DR403367

Overview
NameDR403367
Unique NameDR403367
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length760
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1408 contig Csv1_Contig1408:3..762. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DR403367 vs. ExPASy Swiss-Prot
Match: RTNLA_ARATH (Reticulon-like protein B1 OS=Arabidopsis thaliana GN=RTNLB1 PE=1 SV=1)

HSP 1 Score: 263.462 bits (672), Expect = 9.263e-70
Identity = 125/180 (69.44%), Postives = 151/180 (83.89%), Query Frame = 1
Query:  220 AFKSKVFRLFGREKPIHHVLGAGKPADIFLWRNKKISAGVLGGATAMWVLFELLEYHLITLVCHISILSLAVLFLWSNASTFINKSPPEIPVVTLPEKFVLEFASALRYEINRALAVLREIASGRDLKKFLGVIAGLWLLSIVGNWCNFVTLFYIVFVLLHTVPVIYEKYEDKIDSFGEK 759
            + KSKV+RLFGRE+P+H VLG GKPADIF+W+NKK+S GVLGGATA WV+FEL+EYHL+TL+CH+ I+ LAVLFLWSNA+ FINKSPP+IP V +PE+ +L+ AS LR EINR  + LREIASGRDLKKFL  IAGLW+LSI+G   NF+TL YI  VLL TVP+ Y+KYEDK+D  GEK
Sbjct:   65 SMKSKVYRLFGREQPVHKVLGGGKPADIFMWKNKKMSGGVLGGATAAWVVFELMEYHLLTLLCHVMIVVLAVLFLWSNATMFINKSPPKIPEVHIPEEPILQLASGLRIEINRGFSSLREIASGRDLKKFLIAIAGLWVLSILGGCFNFLTLAYIALVLLFTVPLAYDKYEDKVDPLGEK 244          
BLAST of DR403367 vs. ExPASy Swiss-Prot
Match: RTNLC_ARATH (Reticulon-like protein B3 OS=Arabidopsis thaliana GN=RTNLB3 PE=1 SV=1)

HSP 1 Score: 262.692 bits (670), Expect = 1.580e-69
Identity = 127/180 (70.56%), Postives = 150/180 (83.33%), Query Frame = 1
Query:  220 AFKSKVFRLFGREKPIHHVLGAGKPADIFLWRNKKISAGVLGGATAMWVLFELLEYHLITLVCHISILSLAVLFLWSNASTFINKSPPEIPVVTLPEKFVLEFASALRYEINRALAVLREIASGRDLKKFLGVIAGLWLLSIVGNWCNFVTLFYIVFVLLHTVPVIYEKYEDKIDSFGEK 759
            + K+K++RLFGRE+P+H + G GKPADIFLWRNKK+S GVLG AT  W+LFELLEY+L+TL  HISIL+LAVLFLWS+ASTFI+KSP  IP V +PE  VL+ AS LR EINR   VLR+IASGRDLKKFL VIAGLW+LS VG+ CNF+TL YI  VLL T+PV+YEKYEDK+D FGEK
Sbjct:   40 SLKTKIYRLFGREQPLHKLFGGGKPADIFLWRNKKVSGGVLGAATVSWILFELLEYNLLTLFGHISILALAVLFLWSSASTFIHKSPLHIPEVHIPEDVVLQLASGLRIEINRGFTVLRDIASGRDLKKFLLVIAGLWVLSKVGSSCNFLTLIYIATVLLFTIPVLYEKYEDKVDDFGEK 219          
BLAST of DR403367 vs. ExPASy Swiss-Prot
Match: RTNLB_ARATH (Reticulon-like protein B2 OS=Arabidopsis thaliana GN=RTNLB2 PE=1 SV=1)

