DR403354

Overview
NameDR403354
Unique NameDR403354
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length610
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4274 contig Csv1_Contig4274:563..1172. BLAST: Citrus Unigene V1 Contigs to TAIR9
Homology
BLAST of DR403354 vs. ExPASy Swiss-Prot
Match: PSBH_CITSI (Photosystem II reaction center protein H OS=Citrus sinensis GN=psbH PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 3.558e-33
Identity = 72/73 (98.63%), Postives = 72/73 (98.63%), Query Frame = 1
Query:   52 MATQTVEGSSRARPKRTSAGGLLKPLNSEYGKVAPGWGTTPLMGVAMALFAVFLSII*EIYNSSVLLDGISLN 270
            MATQTVEGSSRARPKRTSAGGLLKPLNSEYGKVAPGWGTTPLMGVAMALFAVFLSII EIYNSSVLLDGISLN
Sbjct:    1 MATQTVEGSSRARPKRTSAGGLLKPLNSEYGKVAPGWGTTPLMGVAMALFAVFLSIILEIYNSSVLLDGISLN 73          
BLAST of DR403354 vs. ExPASy Swiss-Prot
Match: PSBH_DRIGR (Photosystem II reaction center protein H OS=Drimys granadensis GN=psbH PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 4.809e-30
Identity = 64/73 (87.67%), Postives = 70/73 (95.89%), Query Frame = 1
Query:   52 MATQTVEGSSRARPKRTSAGGLLKPLNSEYGKVAPGWGTTPLMGVAMALFAVFLSII*EIYNSSVLLDGISLN 270
            MATQTVEGSSR+RP+RT+ G LLKPLNSEYGKVAPGWGTTPLMGVAMALFA+FLSII EIYNSSVLLDGIS++
Sbjct:    1 MATQTVEGSSRSRPRRTTTGNLLKPLNSEYGKVAPGWGTTPLMGVAMALFAIFLSIILEIYNSSVLLDGISMS 73          
BLAST of DR403354 vs. ExPASy Swiss-Prot
Match: PSBH_VITVI (Photosystem II reaction center protein H OS=Vitis vinifera GN=psbH PE=3 SV=2)

HSP 1 Score: 130.183 bits (326), Expect = 8.203e-30
Identity = 66/73 (90.41%), Postives = 69/73 (94.52%), Query Frame = 1
Query:   52 MATQTVEGSSRARPKRTSAGGLLKPLNSEYGKVAPGWGTTPLMGVAMALFAVFLSII*EIYNSSVLLDGISLN 270
            MAT+TVEGSSR+RPK T+ G LLKPLNSEYGKVAPGWGTTPLMGVAMALFAVFLSII EIYNSSVLLDGISLN
Sbjct:    1 MATKTVEGSSRSRPKPTTVGELLKPLNSEYGKVAPGWGTTPLMGVAMALFAVFLSIILEIYNSSVLLDGISLN 73          
BLAST of DR403354 vs. ExPASy Swiss-Prot
Match: PSBH_OENEH (Photosystem II reaction center protein H OS=Oenothera elata subsp. hookeri GN=psbH PE=3 SV=2)

HSP 1 Score: 130.183 bits (326), Expect = 8.203e-30
Identity = 65/73 (89.04%), Postives = 68/73 (93.15%), Query Frame = 1
Query:   52 MATQTVEGSSRARPKRTSAGGLLKPLNSEYGKVAPGWGTTPLMGVAMALFAVFLSII*EIYNSSVLLDGISLN 270
            MATQT E SSRARPK+T  GGLLKPLNSEYGKVAPGWGTTPLMG+AMALFAVFLSII EIYNSSVLLDGIS+N
Sbjct:    1 MATQTAEESSRARPKKTGLGGLLKPLNSEYGKVAPGWGTTPLMGLAMALFAVFLSIILEIYNSSVLLDGISMN 73          
BLAST of DR403354 vs. ExPASy Swiss-Prot
Match: PSBH_OENAR (Photosystem II reaction center protein H OS=Oenothera argillicola GN=psbH PE=3 SV=2)

