DR403408
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of DR403408 vs. ExPASy Swiss-Prot
Match: VP282_ARATH (Vacuolar protein sorting-associated protein 28 homolog 2 OS=Arabidopsis thaliana GN=VPS28-2 PE=1 SV=2) HSP 1 Score: 242.276 bits (617), Expect = 1.932e-63 Identity = 122/163 (74.85%), Postives = 132/163 (80.98%), Query Frame = 1 Query: 4 ETECQKLIAHFKTLSSTLKDIVPSIERFADTYKMDCPAALNRLVTSGVPATVEHKXXXXXXXXXXXXXXXECVQNFITAMDSLKLNMVAVDQVHPXXXXXXXXXXXXTILPPDFEGKTKMKDWISRLSKMGAADELTEQQSRQLHFDLESSYNSFMAALPNAG 492 E+ECQKLI HFKTLS+TLKD VP+IERFADTYKMDCPAAL RLVTSG+PATVEH+ ECVQNFIT+MDSLKLNMVAVDQV+P +ILPPDFEGKTKMK+W+SRLSKMGAADELTEQQSRQLHFDLESSYNSFMAALP AG Sbjct: 47 ESECQKLIVHFKTLSATLKDTVPNIERFADTYKMDCPAALYRLVTSGLPATVEHRATVAASTSNSASIVAECVQNFITSMDSLKLNMVAVDQVYPLLSDLSASLNKLSILPPDFEGKTKMKEWLSRLSKMGAADELTEQQSRQLHFDLESSYNSFMAALPKAG 209
BLAST of DR403408 vs. ExPASy Swiss-Prot
Match: VP281_ARATH (Vacuolar protein sorting-associated protein 28 homolog 1 OS=Arabidopsis thaliana GN=VPS28-1 PE=1 SV=1) HSP 1 Score: 233.802 bits (595), Expect = 6.871e-61 Identity = 117/163 (71.78%), Postives = 131/163 (80.37%), Query Frame = 1 Query: 4 ETECQKLIAHFKTLSSTLKDIVPSIERFADTYKMDCPAALNRLVTSGVPATVEHKXXXXXXXXXXXXXXXECVQNFITAMDSLKLNMVAVDQVHPXXXXXXXXXXXXTILPPDFEGKTKMKDWISRLSKMGAADELTEQQSRQLHFDLESSYNSFMAALPNAG 492 ETECQKLI HFKTLS++LKD+VP+IERFA+TYKMDC AA+ RLVTSGVPATVEH+ ECVQNFIT+MDSLKLNMVAVDQV+P +ILPPDFEGK KMK+W+ RLSKMGA+DELTEQQ+RQLHFDLESSYNSFMAALPNAG Sbjct: 46 ETECQKLIVHFKTLSASLKDMVPNIERFAETYKMDCSAAVYRLVTSGVPATVEHRAAASASTSSSASVVAECVQNFITSMDSLKLNMVAVDQVYPLLSDLSASLNKLSILPPDFEGKIKMKEWLLRLSKMGASDELTEQQARQLHFDLESSYNSFMAALPNAG 208
BLAST of DR403408 vs. ExPASy Swiss-Prot
Match: VPS28_DICDI (Vacuolar protein sorting-associated protein 28 OS=Dictyostelium discoideum GN=vps28 PE=3 SV=1) HSP 1 Score: 130.183 bits (326), Expect = 1.070e-29 Identity = 69/158 (43.67%), Postives = 93/158 (58.86%), Query Frame = 1 Query: 7 TECQKLIAHFKTLSSTLKDIVPSIERFADTYKMDCPAALNRLVTSGVPATVEHKXXXXXXXXXXXXXXXECVQNFITAMDSLKLNMVAVDQVHPXXXXXXXXXXXXTILPPDFEGKTKMKDWISRLSKMGAADELTEQQSRQLHFDLESSYNSFMAAL 480 T C KLIA FK+ + LKD V ++ +F Y ++C AA +RLV G P+T+EH E VQ FIT MDS++L +V+VD ++P L P FEGK K+K+WIS L++M A DEL + QSRQL FDL++SYN F A+ Sbjct: 129 TACSKLIAQFKSSQTLLKDQVSNVGQFMKDYDLNCKAAFDRLVIKGFPSTLEHNTNESSTDSAMAKNVAEAVQLFITTMDSIRLKLVSVDGIYPLLSDLMESLNKNQWLGPTFEGKEKIKNWISILNQMKATDELDDDQSRQLLFDLDNSYNIFYKAI 286
BLAST of DR403408 vs. ExPASy Swiss-Prot