HSP 1 Score: 261.536 bits (667), Expect = 3.520e-69
Identity = 121/180 (67.22%), Postives = 153/180 (85.00%), Query Frame = 1
Query:  220 AFKSKVFRLFGREKPIHHVLGAGKPADIFLWRNKKISAGVLGGATAMWVLFELLEYHLITLVCHISILSLAVLFLWSNASTFINKSPPEIPVVTLPEKFVLEFASALRYEINRALAVLREIASGRDLKKFLGVIAGLWLLSIVGNWCNFVTLFYIVFVLLHTVPVIYEKYEDKIDSFGEK 759
            + KSKV+RLFGRE+P+H VLG GKPADIF+W++KK+S GV GGAT  WVLFEL+EYHL+TL+CH+ I++LAVLFLWSNA+ FI+KSPP+IP V +PE+ +L+ AS LR EINR ++ LREIASGRD+KKFL  IAGLW+LSI+G   +F+TL YI  VLL TVP+ Y+KYEDK+DS+GEK
Sbjct:   61 SLKSKVYRLFGRERPVHKVLGGGKPADIFMWKDKKMSGGVFGGATVAWVLFELMEYHLLTLLCHVMIVALAVLFLWSNATMFIHKSPPKIPEVHIPEEPLLQLASGLRIEINRGISSLREIASGRDIKKFLSAIAGLWVLSILGGCYSFLTLAYIALVLLFTVPLFYDKYEDKVDSYGEK 240          
BLAST of DR403367 vs. ExPASy Swiss-Prot
Match: RTNLD_ARATH (Reticulon-like protein B4 OS=Arabidopsis thaliana GN=RTNLB4 PE=1 SV=1)

HSP 1 Score: 260.766 bits (665), Expect = 6.004e-69
Identity = 121/180 (67.22%), Postives = 147/180 (81.67%), Query Frame = 1
Query:  220 AFKSKVFRLFGREKPIHHVLGAGKPADIFLWRNKKISAGVLGGATAMWVLFELLEYHLITLVCHISILSLAVLFLWSNASTFINKSPPEIPVVTLPEKFVLEFASALRYEINRALAVLREIASGRDLKKFLGVIAGLWLLSIVGNWCNFVTLFYIVFVLLHTVPVIYEKYEDKIDSFGEK 759
            +FKSK++RLFGREKP+H VLG GKPADIFLWRNKK+S GVLG  TA WVLFEL EYHL+  +CH +I +LA LFLWSNA TFI+KS P IP V +PE  +L+  S LR EINR L +LR IASG+D+KKF+ VIAGLW+LSI+G+  NF+TLFY   VLL T+PV+YEKYEDK+D++GEK
Sbjct:   44 SFKSKIYRLFGREKPVHKVLGGGKPADIFLWRNKKVSGGVLGAVTASWVLFELFEYHLLAFLCHFAIFALAALFLWSNACTFIHKSTPHIPEVHIPEDPILQLVSGLRIEINRGLTLLRNIASGKDVKKFILVIAGLWVLSIIGSCYNFLTLFYTATVLLFTIPVLYEKYEDKVDAYGEK 223          
BLAST of DR403367 vs. ExPASy Swiss-Prot
Match: RTNLE_ARATH (Reticulon-like protein B5 OS=Arabidopsis thaliana GN=RTNLB5 PE=1 SV=1)

