DR403376

Overview
NameDR403376
Unique NameDR403376
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length740
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DR403376_ssr137 microsatellite DR403376_ssr137:137..151. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig1868 contig Csv1_Contig1868:1..739. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DR403376 vs. ExPASy Swiss-Prot
Match: ARG2_PHAAU (Indole-3-acetic acid-induced protein ARG2 OS=Phaseolus aureus GN=ARG2 PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.128e-16
Identity = 47/94 (50.00%), Postives = 56/94 (59.57%), Query Frame = 1
Query:  169 MARSFSNAKLFSALVADGISNAIYKRGYSAASQXXXXXXXXXXXXXXXMLKKPAEEMTGSSEKVSWVPDPVTGVYRPENLANELGGADLRAMFL 450
            MARSF+N K+ SALVADG SN   + G++AA+                M+ K  EE     EKVSWVPDPVTG YRPEN  NE+  AD+RA  L
Sbjct:    1 MARSFTNVKVLSALVADGFSNTTTRHGFAAAAAATQSATRGGASIGGNMVPKSGEEKVRGGEKVSWVPDPVTGYYRPEN-TNEIDVADMRATVL 93          
BLAST of DR403376 vs. ExPASy Swiss-Prot
Match: LEA5_CITSI (Late embryogenesis abundant protein Lea5 OS=Citrus sinensis GN=LEA5 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 8.368e-12
Identity = 43/96 (44.79%), Postives = 54/96 (56.25%), Query Frame = 1
Query:  169 MARSFSNAKLFSALVADGISNAIYKRGYSAASQXXXXXXXXXXXXXXXMLKKPAEEMTGSSEKVSWVPDPVTGVYRPENLANELGGADLRAMFLKH 456
            MARS   AKL  A VADGIS +I +RGY+AA+                 L+    E +G+S   +W PDP+TG YRPEN A E+  A+LR M L H
Sbjct:    1 MARSLFKAKLLLAPVADGISLSISRRGYAAAAPLGTISRTGIMEKND--LRPAVREDSGASS--AWAPDPITGYYRPENRAVEIDPAELREMLLNH 92          
BLAST of DR403376 vs. ExPASy Swiss-Prot
Match: LEA5D_GOSHI (Late embryogenesis abundant protein Lea5-D OS=Gossypium hirsutum GN=LEA5-D PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.084e-11
Identity = 39/100 (39.00%), Postives = 52/100 (52.00%), Query Frame = 1
Query:  169 MARSFSNAKLFSALVADGISNAIYKRGYSAASQXXXXXXXXXXXXXXXMLKKPAEEMTGSSE----KVSWVPDPVTGVYRPENLANELGGADLRAMFLKH 456
            MARS S+ KL  A + DG+  +I +RGYS A                 + ++ A + + SSE      +W PDPVTG YRPEN   E+  A+LR M L H
Sbjct:    1 MARSVSSFKLLGASIFDGLYVSISRRGYSGAPPAAVTASFGRPGAMGKVERRDAMKESSSSETRAYSSAWAPDPVTGYYRPENCGAEIDAAELREMLLNH 100          
The following BLAST results are available for this feature:
BLAST of DR403376 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
ARG2_PHAAU1.128e-1650.00Indole-3-acetic acid-induced protein ARG2 OS=Phase... [more]
LEA5_CITSI8.368e-1244.79Late embryogenesis abundant protein Lea5 OS=Citrus... [more]
LEA5D_GOSHI7.084e-1139.00Late embryogenesis abundant protein Lea5-D OS=Goss... [more]
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Properties
Property NameValue
Genbank descriptionCSAF-PNP1244M23 Flavedo Mature Citrus sinensis cDNA clone CSAF-PNP1244M23 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR403376 ID=DR403376; Name=DR403376; organism=Citrus sinensis; type=EST; length=740bp
GGGGGAACCCATAAACACAAACACTTTGAGGGGATTTTCGCGCTACGAAG
AGGGAAGTTTCTTTAGCTGCTGCTGAAGGCTTTTCGATAGAAAGAAAAGA
AGGAAATTGCTTTCTGCAGCAGCGTTAAGATCTCTTATCATCATCATCAT
CCCACATAACTAAGAAAAATGGCTCGCTCTTTCTCAAACGCTAAGCTTTT
CTCTGCTCTCGTCGCTGACGGAATCTCTAACGCCATCTACAAAAGAGGAT
ACTCGGCGGCATCACAAGGCGCTGTGTCGCGGGCAACAGGGGGAGCTAGG
AGTGCTGCTGCGATGTTGAAGAAACCAGCAGAAGAGATGACAGGATCCAG
TGAGAAGGTCTCGTGGGTCCCAGACCCAGTCACTGGTGTCTACAGGCCGG
AGAATCTCGCCAACGAGCTCGGTGGGGCCGACCTCAGAGCCATGTTCTTG
AAGCACAACAACTGATCATCAAAATTAATAAGTATTATTATTAATATATA
TTAATTCGGACATGGAAACTGAGGAAGGACGAAAGAAAAATTAAAAAAAG
GTTAAAAAGGGATTTGTTCTGATGTGGTCAGCCGCATGAGCTCTCGAGGA
ATTCCGGGAAATTGGCGTAGCAGCTGCAGCTCCCCTGTTCTCTCTGTTTT
GACTTGGGGATCCAAACTAGATTTTGTATTGCATGTAACATTCCTGTTTT
TTTGTTGCCATTTTTCGGGNNNAAAGATGATTTATTATTT
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