DR403360

Overview
NameDR403360
Unique NameDR403360
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length773
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5299 contig Csv1_Contig5299:1..754. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DR403360 vs. ExPASy Swiss-Prot
Match: CNGC2_ARATH (Cyclic nucleotide-gated ion channel 2 OS=Arabidopsis thaliana GN=CNGC2 PE=1 SV=1)

HSP 1 Score: 363.614 bits (932), Expect = 6.691e-100
Identity = 173/239 (72.38%), Postives = 193/239 (80.75%), Query Frame = 2
Query:   32 VKVFLHAVMAKKRKMQLRCRDMEWWMXXXXXXXXXXXXXXHYERQRWATMGGEDEMELIKDLPEGLRRGIKRYLCLDLIKKVPLFHXXXXXXXXXXCDRVRPLVYSKDEKIIREGDPVPRMVFIVRGRIKRCQSLSKGMVATSVLEPGGFLGDELLSWCLRRPFIDRLPASSATFFCMESIEAFGLDAKNLRYITDHFRYKFANERLKRTARYCSSNWRTWAAVNIQFAWRRYRMRTRG 748
            ++VFLHAVMAKKRKMQ+RCRDMEWWM               +ERQRW  +GGEDE+ELI DLP GLRR IKRYLC DLI KVPLF           CDR +P V+SKDEKIIREGDPV RM+FI+RGR+KR QSLSKG++ATS LEPGG+LGDELLSWCLRRPF+DRLP SSATF C+E+IEAF L +++LRYITDHFRYKFANERLKRTARY SSNWRTWAAVNIQ AWRR R RTRG
Sbjct:  448 IQVFLHAVMAKKRKMQIRCRDMEWWMKRRQLPSRLRQRVRRFERQRWNALGGEDELELIHDLPPGLRRDIKRYLCFDLINKVPLFRGMDDLILDNICDRAKPRVFSKDEKIIREGDPVQRMIFIMRGRVKRIQSLSKGVLATSTLEPGGYLGDELLSWCLRRPFLDRLPPSSATFVCLENIEAFSLGSEDLRYITDHFRYKFANERLKRTARYYSSNWRTWAAVNIQMAWRRRRKRTRG 686          
BLAST of DR403360 vs. ExPASy Swiss-Prot
Match: CNGC4_ARATH (Cyclic nucleotide-gated ion channel 4 OS=Arabidopsis thaliana GN=CNGC4 PE=2 SV=2)

HSP 1 Score: 274.248 bits (700), Expect = 5.338e-73
Identity = 126/236 (53.39%), Postives = 168/236 (71.19%), Query Frame = 2
Query:   32 VKVFLHAVMAKKRKMQLRCRDMEWWMXXXXXXXXXXXXXXHYERQRWATMGGEDEMELIKDLPEGLRRGIKRYLCLDLIKKVPLFHXXXXXXXXXXCDRVRPLVYSKDEKIIREGDPVPRMVFIVRGRIKRCQSLSKGMVATSVLEPGGFLGDELLSWCLRRPFIDRLPASSATFFCMESIEAFGLDAKNLRYITDHFRYKFANERLKRTARYCSSNWRTWAAVNIQFAWRRYRMR 739
            +KVFLHA  +KK+ M L+ R++EWWM              +YERQRWA M G DE E++++LPEGLRR IK +LCLDL+++VPLF           CDRV+ L+++K E I +EGD V RM+F+VRG ++  Q L  G+ +  +L PG F GDELLSWCLRRPF++RLP SS+T   +E+ EAFGLDA++++Y+T HFRY F NE++KR+ARY S  WRTWAAV +Q AWRRY+ R
