DR403383

Overview
NameDR403383
Unique NameDR403383
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length742
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DR403383_ssr42 microsatellite DR403383_ssr42:42..56. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig7034 contig Csv1_Contig7034:97..837. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DR403383 vs. ExPASy Swiss-Prot
Match: CYSP_PEA (Cysteine proteinase 15A OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 320.857 bits (821), Expect = 9.465e-89
Identity = 152/199 (76.38%), Postives = 176/199 (88.44%), Query Frame = 3
Query:   90 NDDDAMIRQVVPSDGEQSEDHLLNAEHHFSLFKSKFSKTYATQEEHDYRFRVFKANLRRAKRRQLLDPTAVHGVTKFSDLTPSEFRRQFLGLNRRLRLPADAQKAPILPTNDLPTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHECDPEESGSCDSGCNGGLMNSAFEYILKA 686
            N+DD +IRQVV ++    EDHLLNAEHHF+ FKSKFSK+YAT+EEHDYRF VFK+NL +AK  Q  DPTA HG+TKFSDLT SEFRRQFLGL +RLRLPA AQKAPILPT +LP DFDWR+ GAVT VKDQG+CGSCW+FS TGALEGAH+L+TG+LVSLSEQQLVDCDH CDPE++GSCDSGCNGGLMN+AFEY+L++
Sbjct:   24 NNDDFIIRQVVDNE----EDHLLNAEHHFTSFKSKFSKSYATKEEHDYRFGVFKSNLIKAKLHQNRDPTAEHGITKFSDLTASEFRRQFLGLKKRLRLPAHAQKAPILPTTNLPEDFDWREKGAVTPVKDQGSCGSCWAFSTTGALEGAHYLATGKLVSLSEQQLVDCDHVCDPEQAGSCDSGCNGGLMNNAFEYLLES 218          

HSP 2 Score: 27.335 bits (59), Expect = 9.465e-89
Identity = 11/16 (68.75%), Postives = 12/16 (75.00%), Query Frame = 1
Query:  688 GGVEREKDYPYTGXXG 735
            GGV +EKDY YTG  G
Sbjct:  219 GGVVQEKDYAYTGRDG 234          
BLAST of DR403383 vs. ExPASy Swiss-Prot
Match: RD19A_ARATH (Cysteine proteinase RD19a OS=Arabidopsis thaliana GN=RD19A PE=2 SV=1)

HSP 1 Score: 301.212 bits (770), Expect = 3.284e-83
Identity = 145/196 (73.98%), Postives = 164/196 (83.67%), Query Frame = 3
Query:   96 DDAMIRQVVPSDGEQSEDHLLNAEHHFSLFKSKFSKTYATQEEHDYRFRVFKANLRRAKRRQLLDPTAVHGVTKFSDLTPSEFRRQFLGLNRRLRLPADAQKAPILPTNDLPTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHECDPEESGSCDSGCNGGLMNSAFEYILK 683
            DD +IRQVV      +E  +L +E HFSLFK KF K YA+ EEHDYRF VFKANLRRA+R Q LDP+A HGVT+FSDLT SEFR++ LG+    +LP DA KAPILPT +LP DFDWRDHGAVT VK+QG+CGSCWSFSATGALEGA+FL+TG+LVSLSEQQLVDCDHECDPEE+ SCDSGCNGGLMNSAFEY LK
Sbjct:   29 DDLVIRQVVGG----AEPQVLTSEDHFSLFKRKFGKVYASNEEHDYRFSVFKANLRRARRHQKLDPSATHGVTQFSDLTRSEFRKKHLGVRSGFKLPKDANKAPILPTENLPEDFDWRDHGAVTPVKNQGSCGSCWSFSATGALEGANFLATGKLVSLSEQQLVDCDHECDPEEADSCDSGCNGGLMNSAFEYTLK 220          

HSP 2 Score: 28.4906 bits (62), Expect = 3.284e-83
Identity = 10/18 (55.56%), Postives = 14/18 (77.78%), Query Frame = 1
Query:  682 RLGGVEREKDYPYTGXXG 735
            + GG+ +E+DYPYTG  G
Sbjct:  220 KTGGLMKEEDYPYTGKDG 237          
BLAST of DR403383 vs. ExPASy Swiss-Prot
Match: A494_ARATH (Probable cysteine proteinase A494 OS=Arabidopsis thaliana GN=At2g21430 PE=2 SV=2)

