DR403304

Overview
NameDR403304
Unique NameDR403304
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length554
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2605 contig Csv1_Contig2605:98..652. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DR403304 vs. ExPASy Swiss-Prot
Match: TRXH_RICCO (Thioredoxin H-type OS=Ricinus communis PE=3 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 1.166e-49
Identity = 68/77 (88.31%), Postives = 74/77 (96.10%), Query Frame = 1
Query:  217 GPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKTVDKVVGAKKEELQQTIAKHLATAS 447
            GPCRFIAPFLAELAKKLPNV FLKVDVDELK+VA +WAVE+MPTFMFLKEGK +DKVVGAKK+ELQQTIAKH+ATAS
Sbjct:   41 GPCRFIAPFLAELAKKLPNVTFLKVDVDELKTVAHEWAVESMPTFMFLKEGKIMDKVVGAKKDELQQTIAKHMATAS 117          

HSP 2 Score: 76.2554 bits (186), Expect = 1.166e-49
Identity = 34/38 (89.47%), Postives = 36/38 (94.74%), Query Frame = 2
Query:  101 AAEEGQVIGCHTVEAWNEQLQKSNETKQLVVVDFTASW 214
            AAEEGQVIGCHTVEAWNEQLQK N+TK L+VVDFTASW
Sbjct:    2 AAEEGQVIGCHTVEAWNEQLQKGNDTKGLIVVDFTASW 39          
BLAST of DR403304 vs. ExPASy Swiss-Prot
Match: TRXH1_ARATH (Thioredoxin H-type 1 OS=Arabidopsis thaliana GN=TRX1 PE=1 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 6.737e-47
Identity = 64/74 (86.49%), Postives = 70/74 (94.59%), Query Frame = 1
Query:  217 GPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKTVDKVVGAKKEELQQTIAKHLA 438
            GPCRFIAPF A+LAKKLPNVLFLKVD DELKSVA+DWA++AMPTFMFLKEGK +DKVVGAKK+ELQ TIAKHLA
Sbjct:   41 GPCRFIAPFFADLAKKLPNVLFLKVDTDELKSVASDWAIQAMPTFMFLKEGKILDKVVGAKKDELQSTIAKHLA 114          

HSP 2 Score: 72.0182 bits (175), Expect = 6.737e-47
Identity = 32/38 (84.21%), Postives = 35/38 (92.11%), Query Frame = 2
Query:  101 AAEEGQVIGCHTVEAWNEQLQKSNETKQLVVVDFTASW 214
            A+EEGQVI CHTVE WNEQLQK+NE+K LVVVDFTASW
Sbjct:    2 ASEEGQVIACHTVETWNEQLQKANESKTLVVVDFTASW 39          
BLAST of DR403304 vs. ExPASy Swiss-Prot
Match: TRXH2_TOBAC (Thioredoxin H-type 2 OS=Nicotiana tabacum PE=3 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 5.059e-44
Identity = 65/77 (84.42%), Postives = 71/77 (92.21%), Query Frame = 1
Query:  217 GPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKTVDKVVGAKKEELQQTIAKHLATAS 447
            GPC+FIA F AELAKK+P V FLKVDVDELKSVATDWAVEAMPTFMFLKEGK VDKVVGAKK+ELQQTIAKH+++ S
Sbjct:   40 GPCKFIASFYAELAKKMPTVTFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKDELQQTIAKHISSTS 116          

HSP 2 Score: 63.1586 bits (152), Expect = 5.059e-44
Identity = 28/37 (75.68%), Postives = 32/37 (86.49%), Query Frame = 2
Query:  104 AEEGQVIGCHTVEAWNEQLQKSNETKQLVVVDFTASW 214
            AEEGQVIG HTV+AWNE LQK  + K+L+VVDFTASW
Sbjct:    2 AEEGQVIGVHTVDAWNEHLQKGIDDKKLIVVDFTASW 38          
BLAST of DR403304 vs. ExPASy Swiss-Prot
Match: TRXH1_TOBAC (Thioredoxin H-type 1 OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 3.786e-41
Identity = 57/77 (74.03%), Postives = 71/77 (92.21%), Query Frame = 1
Query:  217 GPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKTVDKVVGAKKEELQQTIAKHLATAS 447
            GPCRFIAP LA++AKK+P+V+FLKVDVDELK+V+ +W+VEAMPTF+F+K+GK VD+VVGAKKEELQQTI KH A A+
Sbjct:   47 GPCRFIAPILADIAKKMPHVIFLKVDVDELKTVSAEWSVEAMPTFVFIKDGKEVDRVVGAKKEELQQTIVKHAAPAT 123          

HSP 2 Score: 62.3882 bits (150), Expect = 3.786e-41
Identity = 27/41 (65.85%), Postives = 32/41 (78.05%), Query Frame = 2
Query:   92 EMAAAEEGQVIGCHTVEAWNEQLQKSNETKQLVVVDFTASW 214
            +  ++EEGQV GCH VE WNE  +K  ETK+LVVVDFTASW
Sbjct:    5 DATSSEEGQVFGCHKVEEWNEYFKKGVETKKLVVVDFTASW 45          
BLAST of DR403304 vs. ExPASy Swiss-Prot
Match: TRXH5_ARATH (Thioredoxin H-type 5 OS=Arabidopsis thaliana GN=TRX5 PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 2.641e-32
Identity = 43/71 (60.56%), Postives = 58/71 (81.69%), Query Frame = 1
Query:  220 PCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKTVDKVVGAKKEELQQTIAKH 432
            PCRFIAP  AE+AKK  NV+F K+DVDEL++VA ++ VEAMPTF+F+KEG  +D+VVGA K+E+ + + KH
Sbjct:   41 PCRFIAPVFAEMAKKFTNVVFFKIDVDELQAVAQEFKVEAMPTFVFMKEGNIIDRVVGAAKDEINEKLMKH 111          

HSP 2 Score: 60.077 bits (144), Expect = 2.641e-32
Identity = 23/37 (62.16%), Postives = 33/37 (89.19%), Query Frame = 2
Query:  104 AEEGQVIGCHTVEAWNEQLQKSNETKQLVVVDFTASW 214
            A EG+VI CHT+E WNE+++ +NE+K+L+V+DFTASW
Sbjct:    2 AGEGEVIACHTLEVWNEKVKDANESKKLIVIDFTASW 38          
BLAST of DR403304 vs. ExPASy Swiss-Prot
Match: TRXH_ORYSJ (Thioredoxin H-type OS=Oryza sativa subsp. japonica GN=TRXH PE=1 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 4.822e-31
Identity = 50/78 (64.10%), Postives = 60/78 (76.92%), Query Frame = 1
Query:  217 GPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKTVDKVVGAKKEELQQTIAKHLATASA 450
            GPCRFIAP  AE AKK P  +FLKVDVDELK VA  + VEAMPTF+F+K+G   DKVVGA+K++LQ TI KH+   +A
Sbjct:   41 GPCRFIAPVFAEYAKKFPGAVFLKVDVDELKEVAEKYNVEAMPTFLFIKDGAEADKVVGARKDDLQNTIVKHVGATAA 118          

HSP 2 Score: 46.9802 bits (110), Expect = 4.822e-31
Identity = 19/38 (50.00%), Postives = 28/38 (73.68%), Query Frame = 2
Query:  101 AAEEGQVIGCHTVEAWNEQLQKSNETKQLVVVDFTASW 214
            AAEEG VI CH  + ++ Q+ K+ E  ++V++DFTASW
Sbjct:    2 AAEEGVVIACHNKDEFDAQMTKAKEAGKVVIIDFTASW 39          
BLAST of DR403304 vs. ExPASy Swiss-Prot
Match: TRXH_ORYSI (Thioredoxin H-type OS=Oryza sativa subsp. indica GN=TRXH PE=1 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 4.822e-31
Identity = 50/78 (64.10%), Postives = 60/78 (76.92%), Query Frame = 1
Query:  217 GPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKTVDKVVGAKKEELQQTIAKHLATASA 450
            GPCRFIAP  AE AKK P  +FLKVDVDELK VA  + VEAMPTF+F+K+G   DKVVGA+K++LQ TI KH+   +A
Sbjct:   41 GPCRFIAPVFAEYAKKFPGAVFLKVDVDELKEVAEKYNVEAMPTFLFIKDGAEADKVVGARKDDLQNTIVKHVGATAA 118          