Sbjct:  413 IKVFLHATTSKKQAMHLKMRNIEWWMKKRHLPIGFRQRVRNYERQRWAAMRGVDECEMVQNLPEGLRRDIKYHLCLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGETIQKEGDAVQRMLFVVRGHLQSSQLLRDGVKSCCMLGPGNFSGDELLSWCLRRPFVERLPPSSSTLVTLETTEAFGLDAEDVKYVTQHFRYTFVNEKVKRSARYYSPGWRTWAAVAVQLAWRRYKHR 648          
BLAST of DR403360 vs. ExPASy Swiss-Prot
Match: CNGC9_ARATH (Putative cyclic nucleotide-gated ion channel 9 OS=Arabidopsis thaliana GN=CNGC9 PE=1 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 1.852e-41
Identity = 84/235 (35.74%), Postives = 136/235 (57.87%), Query Frame = 2
Query:   32 VKVFLHAVMAKKRKMQLRCRDMEWWMXXXXXXXXXXXXXXHYERQRWATMGGEDEMELIKDLPEGLRRGIKRYLCLDLIKKVPLFHXXXXXXXXXXCDRVRPLVYSKDEKIIREGDPVPRMVFIVRGRIKRCQSLS--KGMVATSVLEPGGFLGDELLSWCLRRPFIDRLPASSATFFCMESIEAFGLDAKNLRYITDHFRYKFANERLKRTARYCSSNWRTWAAVNIQFAWRRY 730
            ++ +L ++  +  +M+++ RD E WM               Y++ +W    G DE  L+++LP+ LRR IKR+LCL L+++VPLF           C+R++P +Y++   ++REGDPV  M+FI+RGR++   +     G    S+L+ G F G+ELL+W L       LP+S+ T   +  +EAF L A  L+++   FR +  + +++ T R+ S  WRTWAA+ IQ AWRRY
Sbjct:  430 MQTYLQSLTIRLEEMRVKRRDSEQWMHHRMLPPELRERVRRYDQYKWLETRGVDEENLVQNLPKDLRRDIKRHLCLALVRRVPLFENMDERLLDAICERLKPCLYTESSYLVREGDPVNEMLFIIRGRLESVTTDGGRSGFFNRSLLKEGDFCGEELLTWALDPKSGSNLPSSTRTAKALTEVEAFALIADELKFVASQFR-RLHSRQVQHTFRFYSQQWRTWAAIFIQAAWRRY 663          
BLAST of DR403360 vs. ExPASy Swiss-Prot
Match: CNGC7_ARATH (Putative cyclic nucleotide-gated ion channel 7 OS=Arabidopsis thaliana GN=CNGC7 PE=2 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 2.419e-41
Identity = 83/248 (33.47%), Postives = 141/248 (56.85%), Query Frame = 2
Query:   32 VKVFLHAVMAKKRKMQLRCRDMEWWMXXXXXXXXXXXXXXHYERQRWATMGGEDEMELIKDLPEGLRRGIKRYLCLDLIKKVPLFHXXXXXXXXXXCDRVRPLVYSKDEKIIREGDPVPRMVFIVRGRIKRCQSLS--KGMVATSVLEPGGFLGDELLSWCLRRPFIDRLPASSATFFCMESIEAFGLDAKNLRYITDHFRYKFANERLKRTARYCSSNWRTWAAVNIQFAWRRYRMRTRGPVISVTE 769
            ++ +L ++  +  +M+++ RD E WM               Y++ +W    G DE  +++ LP+ LRR IKR+LCL+L+++VPLF           C+R++P ++++   I+REGDPV  M+FI+RGR++   +     G     +L+ G F G+ELL+W L       LP+S+ T   +  +EAF L+A+ L+++   FR +  + ++++T R+ S  WRTWA+  IQ AWRRY  R    +  + E
