DR403340

Overview
NameDR403340
Unique NameDR403340
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length680
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DR403340_ssr100 microsatellite DR403340_ssr100:100..111. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig6086 contig Csv1_Contig6086:1..680. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DR403340 vs. ExPASy Swiss-Prot
Match: TRXL6_ARATH (Thioredoxin-like 6, chloroplastic OS=Arabidopsis thaliana GN=At4g29670 PE=2 SV=2)

HSP 1 Score: 222.246 bits (565), Expect = 1.932e-57
Identity = 103/143 (72.03%), Postives = 122/143 (85.31%), Query Frame = 2
Query:  248 PRKRLISFKVHATLAETNQPKWWEKNAPNMIDIHSTQEFLEALSQAGDRLVIVEFYGTWCASCRALFPKLCRTAGEHPEIVFLKVNFDENKPMCKSLNVKVLPYFHFYRGAHGQLESFSCSLAKFQKIKEAIALHNTDRCSIG 676
            P+ +++  KV   +AET  PKWWE+NAPNM+DIHST+EFL ALS AG+RLVIVEFYGTWCASCRALFPKLC+TA EHP+IVFLKVNFDENKPMCKSLNV+VLP+FHFYRGA GQLESFSCSLA   K+K+AI++    +  +G
Sbjct:   76 PKSQVVRVKVDENVAETEPPKWWERNAPNMVDIHSTEEFLSALSGAGERLVIVEFYGTWCASCRALFPKLCKTAVEHPDIVFLKVNFDENKPMCKSLNVRVLPFFHFYRGADGQLESFSCSLA---KVKKAISVSPFPQLELG 215          
BLAST of DR403340 vs. ExPASy Swiss-Prot
Match: TRXL2_ARATH (Thioredoxin-like 2, chloroplastic OS=Arabidopsis thaliana GN=At4g26160 PE=2 SV=2)