HSP 1 Score: 290.426 bits (742), Expect = 6.108e-82
Identity = 139/197 (70.56%), Postives = 162/197 (82.23%), Query Frame = 3
Query:   93 DDDAMIRQVVPSDGEQSEDHLLNAEHHFSLFKSKFSKTYATQEEHDYRFRVFKANLRRAKRRQLLDPTAVHGVTKFSDLTPSEFRRQFLGLNRRLRLPADAQKAPILPTNDLPTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHECDPEESGSCDSGCNGGLMNSAFEYILK 683
            D+D +IRQVV    +++E  +L++E HF+LFK KF K Y + EEH YRF VFKANL RA R Q +DP+A HGVT+FSDLT SEFRR+ LG+    +LP DA +APILPT +LP +FDWRD GAVT VK+QG+CGSCWSFS TGALEGAHFL+TG+LVSLSEQQLVDCDHECDPEE GSCDSGCNGGLMNSAFEY LK
Sbjct:   25 DEDVLIRQVV----DETEPKVLSSEDHFTLFKKKFGKVYGSIEEHYYRFSVFKANLLRAMRHQKMDPSARHGVTQFSDLTRSEFRRKHLGVKGGFKLPKDANQAPILPTQNLPEEFDWRDRGAVTPVKNQGSCGSCWSFSTTGALEGAHFLATGKLVSLSEQQLVDCDHECDPEEEGSCDSGCNGGLMNSAFEYTLK 217          

HSP 2 Score: 35.039 bits (79), Expect = 6.108e-82
Identity = 14/20 (70.00%), Postives = 16/20 (80.00%), Query Frame = 1
Query:  682 RLGGVEREKDYPYTGXXGGS 741
            + GG+ REKDYPYTG  GGS
Sbjct:  217 KTGGLMREKDYPYTGTDGGS 236          
BLAST of DR403383 vs. ExPASy Swiss-Prot
Match: CYSP1_MAIZE (Cysteine proteinase 1 OS=Zea mays GN=CCP1 PE=2 SV=1)

HSP 1 Score: 263.848 bits (673), Expect = 6.735e-70
Identity = 130/202 (64.36%), Postives = 151/202 (74.75%), Query Frame = 3
Query:   96 DDAMIRQVVPSDGEQSEDHLLNAEHHFSLFKSKFSKTYATQEEHDYRFRVFKANLRRAKRRQLLDPTAVHGVTKFSDLTPSEFRRQFLGLNRRLR-----LPADAQKAPILPTNDLPTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHECDPEESGSCDSGCNGGLMNSAFEYILKA 686
            +D +IRQVVP  G    D  LNAE HF  F  +F K+Y   +EH YR  VFK NLRRA+R QLLDP+A HGVTKFSDLTP+EFRR +LGL +  R     L   A +AP+LPT+ LP DFDWRDHGAV  VK+QG+CGSCWSFSA+GALEGAH+L+TG+L  LSEQQ VDCDHECD  E  SCDSGCNGGLM +AF Y+ KA
Sbjct:   24 EDPLIRQVVP--GGDDNDLELNAESHFLSFVQRFGKSYKDADEHAYRLSVFKDNLRRARRHQLLDPSAEHGVTKFSDLTPAEFRRTYLGLRKSRRALLRELGESAHEAPVLPTDGLPDDFDWRDHGAVGPVKNQGSCGSCWSFSASGALEGAHYLATGKLEVLSEQQFVDCDHECDSSEPDSCDSGCNGGLMTTAFSYLQKA 223          
BLAST of DR403383 vs. ExPASy Swiss-Prot
Match: CYSP1_DICDI (Cysteine proteinase 1 OS=Dictyostelium discoideum GN=cprA PE=1 SV=2)