HSP 1 Score: 130.183 bits (326), Expect = 8.203e-30
Identity = 65/73 (89.04%), Postives = 68/73 (93.15%), Query Frame = 1
Query:   52 MATQTVEGSSRARPKRTSAGGLLKPLNSEYGKVAPGWGTTPLMGVAMALFAVFLSII*EIYNSSVLLDGISLN 270
            MATQT E SSRARPK+T  GGLLKPLNSEYGKVAPGWGTTPLMG+AMALFAVFLSII EIYNSSVLLDGIS+N
Sbjct:    1 MATQTAEESSRARPKKTGLGGLLKPLNSEYGKVAPGWGTTPLMGLAMALFAVFLSIILEIYNSSVLLDGISMN 73          
BLAST of DR403354 vs. ExPASy Swiss-Prot
Match: PSBH_LOTJA (Photosystem II reaction center protein H OS=Lotus japonicus GN=psbH PE=3 SV=3)

HSP 1 Score: 130.183 bits (326), Expect = 8.203e-30
Identity = 63/73 (86.30%), Postives = 69/73 (94.52%), Query Frame = 1
Query:   52 MATQTVEGSSRARPKRTSAGGLLKPLNSEYGKVAPGWGTTPLMGVAMALFAVFLSII*EIYNSSVLLDGISLN 270
            MATQTVE SSRARP++TS G LLKPLNSEYGKVAPGWGTTPLMG+AMALFA+FLSII EIYNSS+LLDGIS+N
Sbjct:    1 MATQTVEDSSRARPRQTSVGSLLKPLNSEYGKVAPGWGTTPLMGIAMALFAIFLSIILEIYNSSILLDGISMN 73          
BLAST of DR403354 vs. ExPASy Swiss-Prot
Match: PSBH_SPIOL (Photosystem II reaction center protein H OS=Spinacia oleracea GN=psbH PE=1 SV=4)

HSP 1 Score: 129.413 bits (324), Expect = 1.399e-29
Identity = 65/73 (89.04%), Postives = 68/73 (93.15%), Query Frame = 1
Query:   52 MATQTVEGSSRARPKRTSAGGLLKPLNSEYGKVAPGWGTTPLMGVAMALFAVFLSII*EIYNSSVLLDGISLN 270
            MATQTVE SSR+RPK T+ G LLKPLNSEYGKVAPGWGTTPLMGVAMALFAVFLSII EIYNSSVLLDGIS+N
Sbjct:    1 MATQTVESSSRSRPKPTTVGALLKPLNSEYGKVAPGWGTTPLMGVAMALFAVFLSIILEIYNSSVLLDGISMN 73          
BLAST of DR403354 vs. ExPASy Swiss-Prot
Match: PSBH_EUCGG (Photosystem II reaction center protein H OS=Eucalyptus globulus subsp. globulus GN=psbH PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 1.827e-29
Identity = 65/73 (89.04%), Postives = 68/73 (93.15%), Query Frame = 1
Query:   52 MATQTVEGSSRARPKRTSAGGLLKPLNSEYGKVAPGWGTTPLMGVAMALFAVFLSII*EIYNSSVLLDGISLN 270
            MATQTVEGSSR+ P+RT  G LLKPLNSEYGKVAPGWGTTPLMGVAMALFAVFLSII EIYNSSVLLDGIS+N
Sbjct:    1 MATQTVEGSSRSGPRRTIVGDLLKPLNSEYGKVAPGWGTTPLMGVAMALFAVFLSIILEIYNSSVLLDGISMN 73          
BLAST of DR403354 vs. ExPASy Swiss-Prot
Match: PSBH_TOBAC (Photosystem II reaction center protein H OS=Nicotiana tabacum GN=psbH PE=3 SV=2)

