CX069362

Overview
NameCX069362
Unique NameCX069362
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length868
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX069362 vs. ExPASy Swiss-Prot
Match: TMVRN_NICGU (TMV resistance protein N OS=Nicotiana glutinosa GN=N PE=1 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 5.017e-33
Identity = 86/221 (38.91%), Postives = 124/221 (56.11%), Query Frame = -1
Query:  149 LKKFPQIVTTMKDLSELNLDGTSITEVPSSIXXXXXXXXXXXN-DCKNLARVPSSINGLKSPKTLNLSGCCKLENVPDTLGQVESLEELDISETAVRRPPSSIFLMKNLRTLSLFGCNGPPSWHLHLPFNLMGKSSCLVALMLPSLSGLRSLTKLDLSDCGLGEGAIPSDIGNLHSLNELYLSKNNFVTLPASINSLLNLKELEMEDCKRLQSLPQLPPNI 808
            L+K P+I   MK   ++++ G+ I E+PSSI             + KNL  +PSSI  LKS  +L++SGC KLE++P+ +G +++L   D S+T + RPPSSI  +  L  L   G       H   P               P   GL SL  L+LS C L +G +P +IG+L SL +L LS+NNF  LP+SI  L  L+ L+++DC+RL  LP+LPP +
Sbjct:  701 LEKLPEIYGRMKPEIQIHMQGSGIRELPSSIFQYKTHVTKLLLWNMKNLVALPSSICRLKSLVSLSVSGCSKLESLPEEIGDLDNLRVFDASDTLILRPPSSIIRLNKLIILMFRGFKD--GVHFEFP---------------PVAEGLHSLEYLNLSYCNLIDGGLPEEIGSLSSLKKLDLSRNNFEHLPSSIAQLGALQSLDLKDCQRLTQLPELPPEL 904          
BLAST of CX069362 vs. ExPASy Swiss-Prot
Match: DRL25_ARATH (Putative disease resistance protein At4g19050 OS=Arabidopsis thaliana GN=At4g19050 PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 2.262e-17
Identity = 64/222 (28.83%), Postives = 107/222 (48.20%), Query Frame = -1
Query:  116 KDLSELNLDGTSITEVPSSIXXXXXXXXXXXNDCKNLARVPSSINGLKSPKTLNLSGCCKLENVPDTLGQVESLEELDISETAVRRPPSSIFLMKNLRTLSLFGCNGPPSWHLHLPFNLMGKSSCLVALMLPSLSGLRSLTKLDLSDCGLGEGAIPSDIGNLHSLNELYLSKNNFVTLPASINSLLNLKELEMEDCKRLQSLPQLP--PNIIFVKVNGCSSL 775
            K+L  L++  TS+ E+  +I            +C  +  +PS I  L   +  ++SGC KL+N+  + G++  L E+++SET +   P  I  + NL+ L +                      C     LP+L  L +L   D+S C   E  I     NL  L+++ LS+ N   LP  I+ L NLKEL + +C +L++LP L    +++   V+GC++L
Sbjct:  679 KELRILDMSKTSLPELADTIADVVNLNKLLLRNCSLIEELPS-IEKLTHLEVFDVSGCIKLKNINGSFGEMSYLHEVNLSETNLSELPDKISELSNLKELII--------------------RKCSKLKTLPNLEKLTNLEIFDVSGCTELE-TIEGSFENLSCLHKVNLSETNLGELPNKISELSNLKELILRNCSKLKALPNLEKLTHLVIFDVSGCTNL 878          
BLAST of CX069362 vs. ExPASy Swiss-Prot
Match: ROCO5_DICDI (Probable serine/threonine-protein kinase roco5 OS=Dictyostelium discoideum GN=roco5 PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.678e-12
Identity = 67/228 (29.39%), Postives = 105/228 (46.05%), Query Frame = -1
