DR403414

Overview
NameDR403414
Unique NameDR403414
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length589
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR403414 vs. ExPASy Swiss-Prot
Match: RH18_ARATH (DEAD-box ATP-dependent RNA helicase 18 OS=Arabidopsis thaliana GN=RH18 PE=2 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 1.804e-31
Identity = 69/90 (76.67%), Postives = 79/90 (87.78%), Query Frame = -1
Query:   44 SNPNRALTETRFSDLKPALSEPVLEALAEAGFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVEILRRASS-ARKPHQVQNI 310
            +N N+ALTETRFSDL+P LS  ++EAL ++ FEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVEILRR++S   KPHQV  +
Sbjct:    5 ANINKALTETRFSDLEPPLSGDIIEALNQSDFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVEILRRSTSFPPKPHQVMGV 94          
BLAST of DR403414 vs. ExPASy Swiss-Prot
Match: RH18_ORYSJ (DEAD-box ATP-dependent RNA helicase 18 OS=Oryza sativa subsp. japonica GN=Os01g0164500 PE=1 SV=2)

HSP 1 Score: 117.857 bits (294), Expect = 3.892e-26
Identity = 62/85 (72.94%), Postives = 68/85 (80.00%), Query Frame = -1
Query:   44 RALTETRFSDLKPALSEPVLEALAEAGFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVEILRRASSARKPHQVQNI 298
            RALTE RFS+L PALS  V++AL   GF  CTPVQAA IPLL S+KDVAVDAATGSGKTLAFVVP+VEILRR  S  KPH+V  I
Sbjct:   16 RALTEQRFSELSPALSPEVVKALKGGGFRRCTPVQAAAIPLLLSHKDVAVDAATGSGKTLAFVVPVVEILRRRPSPPKPHEVLGI 100          
BLAST of DR403414 vs. ExPASy Swiss-Prot
Match: RH49_ARATH (DEAD-box ATP-dependent RNA helicase 49 OS=Arabidopsis thaliana GN=RH49 PE=2 SV=2)

HSP 1 Score: 117.472 bits (293), Expect = 5.084e-26
Identity = 58/94 (61.70%), Postives = 75/94 (79.79%), Query Frame = -1
Query:   44 MESNPNRALTET--RFSDLKPALSEPVLEALAEAGFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVEILRRASS-ARKPHQVQNI 316
            M+S+P + +T+   RFS+LKP LSE ++EAL  +GFE CTPVQA TIP LCS+KDV VDAATGSGKTLAF++P +EI+RR++S   KPHQV  +
Sbjct:    1 MDSSPPKTITKALPRFSELKPPLSEDIIEALDRSGFEVCTPVQAETIPFLCSHKDVVVDAATGSGKTLAFLLPFIEIIRRSNSYPPKPHQVMGV 94          
BLAST of DR403414 vs. ExPASy Swiss-Prot
Match: RH55_ARATH (DEAD-box ATP-dependent RNA helicase 55 OS=Arabidopsis thaliana GN=RH55 PE=2 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 2.523e-25
Identity = 58/95 (61.05%), Postives = 73/95 (76.84%), Query Frame = -1
Query:   44 MESNPNRALTET---RFSDLKPALSEPVLEALAEAGFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVEILRRASS-ARKPHQVQNI 316
            M+S+P   + E    RFS+LKP LSE ++EAL  +GFE CTPVQA TIP LCS+KDV VDAATGSGKTLAF++P +EI+RR++S   KPHQV  +
Sbjct:    1 MDSSPPNTIIEEAPPRFSELKPPLSEDIIEALDRSGFEVCTPVQAETIPFLCSHKDVVVDAATGSGKTLAFLLPFIEIIRRSNSYPPKPHQVMGV 95          
BLAST of DR403414 vs. ExPASy Swiss-Prot
Match: DDX55_CHICK (ATP-dependent RNA helicase DDX55 OS=Gallus gallus GN=DDX55 PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 2.796e-16
Identity = 47/81 (58.02%), Postives = 56/81 (69.14%), Query Frame = -1
Query:   53 ALTETRFSDLKPALSEPVLEALAEAGFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVEILRRASSARKPHQV 295
            A+TE  +S L  ALS  VL AL + GF+  TPVQ+ATIPL  S KDVA +A TGSGKTLAFV+P++EIL R     K  QV
Sbjct:    3 AVTEGGWSSLPVALSPGVLRALQDLGFDRMTPVQSATIPLFMSNKDVAAEAVTGSGKTLAFVIPILEILLRREEKLKKMQV 83          
BLAST of DR403414 vs. ExPASy Swiss-Prot
Match: SPB4_ASPCL (ATP-dependent rRNA helicase spb4 OS=Aspergillus clavatus GN=spb4 PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 5.273e-15
Identity = 41/88 (46.59%), Postives = 56/88 (63.64%), Query Frame = -1
Query:   53 MESNPNRALTETRFSDLKPALSEPVLEALAEAGFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVEILRRASSARKPHQV 316
            M  NP +  +   +  + P LSE VLEA++  GF   TPVQA+ IPL  ++KDV V+A TGSGKTL+F++P+VE L R     K H +
Sbjct:    1 MAPNPPKGTSSRAWDAVTPPLSEWVLEAMSSMGFARMTPVQASAIPLFMAHKDVVVEAVTGSGKTLSFLLPIVEKLLRLEEPIKKHHI 88          
BLAST of DR403414 vs. ExPASy Swiss-Prot
Match: SPB4_AJECN (ATP-dependent rRNA helicase SPB4 OS=Ajellomyces capsulata (strain NAm1 / WU24) GN=SPB4 PE=3 SV=2)