HSP 2 Score: 46.9802 bits (110), Expect = 4.822e-31
Identity = 19/38 (50.00%), Postives = 28/38 (73.68%), Query Frame = 2
Query:  101 AAEEGQVIGCHTVEAWNEQLQKSNETKQLVVVDFTASW 214
            AAEEG VI CH  + ++ Q+ K+ E  ++V++DFTASW
Sbjct:    2 AAEEGVVIACHNKDEFDAQMTKAKEAGKVVIIDFTASW 39          
BLAST of DR403304 vs. ExPASy Swiss-Prot
Match: TRXH_FAGES (Thioredoxin H-type OS=Fagopyrum esculentum PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 6.284e-31
Identity = 43/72 (59.72%), Postives = 58/72 (80.56%), Query Frame = 1
Query:  217 GPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKTVDKVVGAKKEELQQTIAKH 432
            GPCR I P+++ELAKK P+V F KVDVD+LK VA ++ VEAMP+F+ LKEG+ V+++VGA+K+EL   IA H
Sbjct:   40 GPCRVITPYVSELAKKFPHVAFFKVDVDDLKDVAEEYKVEAMPSFVILKEGQEVERIVGARKDELLHKIAVH 111          

HSP 2 Score: 58.5362 bits (140), Expect = 6.284e-31
Identity = 23/37 (62.16%), Postives = 31/37 (83.78%), Query Frame = 2
Query:  104 AEEGQVIGCHTVEAWNEQLQKSNETKQLVVVDFTASW 214
            AEE QVI CHTV+ WNE+ QK+ ++ +L+V+DFTASW
Sbjct:    2 AEEAQVIACHTVQEWNEKFQKAKDSGKLIVIDFTASW 38          
BLAST of DR403304 vs. ExPASy Swiss-Prot
Match: TRXH_PICMA (Thioredoxin H-type OS=Picea mariana GN=SB09 PE=2 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.064e-30
Identity = 47/77 (61.04%), Postives = 60/77 (77.92%), Query Frame = 1
Query:  217 GPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKTVDKVVGAKKEELQQTIAKHLATAS 447
            GPCR I P   EL+KK P + FLKVDVDEL+ VA +W VEAMPTF+F+K+GK VDKVVGAKK++L++ +A   A A+
Sbjct:   39 GPCRVIGPVFVELSKKFPEIFFLKVDVDELRDVAQEWDVEAMPTFIFIKDGKAVDKVVGAKKDDLERKVAALAAAAT 115          

HSP 2 Score: 49.2914 bits (116), Expect = 1.064e-30
Identity = 19/35 (54.29%), Postives = 26/35 (74.29%), Query Frame = 2
Query:  110 EGQVIGCHTVEAWNEQLQKSNETKQLVVVDFTASW 214
            EG V  CH+ E W  +LQ++ +TK+LV VDFTA+W
Sbjct:    3 EGNVFACHSTEGWRSKLQEAIDTKRLVAVDFTATW 37          
BLAST of DR403304 vs. ExPASy Swiss-Prot
Match: TRXH2_BRANA (Thioredoxin H-type 2 OS=Brassica napus GN=THL-2 PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.065e-30
Identity = 47/78 (60.26%), Postives = 61/78 (78.21%), Query Frame = 1
Query:  220 PCRFIAPFLAELAKK-LPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKTVDKVVGAKKEELQQTIAKHLATASA 450
            PCR IAP  A+LAKK + + +F KVDVDEL++VA ++ VEAMPTF+ +K+G  VDKVVGA+KE+L  TIAKH   A+A
Sbjct:   42 PCRMIAPVFADLAKKFMSSAIFFKVDVDELQNVAQEFGVEAMPTFVLIKDGNVVDKVVGARKEDLHATIAKHTGVATA 119          

