DR403289

Overview
NameDR403289
Unique NameDR403289
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length587
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR403289 vs. ExPASy Swiss-Prot
Match: TLP40_SPIOL (Peptidyl-prolyl cis-trans isomerase, chloroplastic OS=Spinacia oleracea GN=TLP40 PE=1 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 5.343e-44
Identity = 84/99 (84.85%), Postives = 96/99 (96.97%), Query Frame = 2
Query:    5 EELGLYKAQTKLPFNAFGTMAMARDEFEDNSGSSQVFWLLKESELTPSNANILDGRYAVFGYVTENEGLLADVQVGDVIQSIQVVSGLENLVNPSYKIA 301
            EELGLYKAQTKLPFNAFGTMAMAR+EFE+NSGSSQ+FWLLKESELTPSNANILDGRYAVFGYVT+N+  LAD++VGDVI+S+Q VSG++NLVNP+YKIA
Sbjct:  350 EELGLYKAQTKLPFNAFGTMAMAREEFENNSGSSQIFWLLKESELTPSNANILDGRYAVFGYVTDNQDYLADLKVGDVIESVQAVSGVDNLVNPTYKIA 448          
BLAST of DR403289 vs. ExPASy Swiss-Prot
Match: CYP38_ARATH (Peptidyl-prolyl cis-trans isomerase CYP38, chloroplastic OS=Arabidopsis thaliana GN=CYP38 PE=1 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 3.463e-43
Identity = 85/99 (85.86%), Postives = 94/99 (94.95%), Query Frame = 2
Query:    5 EELGLYKAQTKLPFNAFGTMAMARDEFEDNSGSSQVFWLLKESELTPSNANILDGRYAVFGYVTENEGLLADVQVGDVIQSIQVVSGLENLVNPSYKIA 301
            EELGLYKAQ  +PFNAFGTMAMAR+EFE++SGSSQVFWLLKESELTPSN+NILDGRYAVFGYVT+NE  LAD++VGDVI+SIQVVSGLENL NPSYKIA
Sbjct:  338 EELGLYKAQVVIPFNAFGTMAMAREEFENDSGSSQVFWLLKESELTPSNSNILDGRYAVFGYVTDNEDFLADLKVGDVIESIQVVSGLENLANPSYKIA 436          
BLAST of DR403289 vs. ExPASy Swiss-Prot
Match: PPI3_SYNY3 (Putative thylakoid lumen peptidyl-prolyl cis-trans isomerase sll0408 OS=Synechocystis sp. (strain PCC 6803) GN=sll0408 PE=3 SV=2)

HSP 1 Score: 97.4413 bits (241), Expect = 5.380e-20
Identity = 46/93 (49.46%), Postives = 64/93 (68.82%), Query Frame = 2
Query:    5 EELGLYKAQTKLPFNAFGTMAMARDEFEDNSGSSQVFWLLKESELTPSNANILDGRYAVFGYVTENEGLLADVQVGDVIQSIQVVSGLENLVN 283
            E+ G+Y  +  LPFNA+G +A+AR E E N GSSQ F+   ++ELTP   N++DGRY+VFGYV + +  L  +  GD I S +V+SG +NLVN
Sbjct:  284 EDAGMYLPELALPFNAYGAIALARPETEPNGGSSQFFFFKFDTELTPPGFNLMDGRYSVFGYVVDGKETLEQLSEGDKIVSAKVISGADNLVN 376          
The following BLAST results are available for this feature:
BLAST of DR403289 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
TLP40_SPIOL5.343e-4484.85Peptidyl-prolyl cis-trans isomerase, chloroplastic... [more]
CYP38_ARATH3.463e-4385.86Peptidyl-prolyl cis-trans isomerase CYP38, chlorop... [more]
PPI3_SYNY35.380e-2049.46Putative thylakoid lumen peptidyl-prolyl cis-trans... [more]
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Properties
Property NameValue
Genbank descriptionCSAF-PNP1244H16 Flavedo Mature Citrus sinensis cDNA clone CSAF-PNP1244H16 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR403289 ID=DR403289; Name=DR403289; organism=Citrus sinensis; type=EST; length=587bp
GGGGGAGGAGCTTGGTCTCTACAAGGCTCAAACAAAGCTTCCATTTAATG
CTTTTGGAACGATGGCGATGGCTAGAGATGAGTTCGAGGATAACTCTGGT
TCAAGCCAGGTATTCTGGCTTCTAAAAGAAAGTGAATTAACTCCTAGTAA
TGCCAATATTTTGGATGGCCGATATGCAGTGTTTGGTTATGTGACGGAAA
ATGAAGGTCTTTTGGCGGATGTCCAGGTTGGTGACGTGATTCAATCAATT
CAAGTAGTGTCCGGCCTGGAAAATCTAGTCAACCCAAGCTACAAGATTGC
TGCTTAGACCTTTTCAATCATCGGTTCTTGATTATGGGTGACACTAATGA
CAAACTAATCGATCTAAAGCCGATTACTCTATATTTGGTTTCAAACTATG
AATTTGTTATTCGTTCAATAACTCTTCATTTTTTTTTCCTTTCGAGAGAA
TTGTAGTAATCAAAACGACGGTGCATTCTTTTGAACGTTACTAGTGTGAC
CCCTGAATTTGTTACCAAACTAGTTTTATCGCTTTGACTTAATAAGATTT
GCATTAAGCAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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