Sbjct:  419 MQTYLQSLTVRLEEMRIKRRDSEQWMHHRSLPQNLRERVRRYDQYKWLETRGVDEENIVQSLPKDLRRDIKRHLCLNLVRRVPLFANMDERLLDAICERLKPSLFTESTYIVREGDPVNEMMFIIRGRLESVTTDGGRSGFFNRGLLKEGDFCGEELLTWALDPKAGSNLPSSTRTVKALTEVEAFALEAEELKFVASQFR-RLHSRQVQQTFRFYSQQWRTWASCFIQAAWRRYSRRKNAELRRIEE 665          
BLAST of DR403360 vs. ExPASy Swiss-Prot
Match: CNGC8_ARATH (Putative cyclic nucleotide-gated ion channel 8 OS=Arabidopsis thaliana GN=CNGC8 PE=2 SV=2)

HSP 1 Score: 168.703 bits (426), Expect = 3.159e-41
Identity = 83/238 (34.87%), Postives = 138/238 (57.98%), Query Frame = 2
Query:   32 VKVFLHAVMAKKRKMQLRCRDMEWWMXXXXXXXXXXXXXXHYERQRWATMGGEDEMELIKDLPEGLRRGIKRYLCLDLIKKVPLFHXXXXXXXXXXCDRVRPLVYSKDEKIIREGDPVPRMVFIVRGRIKRCQSLS--KGMVATSVLEPGGFLGDELLSWCLRRPFIDRLPASSATFFCMESIEAFGLDAKNLRYITDHFRYKFANERLKRTARYCSSNWRTWAAVNIQFAWRRYRMR 739
            ++ +L ++  +  +M+++ RD E WM               Y++ +W    G DE  +++ LP+ LRR IKR+LCL+L+++VPLF           C+R++P +Y++   I+REGDPV  M+FI+RGR++   +     G     +L+ G F G+ELL+W L       LP+S+ T   +  +EAF L+A+ L+++   FR +  + ++++T R+ S  WRTWAA  IQ AWRR+  R
Sbjct:  425 MQTYLQSLTVRLEEMRIKRRDSEQWMHHRSLPQNLRERVRRYDQYKWLETRGVDEENIVQSLPKDLRRDIKRHLCLNLVRRVPLFANMDERLLDAICERLKPSLYTESTYIVREGDPVNEMLFIIRGRLESVTTDGGRSGFFNRGLLKEGDFCGEELLTWALDPKAGSNLPSSTRTVKALTEVEAFALEAEELKFVASQFR-RLHSRQVQQTFRFYSQQWRTWAACFIQAAWRRHLRR 661          
BLAST of DR403360 vs. ExPASy Swiss-Prot
Match: CNGC1_ARATH (Cyclic nucleotide-gated ion channel 1 OS=Arabidopsis thaliana GN=CNGC1 PE=1 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 5.388e-41
Identity = 85/235 (36.17%), Postives = 133/235 (56.60%), Query Frame = 2
Query:   32 VKVFLHAVMAKKRKMQLRCRDMEWWMXXXXXXXXXXXXXXHYERQRWATMGGEDEMELIKDLPEGLRRGIKRYLCLDLIKKVPLFHXXXXXXXXXXCDRVRPLVYSKDEKIIREGDPVPRMVFIVRGRIKRCQSLS--KGMVATSVLEPGGFLGDELLSWCLRRPFIDRLPASSATFFCMESIEAFGLDAKNLRYITDHFRYKFANERLKRTARYCSSNWRTWAAVNIQFAWRRY 730
            ++ +L +   +  +M+++ RD E WM               YE+ +W    G DE  L+ +LP+ LRR IKR+LCL L+ +VP+F           CDR++P++Y+++  I+REGDPV  M+FI+RG++    +     G + +  L  G F G+ELL+W L       LP S+ T   +  +EAF L A +L+++   FR +  +++L+ T RY S  W+TWAA  IQ AWRRY
Sbjct:  403 MQTYLQSTTTRLEEMRVKRRDAEQWMSHRLLPENLRKRIRRYEQYKWQETRGVDEENLLSNLPKDLRRDIKRHLCLALLMRVPMFEKMDEQLLDALCDRLQPVLYTEESYIVREGDPVDEMLFIMRGKLLTITTNGGRTGFLNSEYLGAGDFCGEELLTWALDPHSSSNLPISTRTVRALMEVEAFALKADDLKFVASQFR-RLHSKQLRHTFRYYSQQWKTWAACFIQAAWRRY 636          