HSP 1 Score: 127.872 bits (320), Expect = 4.071e-29
Identity = 64/73 (87.67%), Postives = 68/73 (93.15%), Query Frame = 1
Query:   52 MATQTVEGSSRARPKRTSAGGLLKPLNSEYGKVAPGWGTTPLMGVAMALFAVFLSII*EIYNSSVLLDGISLN 270
            MATQTVE SSR+ P+RT+ G LLKPLNSEYGKVAPGWGTTPLMGVAMALFAVFLSII EIYNSSVLLDGIS+N
Sbjct:    1 MATQTVENSSRSGPRRTAVGDLLKPLNSEYGKVAPGWGTTPLMGVAMALFAVFLSIILEIYNSSVLLDGISMN 73          
BLAST of DR403354 vs. ExPASy Swiss-Prot
Match: PSBH_SOLTU (Photosystem II reaction center protein H OS=Solanum tuberosum GN=psbH PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 4.071e-29
Identity = 64/73 (87.67%), Postives = 68/73 (93.15%), Query Frame = 1
Query:   52 MATQTVEGSSRARPKRTSAGGLLKPLNSEYGKVAPGWGTTPLMGVAMALFAVFLSII*EIYNSSVLLDGISLN 270
            MATQTVE SSR+ P+RT+ G LLKPLNSEYGKVAPGWGTTPLMGVAMALFAVFLSII EIYNSSVLLDGIS+N
Sbjct:    1 MATQTVENSSRSGPRRTAVGDLLKPLNSEYGKVAPGWGTTPLMGVAMALFAVFLSIILEIYNSSVLLDGISMN 73          
The following BLAST results are available for this feature:
BLAST of DR403354 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 111
Match NameE-valueIdentityDescription
PSBH_CITSI3.558e-3398.63Photosystem II reaction center protein H OS=Citrus... [more]
PSBH_DRIGR4.809e-3087.67Photosystem II reaction center protein H OS=Drimys... [more]
PSBH_VITVI8.203e-3090.41Photosystem II reaction center protein H OS=Vitis ... [more]
PSBH_OENEH8.203e-3089.04Photosystem II reaction center protein H OS=Oenoth... [more]
PSBH_OENAR8.203e-3089.04Photosystem II reaction center protein H OS=Oenoth... [more]
PSBH_LOTJA8.203e-3086.30Photosystem II reaction center protein H OS=Lotus ... [more]
PSBH_SPIOL1.399e-2989.04Photosystem II reaction center protein H OS=Spinac... [more]
PSBH_EUCGG1.827e-2989.04Photosystem II reaction center protein H OS=Eucaly... [more]
PSBH_TOBAC4.071e-2987.67Photosystem II reaction center protein H OS=Nicoti... [more]
PSBH_SOLTU4.071e-2987.67Photosystem II reaction center protein H OS=Solanu... [more]

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Properties
Property NameValue
Genbank descriptionCSAF-PNP1244L08 Flavedo Mature Citrus sinensis cDNA clone CSAF-PNP1244L08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR403354 ID=DR403354; Name=DR403354; organism=Citrus sinensis; type=EST; length=610bp
GCCGGGGGGTATACAAAGTCAACAGATCNNNATCNNNNCGAAATAGGATT
TATGGCTACACAAACAGTTGAGGGTAGTTCTAGAGCTCGTCCAAAAAGAA
CTTCTGCAGGGGGGTTGTTGAAACCCTTGAATTCGGAATATGGTAAAGTT
GCTCCTGGATGGGGAACTACTCCTTTGATGGGAGTCGCAATGGCTTTATT
TGCGGTATTCCTATCTATTATTTAGGAGATTTATAATTCGTCCGTTTTAC
TGGACGGAATTTCACTGAATTAGAATGAAATTTACAAGAATCACAAAATA
TTACCTTTTAAATAAGCATTTAGGTATCGGATTTTGATTTTCGTTGATTG
GTAGTTCGACCGCGAATTTTTTATTTCTGTATTTCCGGAATATGAGTGTG
CGACTTGTTCGAATTGATCCTATTGATAGTACAGAGCATAGATCTGTCGT
CTTGATCGAGATGGCTTTACTCCGTCGGATATTCATTCGAGTATCTGGAG
CACGGAATATATGAAATAGATCACGAAGTACTCGAACTATGATTCATACT
TAATATTCAGACCCCTTGGCCGGATTCAAAAAATTTTTCCGGAAAAAAAA
AAAAAAAAAA
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