HSP 1 Score: 159.458 bits (402), Expect = 1.517e-39
Identity = 87/184 (47.28%), Postives = 112/184 (60.87%), Query Frame = 3
Query:  156 LNAEHHFSLFKSKFSKTYATQEEHDYRFRVFKANLRRAKRRQLL----DPTAVHGVTKFSDLTPSEFRRQFLGLNRRLRLPADAQKAPILPT---NDLPTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHEC-DPEESGSCDSGCNGGLMNSAFEYILK 683
            L  +  F  F+ KF+K Y+  EE+  RF +FK+NL + +   L+          GV KF+DL+  EF+  +L  N+      D   A  L     N +PT FDWR  GAVT VK+QG CGSCWSFS TG +EG HF+S  +LVSLSEQ LVDCDHEC + E   +CD GCNGGL  +A+ YI+K
Sbjct:   23 LEEQSQFLEFQDKFNKKYS-HEEYLERFEIFKSNLGKIEELNLIAINHKADTKFGVNKFADLSSDEFKNYYLN-NKEAIFTDDLPVADYLDDEFINSIPTAFDWRTRGAVTPVKNQGQCGSCWSFSTTGNVEGQHFISQNKLVSLSEQNLVDCDHECMEYEGEQACDEGCNGGLQPNAYNYIIK 204          

HSP 2 Score: 24.2534 bits (51), Expect = 1.517e-39
Identity = 8/16 (50.00%), Postives = 10/16 (62.50%), Query Frame = 1
Query:  688 GGVEREKDYPYTGXXG 735
            GG++ E  YPYT   G
Sbjct:  206 GGIQTESSYPYTAETG 221          
BLAST of DR403383 vs. ExPASy Swiss-Prot
Match: CATF_MOUSE (Cathepsin F OS=Mus musculus GN=Ctsf PE=2 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 5.298e-33
Identity = 77/170 (45.29%), Postives = 106/170 (62.35%), Query Frame = 3
Query:  174 FSLFKSKFSKTYATQEEHDYRFRVFKANLRRAKRRQLLDP-TAVHGVTKFSDLTPSEFRRQFLGLNRRLRLPADAQKAPILPTNDL-PTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHECDPEESGSCDSGCNGGLMNSAFEYI 677
            F  F + +++TY ++EE  +R  VF  N+ RA++ Q LD  TA +G+TKFSDLT  EF   +L  N  L+  +  + +P    NDL P ++DWR  GAVT VK+QG CGSCW+FS TG +EG  FL+ G L+SLSEQ+L+DCD           D  C GGL ++A+  I
Sbjct:  165 FKDFMTTYNRTYESREEAQWRLTVFARNMIRAQKIQALDRGTAQYGITKFSDLTEEEFHTIYL--NPLLQKESGRKMSPAKSINDLAPPEWDWRKKGAVTEVKNQGMCGSCWAFSVTGNVEGQWFLNRGTLLSLSEQELLDCD---------KVDKACLGGLPSNAYAAI 323          

HSP 2 Score: 24.6386 bits (52), Expect = 5.298e-33
Identity = 12/25 (48.00%), Postives = 15/25 (60.00%), Query Frame = 1
Query:  661 LPLSTYS---RLGGVEREKDYPYTG 726
            LP + Y+    LGG+E E DY Y G
Sbjct:  315 LPSNAYAAIKNLGGLETEDDYGYQG 339          
BLAST of DR403383 vs. ExPASy Swiss-Prot
Match: CATL_SCHMA (Cathepsin L OS=Schistosoma mansoni GN=CL1 PE=2 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 6.585e-33
Identity = 78/179 (43.58%), Postives = 110/179 (61.45%), Query Frame = 3
Query:  159 NAEHHFSLFKSKFSKTYATQEEHDYRFRVFKANLRRAKRRQL-LDPTAVHGVTKFSDLTPSEFRRQFLGLNRRLRLPADAQKAPIL---PTNDLPTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHECDPEESGSCDSGCNGGLMNSAFEYILK 683
            N +  +  FK K+ K Y   E+ + RF +FK+N+ +A+  Q+ +  +A++GVT +SDLT  EF R  L  +    +P+     P       N++P +FDWR+ GAVT VK+QG CGSCW+FS TG +E   F  TG+L+SLSEQQLVDCD           D GCNGGL ++A+E I+K
Sbjct:   15 NVDEKYVQFKLKYRKQYHETED-EIRFNIFKSNILKAQLYQVFVRGSAIYGVTPYSDLTTDEFARTHLTAS--WVVPSSRSNTPTSLGKEVNNIPKNFDWREKGAVTEVKNQGMCGSCWAFSTTGNVESQWFRKTGKLLSLSEQQLVDCD---------GLDDGCNGGLPSNAYESIIK 181          
BLAST of DR403383 vs. ExPASy Swiss-Prot
Match: CATF_HUMAN (Cathepsin F OS=Homo sapiens GN=CTSF PE=1 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 6.895e-33
Identity = 81/181 (44.75%), Postives = 106/181 (58.56%), Query Frame = 3
Query:  141 SEDHLLNAEHHFSLFKSKFSKTYATQEEHDYRFRVFKANLRRAKRRQLLDP-TAVHGVTKFSDLTPSEFRRQFLGLNRRLRLPADAQKAPILPTNDL-PTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHECDPEESGSCDSGCNGGLMNSAFEYI 677
            S+D  +     F  F   +++TY ++EE  +R  VF  N+ RA++ Q LD  TA +GVTKFSDLT  EFR  +L  N  LR     +        DL P ++DWR  GAVT VKDQG CGSCW+FS TG +EG  FL+ G L+SLSEQ+L+DCD           D  C GGL ++A+  I
Sbjct:  176 SQDLPVKMASIFKNFVITYNRTYESKEEARWRLSVFVNNMVRAQKIQALDRGTAQYGVTKFSDLTEEEFRTIYL--NTLLRKEPGNKMKQAKSVGDLAPPEWDWRSKGAVTKVKDQGMCGSCWAFSVTGNVEGQWFLNQGTLLSLSEQELLDCD---------KMDKACMGGLPSNAYSAI 345          