BLAST of DR403360 vs. ExPASy Swiss-Prot
Match: CNGC6_ARATH (Probable cyclic nucleotide-gated ion channel 6 OS=Arabidopsis thaliana GN=CNGC6 PE=1 SV=2)

HSP 1 Score: 167.548 bits (423), Expect = 7.037e-41
Identity = 84/240 (35.00%), Postives = 137/240 (57.08%), Query Frame = 2
Query:   32 VKVFLHAVMAKKRKMQLRCRDMEWWMXXXXXXXXXXXXXXHYERQRWATMGGEDEMELIKDLPEGLRRGIKRYLCLDLIKKVPLFHXXXXXXXXXXCDRVRPLVYSKDEKIIREGDPVPRMVFIVRGRIKRCQSLS--KGMVATSVLEPGGFLGDELLSWCLRRPFIDRLPASSATFFCMESIEAFGLDAKNLRYITDHFRYKFANERLKRTARYCSSNWRTWAAVNIQFAWRRYRMRTR 745
            ++ +L ++  +  +M+++ RD E WM               Y++ +W    G DE  L+++LP+ LRR IKR+LCL L+++VPLF           C+R++P ++++   ++REGDPV  M+FI+RGR++   +     G    S+L+ G F GDELL+W L       LP+S+ T   +  +EAF L A  L+++   FR +  + +++ T R+ S  WRTWAA  +Q AWRRY  R +
Sbjct:  431 MQTYLQSLTIRLEEMRVKRRDSEQWMHHRMLPPELRERVRRYDQYKWLETRGVDEENLVQNLPKDLRRDIKRHLCLALVRRVPLFENMDERLLDAICERLKPCLFTEKSYLVREGDPVNEMLFIIRGRLESVTTDGGRSGFYNRSLLKEGDFCGDELLTWALDPKSGSNLPSSTRTVKALTEVEAFALIADELKFVASQFR-RLHSRQVQHTFRFYSQQWRTWAACFMQAAWRRYIKRKK 669          
BLAST of DR403360 vs. ExPASy Swiss-Prot
Match: CNG10_ARATH (Probable cyclic nucleotide-gated ion channel 10 OS=Arabidopsis thaliana GN=CNGC10 PE=2 SV=2)

HSP 1 Score: 167.162 bits (422), Expect = 9.191e-41
Identity = 87/235 (37.02%), Postives = 131/235 (55.74%), Query Frame = 2
Query:   41 FLHAVMAKKRKMQLRCRDMEWWMXXXXXXXXXXXXXXHYERQRWATMGGEDEMELIKDLPEGLRRGIKRYLCLDLIKKVPLFHXXXXXXXXXXCDRVRPLVYSKDEKIIREGDPVPRMVFIVRGRIKRCQSLS--KGMVATSVLEPGGFLGDELLSWCLRRPFIDRLPASSATFFCMESIEAFGLDAKNLRYITDHFRYKFANERLKRTARYCSSNWRTWAAVNIQFAWRRYRMR 739
            +L +   ++ +M++R RD E WM               YE+ RW    G +E  L+++LP+ LRR IKR+LCLDL+KKVPLF           CDR+RP++Y+++  +IREGDPV  M+F++RGR+    +     G      L+   F G++LL W L        P S+ T   +  +EAF L A++L+ +   FR +  +++L+ T R+ S  WRTW+   IQ AWRRY  R
Sbjct:  393 YLESTTVREEEMRVRKRDAEQWMSHRMLPEDLRKRIRRYEQYRWQETRGVEEETLLRNLPKDLRRDIKRHLCLDLLKKVPLFEIMDEQLLDAVCDRLRPVLYTENSYVIREGDPVGEMLFVMRGRLVSATTNGGRSGFFNAVNLKASDFCGEDLLPWALDPQSSSHFPISTRTVQALTEVEAFALTAEDLKSVASQFR-RLHSKQLQHTFRFYSVQWRTWSVSFIQAAWRRYCRR 626          
