
Unique NameCX069373
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length859
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5646 contig Csv1_Contig5646:301..1159. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX069373 vs. ExPASy Swiss-Prot
Match: VP321_ARATH (Vacuolar protein sorting-associated protein 32 homolog 1 OS=Arabidopsis thaliana GN=VPS32.1 PE=2 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 1.735e-46
Identity = 93/99 (93.94%), Postives = 96/99 (96.97%), Query Frame = -3
Query:  561 YSKAKNKRAAIQCLKRKRLYEQQIEQLGNFQLRIHDQMIMLEGAKATTETVDALRTGASTMKAMQKATNIDDVDKTMDEINEQTENMKQIQEALSTPIG 857
            +S+AKNKRAAIQCLKRKRLYEQQ+EQLGNFQLRIHDQMIMLEGAKATTETVDALRTGAS MKAMQKATNIDDVDKTMDEINEQTENMKQIQEALS P G
Sbjct:   51 FSRAKNKRAAIQCLKRKRLYEQQVEQLGNFQLRIHDQMIMLEGAKATTETVDALRTGASAMKAMQKATNIDDVDKTMDEINEQTENMKQIQEALSAPFG 149          
BLAST of CX069373 vs. ExPASy Swiss-Prot
Match: VP322_ARATH (Vacuolar protein sorting-associated protein 32 homolog 2 OS=Arabidopsis thaliana GN=VPS32.2 PE=2 SV=1)

HSP 1 Score: 184.882 bits (468), Expect = 5.048e-46
Identity = 92/99 (92.93%), Postives = 97/99 (97.98%), Query Frame = -3
Query:  561 YSKAKNKRAAIQCLKRKRLYEQQIEQLGNFQLRIHDQMIMLEGAKATTETVDALRTGASTMKAMQKATNIDDVDKTMDEINEQTENMKQIQEALSTPIG 857
            YS+AKNKRAAIQCLKRKRLYE Q+EQLGNFQLRIHDQMIMLEGAKATTETVDALR+GAS MKAMQKATNIDDVDKTMDEINEQTENMKQIQEAL+TP+G
Sbjct:   50 YSRAKNKRAAIQCLKRKRLYEGQVEQLGNFQLRIHDQMIMLEGAKATTETVDALRSGASAMKAMQKATNIDDVDKTMDEINEQTENMKQIQEALATPMG 148          
BLAST of CX069373 vs. ExPASy Swiss-Prot
Match: SNF7_KLULA (Vacuolar-sorting protein SNF7 OS=Kluyveromyces lactis GN=SNF7 PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 4.313e-13
Identity = 39/93 (41.94%), Postives = 58/93 (62.37%), Query Frame = -3
Query:  564 NKRAAIQCLKRKRLYEQQIEQLGNFQLRIHDQMIMLEGAKATTETVDALRTGASTMKAMQKATNIDDVDKTMDEINEQTENMKQIQEALSTPI 842
            NK  A   LK+K+LYE Q+++L +    +  Q+  +E A    ET+ A++ GAS MK + K  ++D VD TMDEI EQ E  ++I EA+S P+
Sbjct:   56 NKNNAKTYLKKKKLYESQLDKLQSQIDSLDQQLYSIENANLNLETLKAMKQGASAMKNIHKGLDLDKVDDTMDEIREQVELNQEISEAISKPL 148          
BLAST of CX069373 vs. ExPASy Swiss-Prot
Match: CHM4B_DANRE (Charged multivesicular body protein 4b OS=Danio rerio GN=chmp4b PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.639e-12
Identity = 40/95 (42.11%), Postives = 55/95 (57.89%), Query Frame = -3
Query:  561 KNKRAAIQCLKRKRLYEQQIEQLGNFQLRIHDQMIMLEGAKATTETVDALRTGASTMKAMQKATNIDDVDKTMDEINEQTENMKQIQEALSTPIG 845
            KNKRAA+Q LKRK+ YE+Q+ Q+      I  Q   LE A   TE +  +   A  MKA     +ID VD+ M +I EQ E  ++I +A+S P+G
Sbjct:   58 KNKRAALQALKRKKRYEKQLAQIDGTLSTIEFQREALENAHTNTEVIKNMGYAAKAMKAAHDNMDIDKVDELMQDIIEQQELAQEISDAISKPVG 152          
BLAST of CX069373 vs. ExPASy Swiss-Prot
Match: SNF7_SCHPO (Vacuolar-sorting protein snf7 OS=Schizosaccharomyces pombe GN=snf7 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.796e-12