HSP 2 Score: 56.225 bits (134), Expect = 1.065e-30
Identity = 22/38 (57.89%), Postives = 30/38 (78.95%), Query Frame = 2
Query:  101 AAEEGQVIGCHTVEAWNEQLQKSNETKQLVVVDFTASW 214
            AAEEGQVIGCH ++ W  QL  + ++ +L+V+DFTASW
Sbjct:    2 AAEEGQVIGCHEIDVWAVQLDTAKQSNKLIVIDFTASW 39          
The following BLAST results are available for this feature:
BLAST of DR403304 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 44
Match NameE-valueIdentityDescription
TRXH_RICCO1.166e-4988.31Thioredoxin H-type OS=Ricinus communis PE=3 SV=1[more]
TRXH1_ARATH6.737e-4786.49Thioredoxin H-type 1 OS=Arabidopsis thaliana GN=TR... [more]
TRXH2_TOBAC5.059e-4484.42Thioredoxin H-type 2 OS=Nicotiana tabacum PE=3 SV=... [more]
TRXH1_TOBAC3.786e-4174.03Thioredoxin H-type 1 OS=Nicotiana tabacum PE=2 SV=... [more]
TRXH5_ARATH2.641e-3260.56Thioredoxin H-type 5 OS=Arabidopsis thaliana GN=TR... [more]
TRXH_ORYSJ4.822e-3164.10Thioredoxin H-type OS=Oryza sativa subsp. japonica... [more]
TRXH_ORYSI4.822e-3164.10Thioredoxin H-type OS=Oryza sativa subsp. indica G... [more]
TRXH_FAGES6.284e-3159.72Thioredoxin H-type OS=Fagopyrum esculentum PE=3 SV... [more]
TRXH_PICMA1.064e-3061.04Thioredoxin H-type OS=Picea mariana GN=SB09 PE=2 S... [more]
TRXH2_BRANA1.065e-3060.26Thioredoxin H-type 2 OS=Brassica napus GN=THL-2 PE... [more]

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Properties
Property NameValue
Genbank descriptionCSAF-PNP1244I10 Flavedo Mature Citrus sinensis cDNA clone CSAF-PNP1244I10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR403304 ID=DR403304; Name=DR403304; organism=Citrus sinensis; type=EST; length=554bp
GGGGATACGCAAATCACCAAGAGCAAGAAAGCGAGGGAGAGAATAGAAGT
ATCGTTGGGTGGAGTAGTGGTGGTAATAACCGCGGAAAGCAGAAATGGCA
GCAGCAGAAGAGGGACAAGTCATCGGGTGCCACACCGTTGAGGCCTGGAA
CGAGCAGCTCCAGAAGAGCAATGAAACCAAACAGCTGGTTGTTGTTGATT
TCACTGCTTCATGGGCGGACCATGCCGTTTCATTGCTCCTTTCTTGGCAG
AGCTGGCCAAGAAACTGCCTAATGTCCTGTTTCTGAAGGTTGATGTGGAT
GAACTGAAGAGTGTTGCCACTGACTGGGCAGTGGAGGCCATGCCAACTTT
CATGTTCCTGAAAGAGGGGAAGACTGTGGACAAGGTGGTTGGAGCAAAGA
AAGAGGAACTGCAGCAGACTATTGCCAAGCATCTGGCAACTGCTTCTGCC
TAATAAGTTATAACTATCCTCCTGCCTTTTGGCTTTAGAGGCTATAGACC
TCAATATATGCTATCAGTCTGTAATTTACTTATTATAGTGGTTATGGGAT
TGTG
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