HSP 2 Score: 26.1794 bits (56), Expect = 6.895e-33
Identity = 13/25 (52.00%), Postives = 15/25 (60.00%), Query Frame = 1
Query:  661 LPLSTYS---RLGGVEREKDYPYTG 726
            LP + YS    LGG+E E DY Y G
Sbjct:  337 LPSNAYSAIKNLGGLETEDDYSYQG 361          
BLAST of DR403383 vs. ExPASy Swiss-Prot
Match: CYSP_TRYBB (Cysteine proteinase OS=Trypanosoma brucei brucei PE=1 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 8.600e-33
Identity = 79/184 (42.93%), Postives = 103/184 (55.98%), Query Frame = 3
Query:  165 EHHFSLFKSKFSKTYATQEEHDYRFRVFKANLRRAKRRQLLDPTAVHGVTKFSDLTPSEFRRQ-------FLGLNRRLRLPADAQKAPILPTNDLPTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHECDPEESGSCDSGCNGGLMNSAFEYILKAXWG 695
            E  F+ FK K+ K Y   +E  +RFR F+ N+ +AK +   +P A  GVT FSD+T  EFR +       F    +RLR      K   + T   P   DWR+ GAVT VK QG CGSCW+FS  G +EG   ++   LVSLSEQ LV CD         + DSGCNGGLM++AF +I+ +  G
Sbjct:   38 EMRFAAFKKKYGKVYKDAKEEAFRFRAFEENMEQAKIQAAANPYATFGVTPFSDMTREEFRARYRNGASYFAAAQKRLR------KTVNVTTGRAPAAVDWREKGAVTPVKVQGQCGSCWAFSTIGNIEGQWQVAGNPLVSLSEQMLVSCD---------TIDSGCNGGLMDNAFNWIVNSNGG 206          
BLAST of DR403383 vs. ExPASy Swiss-Prot
Match: ORYA_ORYSJ (Oryzain alpha chain OS=Oryza sativa subsp. japonica GN=Os04g0650000 PE=1 SV=2)

HSP 1 Score: 136.346 bits (342), Expect = 8.986e-33
Identity = 76/192 (39.58%), Postives = 109/192 (56.77%), Query Frame = 3
Query:  120 VPSDGEQSEDHLLNAEHHFSLFKSKFSKTYATQEEHDYRFRVFKANLRRAKRRQLLDPTAVH----GVTKFSDLTPSEFRRQFLGLNRRLRLPADAQKAPILPTND-LPTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHECDPEESGSCDSGCNGGLMNSAFEYIL 680
            + S GE+SE+    A   ++ +K++  K+Y    E + R+  F+ NLR            VH    G+ +F+DLT  E+R  +LGL  + R         +   N+ LP   DWR  GAV  +KDQG CGSCW+FSA  A+EG + + TG+L+SLSEQ+LVDCD         S + GCNGGLM+ AF++I+
Sbjct:   25 IVSYGERSEEE---ARRLYAEWKAEHGKSYNAVGEEERRYAAFRDNLRYIDEHNAAADAGVHSFRLGLNRFADLTNEEYRDTYLGLRNKPRRERKVSDRYLAADNEALPESVDWRTKGAVAEIKDQGGCGSCWAFSAIAAVEGINQIVTGDLISLSEQELVDCD--------TSYNEGCNGGLMDYAFDFII 205          