HSP 1 Score: 80.4925 bits (197), Expect = 6.887e-15
Identity = 40/72 (55.56%), Postives = 52/72 (72.22%), Query Frame = -1
Query:   53 LKPALSEPVLEALAEAGFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVEILRRASSARKPHQV 268
            L P LSE +L+A++  GF   TPVQA+TIPL  ++KDV V+A TGSGKTLAF++P+VE L R  S  K H +
Sbjct:   24 LTPPLSEWILDAISAMGFSRMTPVQASTIPLFMAHKDVVVEAVTGSGKTLAFLIPVVERLLRLESPIKKHHI 95          
BLAST of DR403414 vs. ExPASy Swiss-Prot
Match: SPB4_NEOFI (ATP-dependent rRNA helicase spb4 OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=spb4 PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.175e-14
Identity = 41/88 (46.59%), Postives = 55/88 (62.50%), Query Frame = -1
Query:   53 MESNPNRALTETRFSDLKPALSEPVLEALAEAGFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVEILRRASSARKPHQV 316
            M   P    +   +  + PALSE VLEA++  GF   TPVQA+ IPL  ++KDV V+A TGSGKTL+F++P+VE L R     K H +
Sbjct:    1 MAPKPPSGTSSRAWDAVTPALSEWVLEAMSSMGFTRMTPVQASAIPLFMAHKDVVVEAVTGSGKTLSFLIPVVEKLLRLEEPIKKHHI 88          
BLAST of DR403414 vs. ExPASy Swiss-Prot
Match: SPB4_ASPOR (ATP-dependent rRNA helicase spb4 OS=Aspergillus oryzae GN=spb4 PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.175e-14
Identity = 41/88 (46.59%), Postives = 55/88 (62.50%), Query Frame = -1
Query:   53 MESNPNRALTETRFSDLKPALSEPVLEALAEAGFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVEILRRASSARKPHQV 316
            M   P    +   +  + P+LSE VLEA++  GF   TPVQA+ IPL  ++KDV V+A TGSGKTL+F++P+VE L R     K H V
Sbjct:    1 MAPKPPAGTSSRAWDGVSPSLSEWVLEAVSSMGFTRMTPVQASAIPLFMAHKDVVVEAVTGSGKTLSFLIPIVEKLLRLEEPIKKHHV 88          
BLAST of DR403414 vs. ExPASy Swiss-Prot
Match: SPB4_ASPNC (ATP-dependent rRNA helicase spb4 OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=spb4 PE=3 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 1.175e-14
Identity = 42/88 (47.73%), Postives = 55/88 (62.50%), Query Frame = -1
Query:   53 MESNPNRALTETRFSDLKPALSEPVLEALAEAGFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVEILRRASSARKPHQV 316
            M   P    +   +  + PALSE VL+A+A  GF   TPVQA+ IPL  ++KDV V+A TGSGKTL+F++P+VE L R     K H V
Sbjct:    1 MAPKPPPGTSARAWDGVTPALSEWVLDAVASMGFTRMTPVQASAIPLFMAHKDVVVEAVTGSGKTLSFLIPVVEKLLRLEEPLKKHHV 88          
The following BLAST results are available for this feature:
BLAST of DR403414 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 30
Match NameE-valueIdentityDescription
RH18_ARATH1.804e-3176.67DEAD-box ATP-dependent RNA helicase 18 OS=Arabidop... [more]
RH18_ORYSJ3.892e-2672.94DEAD-box ATP-dependent RNA helicase 18 OS=Oryza sa... [more]
RH49_ARATH5.084e-2661.70DEAD-box ATP-dependent RNA helicase 49 OS=Arabidop... [more]
RH55_ARATH2.523e-2561.05DEAD-box ATP-dependent RNA helicase 55 OS=Arabidop... [more]
DDX55_CHICK2.796e-1658.02ATP-dependent RNA helicase DDX55 OS=Gallus gallus ... [more]
SPB4_ASPCL5.273e-1546.59ATP-dependent rRNA helicase spb4 OS=Aspergillus cl... [more]
SPB4_AJECN6.887e-1555.56ATP-dependent rRNA helicase SPB4 OS=Ajellomyces ca... [more]
SPB4_NEOFI1.175e-1446.59ATP-dependent rRNA helicase spb4 OS=Neosartorya fi... [more]
SPB4_ASPOR1.175e-1446.59ATP-dependent rRNA helicase spb4 OS=Aspergillus or... [more]
SPB4_ASPNC1.175e-1447.73ATP-dependent rRNA helicase spb4 OS=Aspergillus ni... [more]

