DR403275

Overview
NameDR403275
Unique NameDR403275
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length379
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3888 contig Csv1_Contig3888:1849..2227. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DR403275 vs. ExPASy Swiss-Prot
Match: ATPA_CITSI (ATP synthase subunit alpha, chloroplastic OS=Citrus sinensis GN=atpA PE=3 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 2.123e-37
Identity = 82/100 (82.00%), Postives = 82/100 (82.00%), Query Frame = 3
Query:    6 QNQLAMGQRLRELLKQAQAXPLTVEEQIMTIYTGTNGYLDSLEIGQVRKFLVELRTYLKTNKPQFQEIISSTKIFTXXXXXXXXXXXXXXXXRFLLQEQF 305
            QNQLA GQRLRELLKQAQA PLTVEEQIMTIYTGTNGYLDSLEIGQVRKFLVELRTYLKTNKPQFQEIISSTKIFT                RFLLQEQF
Sbjct:  408 QNQLARGQRLRELLKQAQAAPLTVEEQIMTIYTGTNGYLDSLEIGQVRKFLVELRTYLKTNKPQFQEIISSTKIFTEEAEALLQEAIQEQKERFLLQEQF 507          
BLAST of DR403275 vs. ExPASy Swiss-Prot
Match: ATPA_EUCGG (ATP synthase subunit alpha, chloroplastic OS=Eucalyptus globulus subsp. globulus GN=atpA PE=3 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 1.987e-35
Identity = 78/99 (78.79%), Postives = 80/99 (80.81%), Query Frame = 3
Query:    6 QNQLAMGQRLRELLKQAQAXPLTVEEQIMTIYTGTNGYLDSLEIGQVRKFLVELRTYLKTNKPQFQEIISSTKIFTXXXXXXXXXXXXXXXXRFLLQEQ 302
            QNQLA GQRLRELLKQ+QA PLTVEEQIMTIYTGTNGYLDSLEIGQVRKFLVELRTY+KTNKPQFQEIISSTK FT                RFLLQEQ
Sbjct:  408 QNQLARGQRLRELLKQSQAAPLTVEEQIMTIYTGTNGYLDSLEIGQVRKFLVELRTYVKTNKPQFQEIISSTKTFTEEAEALLKEAIQEQKERFLLQEQ 506          
BLAST of DR403275 vs. ExPASy Swiss-Prot
Match: ATPA_DAUCA (ATP synthase subunit alpha, chloroplastic OS=Daucus carota GN=atpA PE=3 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 3.390e-35
Identity = 77/99 (77.78%), Postives = 80/99 (80.81%), Query Frame = 3
Query:    6 QNQLAMGQRLRELLKQAQAXPLTVEEQIMTIYTGTNGYLDSLEIGQVRKFLVELRTYLKTNKPQFQEIISSTKIFTXXXXXXXXXXXXXXXXRFLLQEQ 302
            QNQLA GQRLRELLKQ+Q+ PL VEEQIMTIYTGTNGYLDSLEIGQVRKFLVELRTYLKTNKPQFQEIISSTKIFT                RF+LQEQ
Sbjct:  408 QNQLARGQRLRELLKQSQSAPLAVEEQIMTIYTGTNGYLDSLEIGQVRKFLVELRTYLKTNKPQFQEIISSTKIFTEEAEALLKEAIQEQMERFILQEQ 506          
BLAST of DR403275 vs. ExPASy Swiss-Prot
Match: ATPA_TOBAC (ATP synthase subunit alpha, chloroplastic OS=Nicotiana tabacum GN=atpA PE=2 SV=2)

HSP 1 Score: 146.362 bits (368), Expect = 4.427e-35
Identity = 76/99 (76.77%), Postives = 80/99 (80.81%), Query Frame = 3
Query:    6 QNQLAMGQRLRELLKQAQAXPLTVEEQIMTIYTGTNGYLDSLEIGQVRKFLVELRTYLKTNKPQFQEIISSTKIFTXXXXXXXXXXXXXXXXRFLLQEQ 302
            QNQLA GQRLRELLKQ+Q+ PLTVEEQIMTIYTGTNGYLDSLE+GQVRKFLVELRTYLKTNKPQFQEIISSTK FT                RF+LQEQ
Sbjct:  408 QNQLARGQRLRELLKQSQSAPLTVEEQIMTIYTGTNGYLDSLEVGQVRKFLVELRTYLKTNKPQFQEIISSTKTFTEEAEALLKEAIQEQMDRFILQEQ 506          
