DR403292

Overview
NameDR403292
Unique NameDR403292
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length382
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5695 contig Csv1_Contig5695:482..863. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DR403292 vs. ExPASy Swiss-Prot
Match: ELI_PEA (Early light-induced protein, chloroplastic OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 5.050e-15
Identity = 38/52 (73.08%), Postives = 45/52 (86.54%), Query Frame = 1
Query:    4 VASLVPLFKGVSVESKSDGFMTSDAELWNGRFAMMGLVALAVTEFVKGSTLV 159
            +ASL+P F+GVSVESKS   M+SDAE WNGR AM+GLVALA TEFVKG++LV
Sbjct:  145 LASLIPFFQGVSVESKSKSIMSSDAEFWNGRIAMLGLVALAFTEFVKGTSLV 196          
BLAST of DR403292 vs. ExPASy Swiss-Prot
Match: ELI5_HORVU (High molecular mass early light-inducible protein HV58, chloroplastic OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 9.523e-14
Identity = 36/52 (69.23%), Postives = 43/52 (82.69%), Query Frame = 1
Query:    4 VASLVPLFKGVSVESKSDGFMTSDAELWNGRFAMMGLVALAVTEFVKGSTLV 159
            VASL+PL +G SVESKS G  ++DAELWNGRFAM+GLVALA TEF+ G+  V
Sbjct:  178 VASLLPLLQGQSVESKSSGIWSADAELWNGRFAMLGLVALAATEFITGAPFV 229          
BLAST of DR403292 vs. ExPASy Swiss-Prot
Match: DS22_CRAPL (Desiccation stress protein DSP-22, chloroplastic OS=Craterostigma plantagineum GN=DSP-22 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 9.523e-14
Identity = 32/52 (61.54%), Postives = 46/52 (88.46%), Query Frame = 1
Query:    4 VASLVPLFKGVSVESKSDGFMTSDAELWNGRFAMMGLVALAVTEFVKGSTLV 159
            +A+L+P+++G+S E+K++GF  SDAE+WNGRFAM+GLVALA TE+VKG  L+
Sbjct:  146 LATLIPIYRGLSPEAKNNGFWNSDAEIWNGRFAMIGLVALAFTEYVKGGPLI 197          
The following BLAST results are available for this feature:
BLAST of DR403292 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
ELI_PEA5.050e-1573.08Early light-induced protein, chloroplastic OS=Pisu... [more]
ELI5_HORVU9.523e-1469.23High molecular mass early light-inducible protein ... [more]
DS22_CRAPL9.523e-1461.54Desiccation stress protein DSP-22, chloroplastic O... [more]
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Properties
Property NameValue
Genbank descriptionCSAF-PNP1244H19 Flavedo Mature Citrus sinensis cDNA clone CSAF-PNP1244H19 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR403292 ID=DR403292; Name=DR403292; organism=Citrus sinensis; type=EST; length=382bp
GGGGTTGCGTCCCTGGTTCCTTTGTTTAAAGGTGTCAGCGTGGAGTCTAA
ATCGGATGGGTTCATGACTTCGGATGCTGAGTTGTGGAATGGGAGGTTCG
CTATGATGGGTCTTGTTGCTTTGGCTGTCACTGAGTTTGTTAAAGGCAGT
ACCCTTGTTTAGTTAAGTCCAATTTTCCAGTGATATGCGGACTGCAGAGT
CTTGAAATGATAACAAGACCCTATTCTTAATACTTGAAGCGCACGTCATG
TTTCTTCCGTGGCTAATTATTGTGTATGAATTATGGTGGTGTTGTATGTA
AATCTCTGTTTTCCCATGCCAATTCTCTAAATAAATCACCCTTTTCTGTT
TTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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