HSP 1 Score: 219.55 bits (558), Expect = 1.252e-56
Identity = 110/173 (63.58%), Postives = 125/173 (72.25%), Query Frame = 2
Query:  173 ISDNKRIYPLXXXXXXXGLARFSL------TPRKRLISFKVHATLAETNQPKWWEKNA-PNMIDIHSTQEFLEALSQAGDRLVIVEFYGTWCASCRALFPKLCRTAGEHPEIVFLKVNFDENKPMCKSLNVKVLPYFHFYRGAHGQLESFSCSLAKFQKIKEAIALHNTDRCS 670
            +S   R Y L        L   SL      + R + +S KV A  AET QPKWWE+ A PNMIDI S ++FL AL  AGDRLVIV+FYGTWC SCRA+FPKLC+TA EHP I+FLKVNFDENK +CKSLNVKVLPYFHFYRGA GQ+ESFSCSLAKFQK++EAI  HN    S
Sbjct:   34 LSSCNRFYGLSSSSSSSSLTTSSLIGNLVFSSRNQSLSVKVQALAAETEQPKWWERKAGPNMIDITSAEQFLNALKDAGDRLVIVDFYGTWCGSCRAMFPKLCKTAKEHPNILFLKVNFDENKSLCKSLNVKVLPYFHFYRGADGQVESFSCSLAKFQKLREAIERHNVGSIS 206          
BLAST of DR403340 vs. ExPASy Swiss-Prot
Match: TRXL1_ARATH (Thioredoxin-like 1 OS=Arabidopsis thaliana GN=At1g08570 PE=2 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 3.920e-34
Identity = 66/143 (46.15%), Postives = 97/143 (67.83%), Query Frame = 2
Query:  254 KRLISFKVHATLAETNQPKWWEKNAP-NMIDIHSTQEFLEALSQAGDRLVIVEFYGTWCASCRALFPKLCRTAGEHPEIVFLKVNFDENKPMCKSLNVKVLPYFHFYRGAHGQLESFSCSLAKFQKIKEAIALHNTDRCSIGP 679
            +R  +     TL      KWWEK    NM +I S QE +++L+ AGD+LV+V+F+   C  C+AL PK+C+ A  +P++ FL+VN++E+K MC SL V VLP+F FYRG+ G++ SFSC+ A  +K ++A+A H  DRCS+GP
Sbjct:   71 RRSSAITAQTTLRIGTAQKWWEKGLKDNMREISSAQELVDSLTNAGDKLVVVDFFSPGCGGCKALHPKICQFAEMNPDVQFLQVNYEEHKSMCYSLGVHVLPFFRFYRGSQGRVCSFSCTNATIKKFRDALAKHGPDRCSLGP 213          
BLAST of DR403340 vs. ExPASy Swiss-Prot
Match: TRXL7_ARATH (Thioredoxin-like 7, chloroplastic OS=Arabidopsis thaliana GN=At2g33270 PE=2 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 5.660e-33
Identity = 64/147 (43.54%), Postives = 101/147 (68.71%), Query Frame = 2
Query:  242 LTPRKRLISF-KVHATLAETNQPKWWEKNA-PNMIDIHSTQEFLEALSQAGDRLVIVEFYGTWCASCRALFPKLCRTAGEHPEIVFLKVNFDENKPMCKSLNVKVLPYFHFYRGAHGQLESFSCSLAKFQKIKEAIALHNTDRCSIG 676
            L  +K++ +F +   +L      KWWEK   PNM  + S Q+ + +L  AGD+LV+V+F+   C  C+AL PK+C+ A ++PE+ FL+VN++E++ +C+SLN+ VLP+F FYRG+ G++ SFSC+ A  +K KEA+  H  ++CSIG
Sbjct:   62 LFSKKKIPAFVRCQTSLGIGRNQKWWEKELKPNMKSVTSPQDLVVSLRNAGDKLVVVDFFSPSCGGCKALHPKICKIAEKNPEVEFLQVNYEEHRSLCQSLNIHVLPFFRFYRGSSGRVCSFSCTNATIRKFKEALEKHGREQCSIG 208          
BLAST of DR403340 vs. ExPASy Swiss-Prot
Match: TRXL3_ARATH (Thioredoxin-like 3, chloroplastic OS=Arabidopsis thaliana GN=At5g61440 PE=2 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.394e-31
Identity = 59/124 (47.58%), Postives = 88/124 (70.97%), Query Frame = 2
Query:  308 KWWEKNAP-NMIDIHSTQEFLEALSQAGDRLVIVEFYGTWCASCRALFPKLCRTAGEHPEIVFLKVNFDENKPMCKSLNVKVLPYFHFYRGAHGQLESFSCSLAKFQKIKEAIALHNTDRCSIG 676
            +WWEK+   NM++I S    +++L  AGDRLV+++FY   C  C++L PK+C+ A  +P ++FLKVN +E + MC  LNV VLP+F FYRGA G++ SFSC++A   K K+A+  H ++RCS+G
Sbjct:   77 RWWEKSTNHNMLEIQSANHLVDSLLNAGDRLVVLDFYSPGCGGCKSLHPKICQLAETNPNVMFLKVNQEELRTMCHGLNVHVLPFFKFYRGAEGKVCSFSCTIATINKFKKALDKHGSERCSLG 200          
BLAST of DR403340 vs. ExPASy Swiss-Prot
Match: THIO_GEOCY (Thioredoxin OS=Geodia cydonium GN=THIO PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.603e-11
Identity = 27/72 (37.50%), Postives = 46/72 (63.89%), Query Frame = 2
Query:  359 EFLEALSQAGDRLVIVEFYGTWCASCRALFPKLCRTAGEHPEIVFLKVNFDENKPMCKSLNVKVLPYFHFYR 574
            +F +AL  AGD+LV+++F  +WC  C+ + PK    A E P+++F KV+ DEN    ++  ++ +P F FY+
Sbjct:   10 DFDQALKDAGDKLVVIDFTASWCGPCQRIAPKYVEMAKEFPDVIFYKVDVDENDETAEAEKIQAMPTFKFYK 81          
The following BLAST results are available for this feature:
BLAST of DR403340 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
TRXL6_ARATH1.932e-5772.03Thioredoxin-like 6, chloroplastic OS=Arabidopsis t... [more]
TRXL2_ARATH1.252e-5663.58Thioredoxin-like 2, chloroplastic OS=Arabidopsis t... [more]
TRXL1_ARATH3.920e-3446.15Thioredoxin-like 1 OS=Arabidopsis thaliana GN=At1g... [more]
TRXL7_ARATH5.660e-3343.54Thioredoxin-like 7, chloroplastic OS=Arabidopsis t... [more]
TRXL3_ARATH1.394e-3147.58Thioredoxin-like 3, chloroplastic OS=Arabidopsis t... [more]
THIO_GEOCY1.603e-1137.50Thioredoxin OS=Geodia cydonium GN=THIO PE=3 SV=1[more]
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Properties
Property NameValue
Genbank descriptionCSAF-PNP1244K13 Flavedo Mature Citrus sinensis cDNA clone CSAF-PNP1244K13 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR403340 ID=DR403340; Name=DR403340; organism=Citrus sinensis; type=EST; length=680bp
GGGATTGTCATTTCTCTTTAAATTCAAAATTTAATTCTATCTCGGCAACC
CGTAAATGGCAGATGTTATAAGGGCATGTTCATTTCAGTCACTTCGTTTT
TCTTCTTCTTCAGTGCTCACCTCATTTTCCTCAACGTCGGGTTGCCTTCA
ACTGGGTCTGCCTCCTAATCAAATTTCAGATAATAAGAGAATCTATCCTC
TTGCTGCTGCTTCTTCTTCTGCTGGCCTTGCTCGCTTTTCATTGACACCC
AGGAAGCGTTTAATCTCATTTAAGGTACATGCAACCCTTGCTGAAACCAA
CCAGCCAAAATGGTGGGAAAAAAACGCACCAAATATGATTGACATTCATT
CTACACAGGAATTTTTAGAAGCCCTGAGTCAAGCTGGTGATAGATTAGTC
ATTGTTGAATTTTATGGAACCTGGTGTGCATCATGCCGGGCATTATTTCC
AAAGCTCTGTAGGACAGCTGGGGAACATCCTGAGATTGTATTCCTAAAAG
TCAATTTTGATGAGAACAAACCAATGTGCAAAAGTTTGAATGTGAAGGTG
CTTCCTTATTTCCACTTTTACCGCGGCGCCCATGGACAGTTAGAATCATT
TTCGTGTTCACTTGCTAAGTTTCAAAAAATAAAAGAGGCCATAGCACTGC
ACAATACGGATCGTTGCAGCATTGGCCCAC
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