HSP 1 Score: 258.07 bits (658), Expect = 3.892e-68
Identity = 125/223 (56.05%), Postives = 163/223 (73.09%), Query Frame = 1
Query:   94 MAEHAPEHESADKSLVEKITXXXXXXXXXXXXXXXXXXXXXX-AFKSKVFRLFGREKPIHHVLGAGKPADIFLWRNKKISAGVLGGATAMWVLFELLEYHLITLVCHISILSLAVLFLWSNASTFINKSPPEIPVVTLPEKFVLEFASALRYEINRALAVLREIASGRDLKKFLGVIAGLWLLSIVGNWCNFVTLFYIVFVLLHTVPVIYEKYEDKIDSFGEK 759
            MAE   +    ++SL+EKI+                       A K+K++R+FGREKP+H VLG GKPAD+FLWR+KK+S  VLG ATA+WVLFEL+EYHL++L+CHISIL+L  LFLWSNA T INK+ P+IP + +PE+  L  AS+LR E+N+A  +LR IA GRDLKKFL V+ GLW++S+VGNW NF+TL YI FV+LHTVP++YEK+EDK+D   EK
Sbjct:    1 MAEEIEKSVPTEESLMEKISEKIHHHDSSSSSESEYEKPDSPSAVKAKIYRMFGREKPVHKVLGGGKPADVFLWRDKKLSGAVLGVATAIWVLFELVEYHLLSLLCHISILALGGLFLWSNAHTLINKTSPQIPEIHVPEEAFLVVASSLRNELNQAFVILRSIALGRDLKKFLMVVVGLWIISVVGNWFNFLTLVYICFVILHTVPMLYEKHEDKVDPLAEK 223          
BLAST of DR403367 vs. ExPASy Swiss-Prot
Match: RTNLF_ARATH (Reticulon-like protein B6 OS=Arabidopsis thaliana GN=RTNLB6 PE=1 SV=1)

HSP 1 Score: 248.825 bits (634), Expect = 2.361e-65
Identity = 115/180 (63.89%), Postives = 146/180 (81.11%), Query Frame = 1
Query:  220 AFKSKVFRLFGREKPIHHVLGAGKPADIFLWRNKKISAGVLGGATAMWVLFELLEYHLITLVCHISILSLAVLFLWSNASTFINKSPPEIPVVTLPEKFVLEFASALRYEINRALAVLREIASGRDLKKFLGVIAGLWLLSIVGNWCNFVTLFYIVFVLLHTVPVIYEKYEDKIDSFGEK 759
            A K+K++RLFGREKP+H VLG G PAD+FLWR+KK+SA VLG ATA+WVLFEL+EYH ++LVCHI I +LA LFL SNA  F+NK+PP+IP + + E+  L   SALR E+N+A  +LR IA GRDLKKFL V+ GLW++S+VGNW NF+TL YI FV+LHTVP++YEK+EDK+D   EK
Sbjct:   44 ALKAKIYRLFGREKPVHKVLGGGLPADVFLWRDKKLSASVLGVATAIWVLFELVEYHFLSLVCHILIFALAALFLLSNAHAFMNKTPPKIPEIHIKEEHFLMIVSALRNELNQAFVILRSIALGRDLKKFLMVVFGLWIISVVGNWFNFLTLVYICFVVLHTVPMLYEKHEDKVDPVAEK 223          
BLAST of DR403367 vs. ExPASy Swiss-Prot
Match: RTNLH_ARATH (Reticulon-like protein B8 OS=Arabidopsis thaliana GN=RTNLB8 PE=1 SV=1)

HSP 1 Score: 199.134 bits (505), Expect = 2.145e-50
Identity = 91/174 (52.30%), Postives = 127/174 (72.99%), Query Frame = 1
Query:  229 SKVFRLFGREKPIHHVLGAGKPADIFLWRNKKISAGVLGGATAMWVLFELLEYHLITLVCHISILSLAVLFLWSNASTFINKSPPEIPVVTLPEKFVLEFASALRYEINRALAVLREIASGRDLKKFLGVIAGLWLLSIVGNWCNFVTLFYIVFVLLHTVPVIYEKYEDKIDSF 750
            S+  RLF R+KPIHHVLG GK AD+ LWRNKKISA VL GATA+WVLFE + +H ++LVC+  +L +   F+WSNAS F+N+S   +P + LP+ F  E   A+  E+NR L  L+++A   +LK+FL  + GLW+ ++VG+ CNF+T+ YI FV  HT+PV+YE+YED++D F
Sbjct:   40 SRFNRLFDRQKPIHHVLGGGKSADVLLWRNKKISASVLMGATAIWVLFEWINFHFLSLVCYALLLGMIAQFVWSNASGFLNRSQSRVPRLVLPKDFFAEVGVAVGKEVNRGLLFLQDLACKGNLKQFLMAVIGLWVAAMVGSCCNFLTVLYIGFVGAHTMPVLYERYEDEVDGF 213          
BLAST of DR403367 vs. ExPASy Swiss-Prot
Match: RTNLG_ARATH (Reticulon-like protein B7 OS=Arabidopsis thaliana GN=RTNLB7 PE=2 SV=2)