BLAST of DR403275 vs. ExPASy Swiss-Prot
Match: ATPA_NICTO (ATP synthase subunit alpha, chloroplastic OS=Nicotiana tomentosiformis GN=atpA PE=3 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 4.427e-35
Identity = 76/99 (76.77%), Postives = 80/99 (80.81%), Query Frame = 3
Query:    6 QNQLAMGQRLRELLKQAQAXPLTVEEQIMTIYTGTNGYLDSLEIGQVRKFLVELRTYLKTNKPQFQEIISSTKIFTXXXXXXXXXXXXXXXXRFLLQEQ 302
            QNQLA GQRLRELLKQ+Q+ PLTVEEQIMTIYTGTNGYLDSLE+GQVRKFLVELRTYLKTNKPQFQEIISSTK FT                RF+LQEQ
Sbjct:  408 QNQLARGQRLRELLKQSQSAPLTVEEQIMTIYTGTNGYLDSLEVGQVRKFLVELRTYLKTNKPQFQEIISSTKTFTEEAEALLKEAIQEQTDRFILQEQ 506          
BLAST of DR403275 vs. ExPASy Swiss-Prot
Match: ATPA_NICSY (ATP synthase subunit alpha, chloroplastic OS=Nicotiana sylvestris GN=atpA PE=3 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 4.427e-35
Identity = 76/99 (76.77%), Postives = 80/99 (80.81%), Query Frame = 3
Query:    6 QNQLAMGQRLRELLKQAQAXPLTVEEQIMTIYTGTNGYLDSLEIGQVRKFLVELRTYLKTNKPQFQEIISSTKIFTXXXXXXXXXXXXXXXXRFLLQEQ 302
            QNQLA GQRLRELLKQ+Q+ PLTVEEQIMTIYTGTNGYLDSLE+GQVRKFLVELRTYLKTNKPQFQEIISSTK FT                RF+LQEQ
Sbjct:  408 QNQLARGQRLRELLKQSQSAPLTVEEQIMTIYTGTNGYLDSLEVGQVRKFLVELRTYLKTNKPQFQEIISSTKTFTEEAEALLKEAIQEQMDRFILQEQ 506          
BLAST of DR403275 vs. ExPASy Swiss-Prot
Match: ATPA_ATRBE (ATP synthase subunit alpha, chloroplastic OS=Atropa belladonna GN=atpA PE=3 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 4.427e-35
Identity = 76/99 (76.77%), Postives = 80/99 (80.81%), Query Frame = 3
Query:    6 QNQLAMGQRLRELLKQAQAXPLTVEEQIMTIYTGTNGYLDSLEIGQVRKFLVELRTYLKTNKPQFQEIISSTKIFTXXXXXXXXXXXXXXXXRFLLQEQ 302
            QNQLA GQRLRELLKQ+Q+ PLTVEEQIMTIYTGTNGYLDSLE+GQVRKFLVELRTYLKTNKPQFQEIISSTK FT                RF+LQEQ
Sbjct:  408 QNQLARGQRLRELLKQSQSAPLTVEEQIMTIYTGTNGYLDSLEVGQVRKFLVELRTYLKTNKPQFQEIISSTKTFTEEAEALLKEAIQEQMKRFILQEQ 506          
BLAST of DR403275 vs. ExPASy Swiss-Prot
Match: ATPA_MANES (ATP synthase subunit alpha, chloroplastic OS=Manihot esculenta GN=atpA PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 7.551e-35
Identity = 76/99 (76.77%), Postives = 80/99 (80.81%), Query Frame = 3
Query:    6 QNQLAMGQRLRELLKQAQAXPLTVEEQIMTIYTGTNGYLDSLEIGQVRKFLVELRTYLKTNKPQFQEIISSTKIFTXXXXXXXXXXXXXXXXRFLLQEQ 302
            QNQLA GQRLRELLKQ+Q+ PLTVEEQIMTIYTGTNGYLDSLEIGQVRKFLVELRTYLKTNKPQFQEIISSTK FT                RF++QEQ
Sbjct:  408 QNQLARGQRLRELLKQSQSAPLTVEEQIMTIYTGTNGYLDSLEIGQVRKFLVELRTYLKTNKPQFQEIISSTKTFTEEAETLLKEAIQEQKERFVIQEQ 506          
BLAST of DR403275 vs. ExPASy Swiss-Prot
Match: ATPA_CARPA (ATP synthase subunit alpha, chloroplastic OS=Carica papaya GN=atpA PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 7.551e-35
Identity = 77/98 (78.57%), Postives = 79/98 (80.61%), Query Frame = 3