Match: VPS28_YEAST (Vacuolar protein sorting-associated protein 28 OS=Saccharomyces cerevisiae GN=VPS28 PE=1 SV=1) HSP 1 Score: 90.8929 bits (224), Expect = 7.193e-18 Identity = 65/172 (37.79%), Postives = 82/172 (47.67%), Query Frame = 1 Query: 19 KLIAHFKT-LSSTLKDIV----PSIERFADTYKMDCPAALNRLVTSGVPATVEH-------------KXXXXXXXXXXXXXXXECVQNFITAMDSLKLNMVAVDQVHPXXXXXXXXXXXXTILPPDFEGKTKMKDWISRLSKMGAADELTEQQSRQLHFDLESSYNSFMAAL 480 KL+ FK L+S K+ + SIE F DTY + A+ RL G+P T EH K E NFIT MD+LKLN A DQ+HP T DFE ++K+ DWI R++K+ D LTE Q R+L FDLE +Y SF A L Sbjct: 73 KLLKQFKVYLNSQNKEEINKHFQSIEAFCDTYNITASNAITRL-ERGIPITAEHAISTTTSAPSGDNKQSSSSDKKFNAKYVAEATGNFITVMDALKLNYNAKDQLHPLLAELLISINRVT--RDDFENRSKLIDWIVRINKLSIGDTLTETQIRELLFDLELAYKSFYALL 241
BLAST of DR403408 vs. ExPASy Swiss-Prot
Match: VPS28_CAEEL (Vacuolar protein sorting-associated protein 28 homolog OS=Caenorhabditis elegans GN=Y87G2A.10 PE=2 SV=1) HSP 1 Score: 90.8929 bits (224), Expect = 7.193e-18 Identity = 57/159 (35.85%), Postives = 86/159 (54.09%), Query Frame = 1 Query: 4 ETECQKLIAHFKTLSSTLKDIVPSIERFADTYKMDCPAALNRLVTSGVPATVEHKXXXXXXXXXXXXXXXECVQNFITAMDSLKLNMVAVDQVHPXXXXXXXXXXXXTILPPDFEGKTKMKDWISRLSKMGAADELTEQQSRQLHFDLESSYNSFMAAL 480 ++EC KLI +K ++ L SIE FA Y++ CPAA+ R + G P TV+ V+ FIT +D+L+LN AVD ++P + +P D TK+K W RLS M A+DE++++ +RQ+ FD+ES+Y +F AL Sbjct: 55 KSECFKLIDQYK-VTMRLVHGATSIEDFAKKYRLHCPAAIER-IREGRPITVKDDQGNVLKHIA------SIVEQFITFLDALRLNTRAVDDLYPGLDDLYNAINTTSRVPIDAIVTTKVKKWHDRLSSMAASDEISDEDARQMIFDVESAYQAFNKAL 205
BLAST of DR403408 vs. ExPASy Swiss-Prot
Match: VPS28_RAT (Vacuolar protein sorting-associated protein 28 homolog OS=Rattus norvegicus GN=Vps28 PE=2 SV=1) HSP 1 Score: 90.5077 bits (223), Expect = 9.395e-18 Identity = 50/153 (32.68%), Postives = 79/153 (51.63%), Query Frame = 1 Query: 13 CQKLIAHFKTLSSTLKDI-VPSIERFADTYKMDCPAALNRLVTSGVPATVEHKXXXXXXXXXXXXXXXECVQNFITAMDSLKLNMVAVDQVHPXXXXXXXXXXXXTILPPDFEGKTKMKDWISRLSKMGAADELTEQQSRQLHFDLESSYNSF 468 C +L+ +K ++ + SI+ F +++DCP A+ R + P T++ + V FIT MD L+L + A+D++ P + LPPDFEG+ + W+ LS M A+DEL + Q RQ+ FDLES+YN+F Sbjct: 77 CSRLLVQYKAAFRQVQGSEISSIDEFCRKFRLDCPLAMER-IKEDRPITIKDDKGNLNRCIA------DVVSLFITVMDKLRLEIRAMDEIQPDLRELMETMHRMSHLPPDFEGRQTVSQWLQTLSGMSASDELDDSQVRQMLFDLESAYNAF 222
BLAST of DR403408 vs. ExPASy Swiss-Prot
Match: VPS28_MOUSE (Vacuolar protein sorting-associated protein 28 homolog OS=Mus musculus GN=Vps28 PE=2 SV=1) HSP 1 Score: 90.5077 bits (223), Expect = 9.395e-18 Identity = 50/153 (32.68%), Postives = 79/153 (51.63%), Query Frame = 1 Query: 13 CQKLIAHFKTLSSTLKDI-VPSIERFADTYKMDCPAALNRLVTSGVPATVEHKXXXXXXXXXXXXXXXECVQNFITAMDSLKLNMVAVDQVHPXXXXXXXXXXXXTILPPDFEGKTKMKDWISRLSKMGAADELTEQQSRQLHFDLESSYNSF 468 C +L+ +K ++ + SI+ F +++DCP A+ R + P T++ + V FIT MD L+L + A+D++ P + LPPDFEG+ + W+ LS M A+DEL + Q RQ+ FDLES+YN+F Sbjct: 70 CSRLLVQYKAAFRQVQGSEISSIDEFCRKFRLDCPLAMER-IKEDRPITIKDDKGNLNRCIA------DVVSLFITVMDKLRLEIRAMDEIQPDLRELMETMHRMSHLPPDFEGRQTVSQWLQTLSGMSASDELDDSQVRQMLFDLESAYNAF 215