Query:  134 MKDLSELNLDGTSITEVPSSIXXXXXXXXXXXNDCKNLARVPSSINGLKSPKTLNLSGCCKLENVPDTLGQVESLEELDISETAVRR-PPSSIFLMKNLRTLSLFGCNGPPSWHLHLPFNLMGKSSCLVALML---PSLSGLRS---------LTKLDLSDCGLGEGAIPSDIGNLHSLNELYLSKNNFVTLPASINSLLNLKELEMEDCKRLQSLPQLPPNIIFVKV 778
            + DL EL LD   I+ +P SI                L+ +PS I+ +K  K LN+S    L ++P  LG +  L  LDIS   +     +S+  + NL+ L +       ++   LP  +  +   L +  +   P    ++           TKLDLSDCGL   A+P +IG++ SL EL L+ N    LP  I  L +L+ L + +   ++SLP     +  +KV
Sbjct:  984 ISDLKELYLDHNCISSIPVSILKELKNLQILDLSNNQLSSLPSEISEMKELKLLNVSHN-NLSSLPIELGTLCKLNHLDISFNFIETINVNSLSQLVNLKVLMM-----QRNYFNRLPIEIFTRLKSLESFSIAGSPCFHPIKQRIYEAIAIKATKLDLSDCGLS--ALPIEIGSISSLIELDLTNNRIKDLPPQIGKLSSLQTLNLSN-NAIESLPWQLSQLTTLKV 1202          
BLAST of CX069362 vs. ExPASy Swiss-Prot
Match: WRK19_ARATH (Probable WRKY transcription factor 19 OS=Arabidopsis thaliana GN=WRKY19 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.420e-11
Identity = 43/112 (38.39%), Postives = 62/112 (55.36%), Query Frame = -1
Query:  476 QLKKFPQIVTTMKDLSELNLDGTSITEVPSSIXXXXXXXXXXXNDCKNLARVPSSINGLKSPKTLNLSGCCKLENVPDTLGQVESLEELDISETAVRRPPSSIFLMKNLRTL 811
            +L  FP+I   +K   EL + GT I E+PSSI            + ++L  +P+SI  LK  +TLNLSGC  LE  PD+  +++ L  LD+S T ++  PSSI  +  L  L
Sbjct: 1340 KLGNFPEISPNVK---ELYMGGTMIQEIPSSIKNLVLLEKLDLENSRHLKNLPTSIYKLKHLETLNLSGCISLERFPDSSRRMKCLRFLDLSRTDIKELPSSISYLTALDEL 1448          
BLAST of CX069362 vs. ExPASy Swiss-Prot
Match: POPC_RALSO (Protein popC OS=Ralstonia solanacearum GN=popC PE=4 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 5.397e-11
Identity = 59/209 (28.23%), Postives = 101/209 (48.33%), Query Frame = -1
Query:  155 MKDLSELNLDGTSITEVPSSIXXXXXXXXXXXNDCKNLARVPSSINGLKSPKTLNLSGCCKLENVPDTLGQVESLEELDISETAVRRPPSSIFLMKNLRTLSLFGCNGPPSWHLHLPFNLMGKSSCLVALMLPSLSGLRSLTKLDLSDCGLGEGAIPSDIGNLHSLNELYLSKN-NFVTLPASINSLLNLKELEMEDCKRLQSLPQLPP 778
            M  L +L +D +S+ ++P+             ++ K L  +P+SI  L + KTL+L    KL ++P + GQ+  L+EL ++   +   P S+    +L+TL++                        +A +      LR+L  L LS+  L E  +P++ GNLH+L  L L  N    TLP+S+  L  L+EL +++     S+ +LPP
Sbjct:  381 MSSLQKLTVDNSSLAKLPADFGALGNLAHVSLSNTK-LRDLPASIGNLFTLKTLSLQDNPKLGSLPASFGQLSGLQELTLNGNRIHELP-SMGGASSLQTLTV--------------------DDTALAGLPADFGALRNLAHLSLSNTQLRE--LPANTGNLHALKTLSLQGNQQLATLPSSLGYLSGLEELTLKN----SSVSELPP 561          
BLAST of CX069362 vs. ExPASy Swiss-Prot
Match: RPK1_IPONI (Receptor-like protein kinase OS=Ipomoea nil GN=INRPK1 PE=2 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 9.206e-11