Query:    6 QNQLAMGQRLRELLKQAQAXPLTVEEQIMTIYTGTNGYLDSLEIGQVRKFLVELRTYLKTNKPQFQEIISSTKIFTXXXXXXXXXXXXXXXXRFLLQE 299
            QNQLA GQRLRELLKQ+Q+ PLTVEEQIMTIYTGTNGYLDSLEIGQVRKFLVELRTYLKTNKPQFQEIISSTK FT                RFLLQE
Sbjct:  408 QNQLARGQRLRELLKQSQSAPLTVEEQIMTIYTGTNGYLDSLEIGQVRKFLVELRTYLKTNKPQFQEIISSTKTFTEEAETILKEAIQEQMERFLLQE 505          
BLAST of DR403275 vs. ExPASy Swiss-Prot
Match: ATPA_VITVI (ATP synthase subunit alpha, chloroplastic OS=Vitis vinifera GN=atpA PE=3 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 9.862e-35
Identity = 77/99 (77.78%), Postives = 78/99 (78.79%), Query Frame = 3
Query:    6 QNQLAMGQRLRELLKQAQAXPLTVEEQIMTIYTGTNGYLDSLEIGQVRKFLVELRTYLKTNKPQFQEIISSTKIFTXXXXXXXXXXXXXXXXRFLLQEQ 302
            QNQLA GQRLRELLKQ+QA PLTVEEQIMTIYTGTNGYLDSLEIGQVRKFL ELR YLKTNKPQFQEIISSTK FT                RFLLQEQ
Sbjct:  408 QNQLARGQRLRELLKQSQAAPLTVEEQIMTIYTGTNGYLDSLEIGQVRKFLAELRNYLKTNKPQFQEIISSTKTFTEEAETLLKETIQEQMERFLLQEQ 506          
The following BLAST results are available for this feature:
BLAST of DR403275 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 181
Match NameE-valueIdentityDescription
ATPA_CITSI2.123e-3782.00ATP synthase subunit alpha, chloroplastic OS=Citru... [more]
ATPA_EUCGG1.987e-3578.79ATP synthase subunit alpha, chloroplastic OS=Eucal... [more]
ATPA_DAUCA3.390e-3577.78ATP synthase subunit alpha, chloroplastic OS=Daucu... [more]
ATPA_TOBAC4.427e-3576.77ATP synthase subunit alpha, chloroplastic OS=Nicot... [more]
ATPA_NICTO4.427e-3576.77ATP synthase subunit alpha, chloroplastic OS=Nicot... [more]
ATPA_NICSY4.427e-3576.77ATP synthase subunit alpha, chloroplastic OS=Nicot... [more]
ATPA_ATRBE4.427e-3576.77ATP synthase subunit alpha, chloroplastic OS=Atrop... [more]
ATPA_MANES7.551e-3576.77ATP synthase subunit alpha, chloroplastic OS=Manih... [more]
ATPA_CARPA7.551e-3578.57ATP synthase subunit alpha, chloroplastic OS=Caric... [more]
ATPA_VITVI9.862e-3577.78ATP synthase subunit alpha, chloroplastic OS=Vitis... [more]

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Properties
Property NameValue
Genbank descriptionCSAF-PNP1244G18 Flavedo Mature Citrus sinensis cDNA clone CSAF-PNP1244G18 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR403275 ID=DR403275; Name=DR403275; organism=Citrus sinensis; type=EST; length=379bp
GGGCTCAGAACCAATTGGCAATGGGTCAACGCTTACGTGAGTTGCTCAAA
CAGGCCCAAGCANNNCCTCTCACGGTGGAAGAACAGATAATGACTATTTA
TACAGGAACGAATGGTTATCTTGATTCATTAGAAATTGGTCAAGTAAGAA
AATTTCTCGTTGAGTTACGTACTTACTTAAAAACGAATAAACCTCAGTTC
CAAGAAATAATATCTTCTACCAAGATATTCACCGAAGAAGCAGAAGCCCT
TTTGCAAGAAGCTATTCAGGAACAAAAGGAACGTTTTCTACTTCAGGAAC
AATTCTAAATAAAAAACCACTCTTATTCTTACTTTATAATACTTAATAAC
AAAAAAAAAAAAAAAAAAAGAAAAAAAAA
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