Identity = 33/94 (35.11%), Postives = 58/94 (61.70%), Query Frame = -3
Query:  561 NKRAAIQCLKRKRLYEQQIEQLGNFQLRIHDQMIMLEGAKATTETVDALRTGASTMKAMQKATNIDDVDKTMDEINEQTENMKQIQEALSTPIG 842
            NKR A+  LKRK+++E ++ ++   +  I  Q+  ++ A    ET+ A+R GA  MK++Q+  + D VD+ MD+I +Q    ++I   +STP+G
Sbjct:   56 NKRLALTALKRKKMHENELVKIEGSRNNIEQQLFSIQNANLNFETLQAMRQGAEAMKSIQRGMDADKVDQIMDKIRDQQTISEEISTMISTPVG 149          
BLAST of CX069373 vs. ExPASy Swiss-Prot
Match: CHM4C_DANRE (Charged multivesicular body protein 4c OS=Danio rerio GN=chmp4c PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.796e-12
Identity = 39/95 (41.05%), Postives = 54/95 (56.84%), Query Frame = -3
Query:  561 KNKRAAIQCLKRKRLYEQQIEQLGNFQLRIHDQMIMLEGAKATTETVDALRTGASTMKAMQKATNIDDVDKTMDEINEQTENMKQIQEALSTPIG 845
            KNKRAA+Q LKRK+ YE+Q+ Q+      I  Q   LE A   TE +  +   A  MK   +  +ID VD  M +I EQ E  ++I +A+S P+G
Sbjct:   58 KNKRAALQALKRKKRYEKQLAQIDGTLSTIEFQREALENANTNTEVLKNMGFAAKAMKTAHENMDIDKVDDLMQDITEQQELAQEISDAISRPVG 152          
BLAST of CX069373 vs. ExPASy Swiss-Prot
Match: SNF7_CANAL (Vacuolar-sorting protein SNF7 OS=Candida albicans GN=SNF7 PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.651e-12
Identity = 38/99 (38.38%), Postives = 56/99 (56.57%), Query Frame = -3
Query:  561 YSKAKNKRAAIQCLKRKRLYEQQIEQLGNFQLRIHDQMIMLEGAKATTETVDALRTGASTMKAMQKATNIDDVDKTMDEINEQTENMKQIQEALSTPIG 857
            Y  +K    A   LKRK+ YE  + ++ N    +  Q+I +EGA    ET+ A++ GA  MK +    ++D V+ TMDEI EQ E   +I EA+S P+G
Sbjct:   52 YVSSKQTTLAKSALKRKKGYESNLLKVENQIETLETQLISIEGANLNLETMKAMKQGAKAMKQIHGEYDVDKVEDTMDEIREQVELADEISEAISRPVG 150          
BLAST of CX069373 vs. ExPASy Swiss-Prot
Match: SNF7_CANGA (Vacuolar-sorting protein SNF7 OS=Candida glabrata GN=SNF7 PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 4.769e-12
Identity = 36/93 (38.71%), Postives = 57/93 (61.29%), Query Frame = -3
Query:  564 NKRAAIQCLKRKRLYEQQIEQLGNFQLRIHDQMIMLEGAKATTETVDALRTGASTMKAMQKATNIDDVDKTMDEINEQTENMKQIQEALSTPI 842
            NK  A   LK+K++YE Q+ +L +    +  Q+  +E A    ET+ A++ GA  MK++    +ID VD+TMDEI EQ E  ++I +A+S P+
Sbjct:   57 NKTMAKNALKKKKVYEGQLVKLESQMDSLEQQLFSIESANLNLETMRAMKQGAKAMKSIHSGLDIDRVDETMDEIREQVELGEEISDAISRPL 149          
BLAST of CX069373 vs. ExPASy Swiss-Prot
Match: CHM4B_CHICK (Charged multivesicular body protein 4b OS=Gallus gallus GN=CHMP4B PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 6.228e-12
Identity = 40/95 (42.11%), Postives = 53/95 (55.79%), Query Frame = -3
Query:  561 KNKRAAIQCLKRKRLYEQQIEQLGNFQLRIHDQMIMLEGAKATTETVDALRTGASTMKAMQKATNIDDVDKTMDEINEQTENMKQIQEALSTPIG 845
            KNKRAA+Q LKRK+ YE+Q+ Q+      I  Q   LE A   TE +  +   A  MKA     +ID VD+ M +I EQ E   +I  A+S P+G
Sbjct:   62 KNKRAALQALKRKKRYEKQLAQIDGTLSTIEFQREALENANTNTEVLKNMGFAAKAMKAAHDNMDIDKVDELMQDIAEQQELADEISTAISKPVG 156          