HSP 2 Score: 24.6386 bits (52), Expect = 8.986e-33
Identity = 8/13 (61.54%), Postives = 10/13 (76.92%), Query Frame = 1
Query:  688 GGVEREKDYPYTG 726
            GG++ E DYPY G
Sbjct:  208 GGIDTEDDYPYKG 220          
The following BLAST results are available for this feature:
BLAST of DR403383 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 152
Match NameE-valueIdentityDescription
CYSP_PEA9.465e-8976.38Cysteine proteinase 15A OS=Pisum sativum PE=2 SV=1[more]
RD19A_ARATH3.284e-8373.98Cysteine proteinase RD19a OS=Arabidopsis thaliana ... [more]
A494_ARATH6.108e-8270.56Probable cysteine proteinase A494 OS=Arabidopsis t... [more]
CYSP1_MAIZE6.735e-7064.36Cysteine proteinase 1 OS=Zea mays GN=CCP1 PE=2 SV=... [more]
CYSP1_DICDI1.517e-3947.28Cysteine proteinase 1 OS=Dictyostelium discoideum ... [more]
CATF_MOUSE5.298e-3345.29Cathepsin F OS=Mus musculus GN=Ctsf PE=2 SV=1[more]
CATL_SCHMA6.585e-3343.58Cathepsin L OS=Schistosoma mansoni GN=CL1 PE=2 SV=... [more]
CATF_HUMAN6.895e-3344.75Cathepsin F OS=Homo sapiens GN=CTSF PE=1 SV=1[more]
CYSP_TRYBB8.600e-3342.93Cysteine proteinase OS=Trypanosoma brucei brucei P... [more]
ORYA_ORYSJ8.986e-3339.58Oryzain alpha chain OS=Oryza sativa subsp. japonic... [more]

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Properties
Property NameValue
Genbank descriptionCSAF-PNP1244N07 Flavedo Mature Citrus sinensis cDNA clone CSAF-PNP1244N07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR403383 ID=DR403383; Name=DR403383; organism=Citrus sinensis; type=EST; length=742bp
GGGGAAACAAATCGAAAATGGAGCGCCTTATTCTCTCCTCTCTCCTCCTC
CTCCTCCTATCTTCTGTGCTTGCGTCCGCTGTAGCTGTCAACGACGACGA
TGCTATGATCAGACAGGTCGTGCCGTCAGACGGCGAACAATCCGAAGATC
ATCTCCTGAACGCGGAGCACCACTTCTCCCTCTTCAAGTCCAAATTCTCC
AAGACTTACGCCACCCAGGAGGAGCACGATTACCGATTCCGCGTGTTCAA
GGCTAATCTGCGCCGAGCAAAGCGACGCCAGCTCCTGGACCCCACTGCTG
TCCACGGTGTCACCAAGTTCTCCGACTTAACGCCGTCTGAATTCCGCCGT
CAGTTCCTTGGCTTGAATAGGCGGCTTCGGCTGCCAGCTGACGCTCAAAA
GGCTCCTATTCTCCCCACCAACGATCTTCCTACTGACTTTGACTGGCGTG
ATCACGGCGCCGTTACTGGCGTCAAAGACCAGGGCGCATGTGGATCGTGC
TGGTCGTTTAGTGCAACCGGCGCTTTGGAGGGAGCGCACTTCTTATCGAC
GGGCGAGCTTGTCAGCCTCAGTGAGCAACAGCTTGTGGACTGTGATCACG
AGTGTGATCCAGAGGAATCTGGTTCATGTGACTCTGGGTGCAATGGTGGG
CTAATGAACTCTGCCTTTGAGTACATACTCAAGGCTNGGTGGGGTTGAGC
GAGAGAAGGACTACCCTTACACTGGGANNNACGGTGGTTCCT
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