Identity = 55/167 (32.93%), Postives = 87/167 (52.10%), Query Frame = -1
Query:  167 INGLKSPKTLNLSGCCKLENVPDTLGQVESLEELDISETAVR-RPPSSIFLMKNLRTLSLF--GCNGP-PSWHLHLPF--NLMGKSSCLVALMLPSLSGLRSLTKLDLSDCGLGEGAIPSDIGNLHSLNELYLSKNNFV-TLPASINSLLNLKELEMEDCKRLQSLP 646
            I+ LK  K + LSG     ++P  LG    LE +D+S  +     P ++  ++NLR LSLF     GP P   L +P    +    + L   +  ++  +  LT L L D     G +PS +GN+ +L ELYL+ NN V TLP ++N+L NL  L++ +   + ++P
Sbjct:   88 ISHLKHLKKVVLSGNGFFGSIPSQLGNCSLLEHIDLSSNSFTGNIPDTLGALQNLRNLSLFFNSLIGPFPESLLSIPHLETVYFTGNGLNGSIPSNIGNMSELTTLWLDDNQFS-GPVPSSLGNITTLQELYLNDNNLVGTLPVTLNNLENLVYLDVRNNSLVGAIP 253          
The following BLAST results are available for this feature:
BLAST of CX069362 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
TMVRN_NICGU5.017e-3338.91TMV resistance protein N OS=Nicotiana glutinosa GN... [more]
DRL25_ARATH2.262e-1728.83Putative disease resistance protein At4g19050 OS=A... [more]
ROCO5_DICDI1.678e-1229.39Probable serine/threonine-protein kinase roco5 OS=... [more]
WRK19_ARATH1.420e-1138.39Probable WRKY transcription factor 19 OS=Arabidops... [more]
POPC_RALSO5.397e-1128.23Protein popC OS=Ralstonia solanacearum GN=popC PE=... [more]
RPK1_IPONI9.206e-1132.93Receptor-like protein kinase OS=Ipomoea nil GN=INR... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS08_10A03_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-10A03-A6-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069362 ID=CX069362; Name=CX069362; organism=Citrus sinensis; type=EST; length=868bp
ACTCTCGCAGCATTAAAATTGCCCAACCGTTGTTTCCGAGCAATTTCAAG
CTGTCTATGCTTTCAATAACTATGCCGTTGGACTTGCATAGTTTTAATGC
ACCTAATAATGTCACCAACGAAGAACAACCATTCACTTTAACAAAAATTA
TGTTGGGTGGAAGTTGTGGCAGAGATTGAAGCCTTTTACAATCTTCCATC
TCTAGTTCTTTAAGATTTAAAAGACTATTAATACTTGCTGGCAGCGTAAC
AAAATTGTTTTTACTCAGATACAACTCATTTAATGAGTGTAAGTTGCCAA
TATCACTCGGGATTGCTCCTTCCCCTAGACCACAGTCACTGAGATCTAAT
TTTGTTAAAGAGCGCAAACCTGACAGAGAAGGCAACATCAAAGCTACAAG
ACATGAACTCTTTCCCATCAAATTGAAGGGAAGGTGCAAATGCCATGATG
GTGGTCCATTGCACCCAAAAAGAGAGAGTGTTCTAAGATTCTTCATAAGA
AAAATGGAGGATGGAGGTCGTCTTACAGCTGTTTCGCTTATATCAAGTTC
TTCCAAACTTTCTACTTGCCCAAGCGTGTCCGGCACATTTTCAAGTTTGC
AGCAGCCTGAGAGATTCAAAGTTTTGGGGGATTTTAAACCATTTATACTG
CTGGGAACTCTCGCGAGATTTTTGCAATCATTCAAATTCAACAATTCAAG
TCCAGGCAAAAGTTCAATAGATGATGGCACTTCTGTAATGGAAGTTCCAT
CTAGATTGAGCTCTGACAGATCTTTCATAGTTGTCACAATCTGTGGAAAC
TTCTTCAGTTGAAGACGCATAGTTTATCGAGAGAACAATAACTGAAATTC
TTGATTCTTCAATTGCTT
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