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Properties
Property NameValue
Genbank descriptionCSAF-PNP1244P06 Flavedo Mature Citrus sinensis cDNA clone CSAF-PNP1244P06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR403414 ID=DR403414; Name=DR403414; organism=Citrus sinensis; type=EST; length=589bp
GGGATTTTCCTGAAGCTTCTAGGCAGCCAAACACAAATGAGAAAATGTTT
TGGACCTGGTGGGGTTTCCGAGCAGAAGAGGCACGGCGGAGGATCTCCAC
TAGAGGGACGACAAAAGCTAGGGTTTTGCCAGAGCCGGTGGCGGCGTCCA
CGGCTACGTCCTTGTAGCTGCATAACAAAGGGATTGTGGCAGCTTGAACA
GGCGTGCAAAACTCAAAGCCGGCTTCAGCTAAGGCTTCGAGAACTGGCTC
GGAAAGCGCCGGCTTCAAATCGGAAAAGCGAGTTTCTGTTAACGCTCTGT
TCGGGTTGGACTCCATTCTAACGGTTCAAGGCAAGCGCGGATTCGGAGTC
AGATAGCATCCATTGATACCTACTGAAAACATATCAAATCAGTCCCTTAA
TTTTATATTTATTTCTCGATGAAAAACAAAGGCTTCGGTAGACAGTGGAG
TTGTTCTACTGTAGAGAACTGACGGTGATCCTTACGTTATAGTAATAAGT
GTAGATTTAATATTTATTTTTATGATCGTACGGTTATCAACAATATTTTG
CCATTGAGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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