BLAST of DR403360 vs. ExPASy Swiss-Prot
Match: CNG14_ARATH (Probable cyclic nucleotide-gated ion channel 14 OS=Arabidopsis thaliana GN=CNGC14 PE=2 SV=2)

HSP 1 Score: 165.236 bits (417), Expect = 3.493e-40
Identity = 84/248 (33.87%), Postives = 137/248 (55.24%), Query Frame = 2
Query:   32 VKVFLHAVMAKKRKMQLRCRDMEWWMXXXXXXXXXXXXXXHYERQRWATMGGEDEMELIKDLPEGLRRGIKRYLCLDLIKKVPLFHXXXXXXXXXXCDRVRPLVYSKDEKIIREGDPVPRMVFIVRGRIKRCQSLS--KGMVATSVLEPGGFLGDELLSWCLRRPFIDRLPASSATFFCMESIEAFGLDAKNLRYITDHFRYKFANERLKRTARYCSSNWRTWAAVNIQFAWRRYRMRTRGPVISVTE 769
            ++ +L ++  +  + +L+ RD E WM               + + +W    G DE  ++  LP  LRR I+R+LCLDL+++VPLF           C+R+   + ++   I+REGDPV  M+FI+RG+++   +     G   +  L PG F G+ELL+W L       LP+S+ T   +E +EAF L A +L+++ + FR +  +++L+ T RY S  WRTWAA  +Q AWRRY+ +     +S+ E
Sbjct:  398 MQTYLQSITVRLEEWRLKRRDTEEWMGHRLLPQNLRERVRRFVQYKWLATRGVDEETILHSLPADLRRDIQRHLCLDLVRRVPLFAQMDDQLLDAICERLASSLSTQGNYIVREGDPVTEMLFIIRGKLESSTTNGGRTGFFNSITLRPGDFCGEELLAWALLPKSTVNLPSSTRTVRALEEVEAFALQAGDLKFVANQFR-RLHSKKLQHTFRYYSHQWRTWAACFVQVAWRRYKRKKLAKSLSLAE 644          
BLAST of DR403360 vs. ExPASy Swiss-Prot
Match: CNG13_ARATH (Putative cyclic nucleotide-gated ion channel 13 OS=Arabidopsis thaliana GN=CNGC13 PE=2 SV=2)

HSP 1 Score: 163.31 bits (412), Expect = 1.327e-39
Identity = 83/235 (35.32%), Postives = 130/235 (55.32%), Query Frame = 2
Query:   41 FLHAVMAKKRKMQLRCRDMEWWMXXXXXXXXXXXXXXHYERQRWATMGGEDEMELIKDLPEGLRRGIKRYLCLDLIKKVPLFHXXXXXXXXXXCDRVRPLVYSKDEKIIREGDPVPRMVFIVRGRIKRCQSLS--KGMVATSVLEPGGFLGDELLSWCLRRPFIDRLPASSATFFCMESIEAFGLDAKNLRYITDHFRYKFANERLKRTARYCSSNWRTWAAVNIQFAWRRYRMR 739
            +L +   ++ +M++R RD E WM               YE+ +W    G +E  L+++LP+ LRR IKR+ CLDL+KKVPLF           CD+++P++Y+++   IREGDPV  M+F++RG++    +     G      L+P  F G++LL+W L        P S+ T   +  +EAF L A +L+ +   FR +  +++L+ T R+ S  WRTW A  IQ AWRR+  R
Sbjct:  394 YLESTTVREEEMRVRKRDAEQWMSHRMLPDDLRKRIRRYEQYKWQETRGVEEENLLRNLPKDLRRDIKRHFCLDLLKKVPLFEIMDEQLLDAVCDKLKPVLYTENSYAIREGDPVEEMLFVMRGKLMSATTNGGRTGFFNAVYLKPSDFCGEDLLTWALDPQSSSHFPISTRTVQALTEVEAFALAADDLKLVASQFR-RLHSKQLQHTFRFYSVQWRTWGASFIQAAWRRHCRR 627          