HSP 1 Score: 196.823 bits (499), Expect = 1.065e-49
Identity = 92/175 (52.57%), Postives = 128/175 (73.14%), Query Frame = 1
Query:  235 VFRLFGREKPIHHVLGAGKPADIFLWRNKKISAGVLGGATAMWVLFELLEYHLITLVCHISILSLAVLFLWSNASTFINKSPPEIPVVTLPEKFVLEFASALRYEINRALAVLREIASGRDLKKFLGVIAGLWLLSIVGNWCNFVTLFYIVFVLLHTVPVIYEKYEDKIDSFGEK 759
            ++R+FGRE+PIH VLG GKPAD+ LWR+KK++ G+L   T +W+LF      L+T +C  SIL L + FLWSNA   +NKSP  +  + +PEK +L+ ASA+ +E+N A A LR IA  RD+K F+  + GLWL+S++GNW +F++L YI FVL+HTVP++YEKYED+ID   EK
Sbjct:   51 IYRMFGRERPIHMVLGGGKPADVLLWRDKKVTLGLLSAVTVIWLLFGFGGRRLLTSLCRGSILFLLLSFLWSNA---LNKSPENMMDIYIPEKPLLQAASAMTFELNCAFATLRSIALERDIKNFVMAVIGLWLVSVIGNWFSFLSLLYICFVLIHTVPMLYEKYEDEIDPIAEK 222          
BLAST of DR403367 vs. ExPASy Swiss-Prot
Match: RTNLI_ARATH (Reticulon-like protein B9 OS=Arabidopsis thaliana GN=RTNLB9 PE=2 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 1.763e-36
Identity = 74/176 (42.05%), Postives = 107/176 (60.80%), Query Frame = 1
Query:  232 KVFRLFGREKPIHHVLGAGKPADIFLWRNKKISAGVLGGATAMWVLFELLEYHLITLVCHISILSLAVLFLWSNASTFINKSPPEIPVVTLPEKFVLEFASALRYEINRALAVLREIASGRDLKKFLGVIAGLWLLSIVGNWCNFVTLFYIVFVLLHTVPVIYEKYEDKIDSFGEK 759
            K  +LF R++ IH + G GK ADI LWR  KI+A ++ G + +W L E++EY+ ITL+CH S+ S+   F+WS AS F+N   P IP V L E    + A +     N+ L  L ++A GRD   F      L+++SI+G + NFV L +I FV + T+PV+YE YED +D+   K
Sbjct:   19 KTTKLFTRQRSIHSIFGGGKVADILLWREPKIAATLVIGVSILWFLMEVVEYNFITLICHASMTSMLFFFIWSTASDFLNWERPLIPEVVLDESSFKQLARSFHVRFNQILTKLLDVACGRDPPLFFLTTISLYIVSIIGTYFNFVNLLFIGFVSMQTLPVMYEMYEDDVDTAAGK 194          
BLAST of DR403367 vs. ExPASy Swiss-Prot
Match: RTNLL_ARATH (Reticulon-like protein B12 OS=Arabidopsis thaliana GN=RTNLB12 PE=2 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 2.466e-30
Identity = 62/167 (37.13%), Postives = 101/167 (60.48%), Query Frame = 1
Query:  241 RLFGREKPIHHVLGAGKPADIFLWRNKKISAGVLGGATAMWVLFELLEYHLITLVCHISILSLAVLFLWSNASTFINKSPPEIPVVTLPEKFVLEFASALRYEINRALAVLREIASGRDLKKFLGVIAGLWLLSIVGNWCNFVTLFYIVFVLLHTVPVIYEKYEDKI 741
            +LF R++ IH +LG G  AD+ LWR K +S G++    A W++FE   Y + TL+  + +L L++LFLWS +++ +N+  P +P   + E    E +  LR  +N+ L V  +IA  RD + +  V   L+LLS++G+  +F TL +   +++ TVP  YE+YED I
Sbjct:    7 KLFNRDRTIHEILGGGIVADVMLWRKKNVSVGIVTVTIASWMVFEAFAYTIFTLISSVLLLLLSILFLWSKSASILNRPSPPLPEFQISEAMAEEASIWLRIHVNKLLQVSHDIAMARDSELYTKVAVSLFLLSLIGSLMDFQTLCHTSVLVVMTVPAFYERYEDYI 173          
The following BLAST results are available for this feature:
BLAST of DR403367 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
RTNLA_ARATH9.263e-7069.44Reticulon-like protein B1 OS=Arabidopsis thaliana ... [more]
RTNLC_ARATH1.580e-6970.56Reticulon-like protein B3 OS=Arabidopsis thaliana ... [more]
RTNLB_ARATH3.520e-6967.22Reticulon-like protein B2 OS=Arabidopsis thaliana ... [more]
RTNLD_ARATH6.004e-6967.22Reticulon-like protein B4 OS=Arabidopsis thaliana ... [more]
RTNLE_ARATH3.892e-6856.05Reticulon-like protein B5 OS=Arabidopsis thaliana ... [more]
RTNLF_ARATH2.361e-6563.89Reticulon-like protein B6 OS=Arabidopsis thaliana ... [more]
RTNLH_ARATH2.145e-5052.30Reticulon-like protein B8 OS=Arabidopsis thaliana ... [more]
RTNLG_ARATH1.065e-4952.57Reticulon-like protein B7 OS=Arabidopsis thaliana ... [more]
RTNLI_ARATH1.763e-3642.05Reticulon-like protein B9 OS=Arabidopsis thaliana ... [more]
RTNLL_ARATH2.466e-3037.13Reticulon-like protein B12 OS=Arabidopsis thaliana... [more]