BLAST of CX069373 vs. ExPASy Swiss-Prot
Match: CHM4B_MOUSE (Charged multivesicular body protein 4b OS=Mus musculus GN=Chmp4b PE=2 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 8.134e-12
Identity = 39/95 (41.05%), Postives = 54/95 (56.84%), Query Frame = -3
Query:  561 KNKRAAIQCLKRKRLYEQQIEQLGNFQLRIHDQMIMLEGAKATTETVDALRTGASTMKAMQKATNIDDVDKTMDEINEQTENMKQIQEALSTPIG 845
            KNKRAA+Q LKRK+ YE+Q+ Q+      I  Q   LE A   TE +  +   A  MKA     +ID VD+ M +I +Q E  ++I  A+S P+G
Sbjct:   60 KNKRAALQALKRKKRYEKQLAQIDGTLSTIEFQREALENANTNTEVLKNMGYAAKAMKAAHDNMDIDKVDELMQDIADQQELAEEISTAISKPVG 154          
The following BLAST results are available for this feature:
BLAST of CX069373 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
VP321_ARATH1.735e-4693.94Vacuolar protein sorting-associated protein 32 hom... [more]
VP322_ARATH5.048e-4692.93Vacuolar protein sorting-associated protein 32 hom... [more]
SNF7_KLULA4.313e-1341.94Vacuolar-sorting protein SNF7 OS=Kluyveromyces lac... [more]
CHM4B_DANRE1.639e-1242.11Charged multivesicular body protein 4b OS=Danio re... [more]
SNF7_SCHPO2.796e-1235.11Vacuolar-sorting protein snf7 OS=Schizosaccharomyc... [more]
CHM4C_DANRE2.796e-1241.05Charged multivesicular body protein 4c OS=Danio re... [more]
SNF7_CANAL3.651e-1238.38Vacuolar-sorting protein SNF7 OS=Candida albicans ... [more]
SNF7_CANGA4.769e-1238.71Vacuolar-sorting protein SNF7 OS=Candida glabrata ... [more]
CHM4B_CHICK6.228e-1242.11Charged multivesicular body protein 4b OS=Gallus g... [more]
CHM4B_MOUSE8.134e-1241.05Charged multivesicular body protein 4b OS=Mus musc... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_10A10_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-10A10-A20-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069373 ID=CX069373; Name=CX069373; organism=Citrus sinensis; type=EST; length=859bp
TTTTTTTTCACAATTTGTTCATTTATTAGTATGCCTAAAGAGTTTCACAC
CATAACCTGGCAGTACTTCTTCATGAGATGTGAAGTTGCTACCAAGAGCT
CAACGAACATAAAATTTTCACAGGAGAAGGAAAAAACACATCAAAGATGA
TGAACTCAATTAAAAGGTCTATAAGACAGAATACAGGATACATATTTCAA
ACAGGACTAGTTTACGCAAACTTTATATACAGTCTGTTCATTGAATGCAC
ACAGAAATCTTGAAGGTAATCCAAGTAGGCATAAATCTCCACATTATACG
GCCAGCTATTTAAATAATATCTTCATTATGGCGGTAAAACCTGCTTAAAG
AGCCATCTCAGCTTGTAAAGCAGCAAGCTCATCTTCCTCAGCTGTTCGCT
GCTTTTGGGGAACAGGACGGGCTTGTTGCCTGCCAGCAGGGACCTGAACC
GGAGCAGCAGGAGCTGTTGTAGCTGGCTGTAGAAGCTGCTCTTCCAACTC
AGCACCTTCCAGTTCTTCAAGTTCTGCTTCCAATTCATCCTCATCGAAAT
CAGCAGCAGCACCAATAGGAGTTGATAATGCTTCTTGAATCTGCTTCATG
TTCTCGGTCTGCTCATTGATCTCATCCATGGTCTTATCCACATCATCTAT
GTTCGTTGCTTTCTGCATAGCCTTCATTGTCGATGCTCCCGTCCTCAATG
CATCTACAGTCTCAGTTGTGGCTTTAGCACCTTCTAGCATTATCATCTGA
TCATGAATGCGCAATTGGAAATTCCCAAGCTGCTCTATTTGCTGTTCGTA
TAGCCTCTTCCTCTTCAAACATTGTATGGCCGCTCTTTTGTTCTTTGCTT
TGGAGTAGT
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