DR403356

Overview
NameDR403356
Unique NameDR403356
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length696
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DR403356_ssr168 microsatellite DR403356_ssr168:168..179. BLAST: Citrus ESTs to Prunus persica proteins V1
DR403356_ssr211 microsatellite DR403356_ssr211:211..222. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig11062 contig Csv1_Contig11062:117..812. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of DR403356 vs. ExPASy Swiss-Prot
Match: FTRV_SPIOL (Ferredoxin-thioredoxin reductase, variable chain, chloroplastic OS=Spinacia oleracea GN=FTRV PE=1 SV=2)

HSP 1 Score: 82.4185 bits (202), Expect = 2.495e-15
Identity = 45/91 (49.45%), Postives = 57/91 (62.64%), Query Frame = 2 
Query:  419 ISCEVAVKSNNSTASVGLEXXXXXXXXXXDDGFDESKIGAKVKVKVPLKVYHVPRVPEHDLS-GMEGVLKQYVGVWKGKKISANMPYKVAF 688
            I CEVA+KS++ST                    +  K+G KVKVK PLKVYHVP++PE +L+  M GV+KQYVG WKGK IS N P+KV +
Sbjct:   60 ICCEVALKSDSSTGFDSSSSSPPEEDEELKKNLE--KVGCKVKVKSPLKVYHVPKLPEVELTPDMVGVIKQYVGFWKGKYISPNYPFKVEY 148
[Close]
BLAST of DR403356 vs. ExPASy Swiss-Prot
Match: FTRV_MAIZE (Ferredoxin-thioredoxin reductase, variable chain OS=Zea mays PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.145e-14
Identity = 33/54 (61.11%), Postives = 44/54 (81.48%), Query Frame = 2 
Query:  527 KIGAKVKVKVPLKVYHVPRVPEHDLSGMEGVLKQYVGVWKGKKISANMPYKVAF 688
            KIG +V+V  PL+VYHV + P+ D+ GMEGV+KQYV VWKGK+++AN P+KV F
Sbjct:   17 KIGRRVRVTAPLRVYHVLKAPDLDIQGMEGVVKQYVCVWKGKRVTANFPFKVEF 70
The following BLAST results are available for this feature:
BLAST of DR403356 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
FTRV_SPIOL2.495e-1549.45Ferredoxin-thioredoxin reductase, variable chain, ... [more]
FTRV_MAIZE6.145e-1461.11Ferredoxin-thioredoxin reductase, variable chain O... [more]
back to top
Properties
Property NameValue
Genbank descriptionCSAF-PNP1244L10 Flavedo Mature Citrus sinensis cDNA clone CSAF-PNP1244L10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR403356 ID=DR403356; Name=DR403356; organism=Citrus sinensis; type=EST; length=696bp
GGGGGTTCTGTGAGATATTTATCACAACTTTGACGAGGGAGGAGAGGATG
TATGCGCTCTAGAGTGTTATTCATTCGACACGTGTGCAATAGAGACGAAA
GTCCGTTGCCATCCTCTTAGCTCGCCTTAGCCACTGAGGCCTGAGATAGT
GGTTCAATAGAAAAATCAATAATAATAATAAAAAAAAGAGATTAAAGGTT
GGGTAATATCATTATTATTATTATATGATTATTTTGTGAGAATTAGCGGA
CGAGTGAAAAGATAGATACACAGAGAAATCATGACTAGTACAAGTTTTGC
TTTGTCCTCGGCTACTTCTTCGCTGATAAATCGACGGCCACTTACGAATG
CGTTTGTCTCAGTTTCTTCATTTTCAGCTGCCAATTGTAGTGACAATGTT
AATGTTAACAAAAGAAGAATCTCCTGTGAAGTAGCTGTAAAATCCAACAA
TTCAACGGCATCCGTAGGACTAGAGAGCAGTCCATCTTCATCAGCATCAG
CGTCGGATGATGGCTTTGATGAGTCTAAGATTGGTGCGAAGGTTAAGGTG
AAGGTGCCGTTGAAGGTTTACCATGTTCCTAGGGTTCCGGAGCATGATCT
GTCTGGCATGGAAGGTGTGCTCAAGCAATACGTCGGCGTTTGGAAAGGAA
AGAAAATCTCAGCCAATATGCCTTACAAGGTAGCGTTTGTTACTGA
back to top