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Properties
Property NameValue
Genbank descriptionCSAF-PNP1244M05 Flavedo Mature Citrus sinensis cDNA clone CSAF-PNP1244M05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR403367 ID=DR403367; Name=DR403367; organism=Citrus sinensis; type=EST; length=760bp
GGGGGTTCCCACCGAGTCTCGCTCTCTCTCGTTCTAGAGTCTAGTACATT
TTTCAATTCATTTTCATCGGCGCTTACTCGGCGGCAGAGATCTATGGCGG
AACATGCACCTGAGCACGAATCAGCCGACAAATCACTGGTGGAGAAGATC
ACGGATAAGATCCATGGCCACGACTCCTCGTCATCTGACTCCGATGACGA
CAAGCCGTCGTCTATTGACGCCTTTAAGTCCAAAGTATTCAGGCTCTTCG
GAAGAGAAAAACCTATTCACCATGTCCTCGGAGCTGGAAAACCTGCTGAT
ATTTTCCTATGGAGGAACAAGAAAATCTCTGCTGGTGTGCTAGGTGGAGC
CACTGCAATGTGGGTTCTCTTTGAGTTGCTGGAATACCATTTAATCACTT
TGGTCTGCCATATATCGATTCTCTCTCTGGCTGTTCTCTTCCTGTGGTCC
AATGCATCCACATTTATCAACAAATCACCGCCAGAGATTCCAGTTGTTAC
ACTTCCTGAGAAGTTTGTCCTTGAATTCGCCTCTGCCTTGAGGTATGAAA
TCAACCGAGCCTTGGCTGTCCTGCGGGAAATTGCGTCTGGAAGGGACTTG
AAGAAGTTTCTTGGTGTCATTGCTGGCTTGTGGCTTTTGTCTATTGTCGG
TAATTGGTGCAACTTCGTGACATTATTCTACATTGTATTTGTTTTGCTAC
ACACCGTGCCCGTGATTTATGAGAAGTACGAGGACAAGATTGATTCATTT
GGTGAGAAGG
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