DR403309

Overview
NameDR403309
Unique NameDR403309
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length718
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12584 contig Csv1_Contig12584:985..1702. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of DR403309 vs. ExPASy Swiss-Prot
Match: ISPG_PARUW (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Protochlamydia amoebophila (strain UWE25) GN=ispG PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.437e-15
Identity = 63/243 (25.93%), Postives = 116/243 (47.74%), Query Frame = 1 
Query:    4 SVSLDQLKAPELLYKSLAAKLVVGMPFKDLATVDSILLRELPSVDDHDARLALKRLVDISMGVITPLSEQLTKPLPHAMVLVNLQELSTGAYKLLPE-----GTRLVVSLSGDESYEELEILKDIDATMILHDLPFNEDKIGRVQAARRLFEYLSENNLNFPVIHHIQFPNGIHRDDLVIGAGSNXXXXXXXXXXXXXXXEAPGQDFDFLRDTSFNLLQGCRMRNTKTEYVSCPSCGRTLFDL 717
            S+ ++ LK   L Y+ +  +   G P    AT D+++L+  P+ D  + R  L+ L D+ +G+ +    +++  +      +  + + + A +         G  L++ ++ +   E  E++      +IL           R+  +R+ FE+L +N LN+PVI +  +      +D ++ A                  E P  D  FLR  SF++LQ  R+R +KT+++SCPSCGRTLF+L
Sbjct:  337 SLPINMLKEASL-YQQIGCEGPFGKPKLKTATADNLVLKN-PNSDSEEKR-QLQILKDLGIGLFSKDPFEMSLVIHPLKKWLQSRAVDSFASRFSSSWAKSAGQPLIIQITDETEKEWKEVISLKPQLIIL------SPSTNRLHYSRQFFEWLQQNQLNYPVILNFTYQG--ENEDTILLASMECGSLLCDGLGEGVWLEGP-YDILFLRQLSFSILQAARLRMSKTDFISCPSCGRTLFNL 567
The following BLAST results are available for this feature:
BLAST of DR403309 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
ISPG_PARUW3.437e-1525.934-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
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Properties
Property NameValue
Genbank descriptionCSAF-PNP1244I18 Flavedo Mature Citrus sinensis cDNA clone CSAF-PNP1244I18 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR403309 ID=DR403309; Name=DR403309; organism=Citrus sinensis; type=EST; length=718bp
GGGTCCGTTTCTCTGGATCAGTTGAAGGCACCGGAATTACTGTACAAGTC
ACTTGCAGCAAAGCTAGTCGTTGGCATGCCGTTCAAGGATCTAGCAACAG
TCGATTCAATCTTGTTAAGAGAGCTTCCGTCAGTTGATGATCATGATGCT
CGTCTAGCTCTGAAACGGTTGGTAGATATAAGTATGGGAGTTATAACTCC
TTTGTCTGAGCAGCTAACAAAGCCACTGCCCCACGCCATGGTTCTGGTAA
ACCTTCAGGAGTTATCAACTGGCGCATACAAGCTTTTGCCAGAAGGAACA
CGATTGGTTGTATCATTAAGCGGTGACGAATCCTACGAAGAGCTGGAAAT
CCTCAAAGATATTGACGCAACAATGATTCTTCATGATTTACCCTTTAATG
AAGATAAAATTGGCAGAGTACAGGCAGCTAGGAGGCTATTTGAGTATCTA
TCAGAAAATAATCTAAACTTCCCTGTAATTCACCATATTCAGTTTCCGAA
TGGGATTCACAGGGATGACTTGGTCATTGGTGCCGGTTCCAATGTAGGAG
CCCTTTTAGTCGATGGACTTGGAGATGGTTTGCTGTTAGAAGCCCCAGGA
CAAGATTTTGATTTTCTGAGGGACACATCTTTCAACTTACTACAAGGTTG
CAGAATGAGGAATACAAAGACGGAGTATGTCTCATGTCCATCATGTGGTA
GAACTTTGTTTGACCTTC
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