The following BLAST results are available for this feature:
BLAST of DR403360 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 20
Match NameE-valueIdentityDescription
CNGC2_ARATH6.691e-10072.38Cyclic nucleotide-gated ion channel 2 OS=Arabidops... [more]
CNGC4_ARATH5.338e-7353.39Cyclic nucleotide-gated ion channel 4 OS=Arabidops... [more]
CNGC9_ARATH1.852e-4135.74Putative cyclic nucleotide-gated ion channel 9 OS=... [more]
CNGC7_ARATH2.419e-4133.47Putative cyclic nucleotide-gated ion channel 7 OS=... [more]
CNGC8_ARATH3.159e-4134.87Putative cyclic nucleotide-gated ion channel 8 OS=... [more]
CNGC1_ARATH5.388e-4136.17Cyclic nucleotide-gated ion channel 1 OS=Arabidops... [more]
CNGC6_ARATH7.037e-4135.00Probable cyclic nucleotide-gated ion channel 6 OS=... [more]
CNG10_ARATH9.191e-4137.02Probable cyclic nucleotide-gated ion channel 10 OS... [more]
CNG14_ARATH3.493e-4033.87Probable cyclic nucleotide-gated ion channel 14 OS... [more]
CNG13_ARATH1.327e-3935.32Putative cyclic nucleotide-gated ion channel 13 OS... [more]

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Properties
Property NameValue
Genbank descriptionCSAF-PNP1244L17 Flavedo Mature Citrus sinensis cDNA clone CSAF-PNP1244L17 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR403360 ID=DR403360; Name=DR403360; organism=Citrus sinensis; type=EST; length=773bp
GGGGACTCTAATAAGTTAAATTGCTGTTGCTGTGAAGGTGTTTTTGCATG
CTGTAATGGCAAAAAAGCGAAAGATGCAGCTGAGGTGCCGAGACATGGAA
TGGTGGATGAGACGGAGGCAGCTGCCGTCGCGTTTGAGACAGAGAGTTCG
CCATTATGAGCGTCAAAGATGGGCAACAATGGGAGGAGAAGATGAGATGG
AACTGATCAAAGACTTGCCGGAAGGGCTGAGGCGTGGCATTAAACGGTAT
CTCTGCCTTGATCTTATAAAAAAGGTACCTTTGTTCCACAACCTGGATGA
TCTCATTCTTGACAACATATGTGACAGAGTTAGGCCCCTTGTATACTCTA
AAGATGAAAAGATAATCAGAGAAGGGGATCCTGTGCCAAGAATGGTGTTC
ATTGTTCGTGGACGGATTAAACGTTGCCAAAGCCTAAGCAAAGGCATGGT
AGCAACAAGTGTGCTTGAACCAGGAGGGTTTCTGGGTGATGAGTTGCTTT
CCTGGTGCCTGCGCCGCCCGTTTATCGATCGGCTGCCAGCATCATCAGCA
ACATTTTTTTGTATGGAATCCATAGAAGCATTTGGGTTAGATGCAAAGAA
TCTCCGATACATCACAGATCATTTCCGGTACAAATTTGCCAACGAAAGGC
TGAAGAGAACCGCGAGATATTGTTCATCAAATTGGAGGACATGGGCGGCT
GTGAATATTCAATTTGCTTGGAGAAGATACAGGATGAGGACTAGAGGTCC
TGTGATTTCTGTAACTGAACATG
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