BLAST of DR403408 vs. ExPASy Swiss-Prot
Match: VPS28_HUMAN (Vacuolar protein sorting-associated protein 28 homolog OS=Homo sapiens GN=VPS28 PE=1 SV=1) HSP 1 Score: 90.5077 bits (223), Expect = 9.395e-18 Identity = 50/153 (32.68%), Postives = 79/153 (51.63%), Query Frame = 1 Query: 13 CQKLIAHFKTLSSTLKDI-VPSIERFADTYKMDCPAALNRLVTSGVPATVEHKXXXXXXXXXXXXXXXECVQNFITAMDSLKLNMVAVDQVHPXXXXXXXXXXXXTILPPDFEGKTKMKDWISRLSKMGAADELTEQQSRQLHFDLESSYNSF 468 C +L+ +K ++ + SI+ F +++DCP A+ R + P T++ + V FIT MD L+L + A+D++ P + LPPDFEG+ + W+ LS M A+DEL + Q RQ+ FDLES+YN+F Sbjct: 70 CSRLLVQYKAAFRQVQGSEISSIDEFCRKFRLDCPLAMER-IKEDRPITIKDDKGNLNRCIA------DVVSLFITVMDKLRLEIRAMDEIQPDLRELMETMHRMSHLPPDFEGRQTVSQWLQTLSGMSASDELDDSQVRQMLFDLESAYNAF 215
BLAST of DR403408 vs. ExPASy Swiss-Prot
Match: VPS28_BOVIN (Vacuolar protein sorting-associated protein 28 homolog OS=Bos taurus GN=VPS28 PE=2 SV=1) HSP 1 Score: 90.5077 bits (223), Expect = 9.395e-18 Identity = 50/153 (32.68%), Postives = 79/153 (51.63%), Query Frame = 1 Query: 13 CQKLIAHFKTLSSTLKDI-VPSIERFADTYKMDCPAALNRLVTSGVPATVEHKXXXXXXXXXXXXXXXECVQNFITAMDSLKLNMVAVDQVHPXXXXXXXXXXXXTILPPDFEGKTKMKDWISRLSKMGAADELTEQQSRQLHFDLESSYNSF 468 C +L+ +K ++ + SI+ F +++DCP A+ R + P T++ + V FIT MD L+L + A+D++ P + LPPDFEG+ + W+ LS M A+DEL + Q RQ+ FDLES+YN+F Sbjct: 70 CSRLLVQYKAAFRQVQGSEISSIDEFCRKFRLDCPLAMER-IKEDRPITIKDDKGNLNRCIA------DVVSLFITVMDKLRLEIRAMDEIQPDLRELMETMHRMSHLPPDFEGRQTVSQWLQTLSGMSASDELDDSQVRQMLFDLESAYNAF 215
BLAST of DR403408 vs. ExPASy Swiss-Prot
Match: VPS28_DROME (Vacuolar protein sorting-associated protein 28 homolog OS=Drosophila melanogaster GN=Vps28 PE=1 SV=1) HSP 1 Score: 88.5817 bits (218), Expect = 3.570e-17 Identity = 51/153 (33.33%), Postives = 77/153 (50.33%), Query Frame = 1 Query: 13 CQKLIAHFKTLSSTLK-DIVPSIERFADTYKMDCPAALNRLVTSGVPATVEHKXXXXXXXXXXXXXXXECVQNFITAMDSLKLNMVAVDQVHPXXXXXXXXXXXXTILPPDFEGKTKMKDWISRLSKMGAADELTEQQSRQLHFDLESSYNSF 468 C K + +K ++ D PS+E F +++DCPAAL R + P T+ E V FIT MD L+L + +D + P +++P DF+ K K++ W+ L++M A+DEL+E Q RQ FDLES+Y F Sbjct: 58 CSKYLVQYKVAFKQVQCDEFPSVETFVKKFRLDCPAALER-IREDRPITIRDDKGNTSKCIA------EIVSLFITIMDKLRLQINTMDALQPDVKDLADNMNRLSLIPEDFDAKLKVEKWLGSLNEMQASDELSEGQVRQFLFDLESAYADF 203 The following BLAST results are available for this feature:
BLAST of DR403408 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 10
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >DR403408 ID=DR403408; Name=DR403408; organism=Citrus sinensis; type=EST; length=702bpback to top |