DR403261

Overview
NameDR403261
Unique NameDR403261
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length691
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6080 contig Csv1_Contig6080:1..676. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DR403261 vs. ExPASy Swiss-Prot
Match: RL31_PERFR (60S ribosomal protein L31 OS=Perilla frutescens GN=RPL31 PE=2 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 7.654e-33
Identity = 71/98 (72.45%), Postives = 76/98 (77.55%), Query Frame = 2
Query:  191 QRLHGCTFKKKAPKAIKEIRKFAQKAMGTTDVRVDVKLNKQVWSXXXXXXXXXXXXXXXXXXNDEEDAKEEFYSLVTVAEIPPEGLKGLGTKVIDEED 484
            +RLHGCTFKKKAPKAIKEIRKFAQKAMGTTDVRVDVKLNK +WS                  ND+EDAKEE YSLVTVAEIP  GLKGLGT+VIDEE+
Sbjct:   24 KRLHGCTFKKKAPKAIKEIRKFAQKAMGTTDVRVDVKLNKHIWSRGIRSVPRRIRVRIARKRNDDEDAKEELYSLVTVAEIPEGGLKGLGTQVIDEEE 121          
BLAST of DR403261 vs. ExPASy Swiss-Prot
Match: RL31_PICMA (60S ribosomal protein L31 OS=Picea mariana GN=RPL31 PE=2 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 9.997e-33
Identity = 68/98 (69.39%), Postives = 76/98 (77.55%), Query Frame = 2
Query:  191 QRLHGCTFKKKAPKAIKEIRKFAQKAMGTTDVRVDVKLNKQVWSXXXXXXXXXXXXXXXXXXNDEEDAKEEFYSLVTVAEIPPEGLKGLGTKVIDEED 484
            +RLHGCTFKK APKA+KEIRKFAQKAMGTTDVR+DVKLNK VWS                  NDEEDAK+E YS+VTVAE+PPEGL GLGTK+I+EED
Sbjct:   23 RRLHGCTFKKMAPKAVKEIRKFAQKAMGTTDVRLDVKLNKAVWSRGIRSVPRRMRVRISRKRNDEEDAKDELYSIVTVAEVPPEGLTGLGTKIIEEED 120          
BLAST of DR403261 vs. ExPASy Swiss-Prot
Match: RL313_ARATH (60S ribosomal protein L31-3 OS=Arabidopsis thaliana GN=RPL31C PE=2 SV=2)

HSP 1 Score: 139.043 bits (349), Expect = 2.227e-32
Identity = 70/98 (71.43%), Postives = 76/98 (77.55%), Query Frame = 2
Query:  191 QRLHGCTFKKKAPKAIKEIRKFAQKAMGTTDVRVDVKLNKQVWSXXXXXXXXXXXXXXXXXXNDEEDAKEEFYSLVTVAEIPPEGLKGLGTKVIDEED 484
            +RLH CTFKKKAPKAIKEIRKFA+KAMGT DVRVDVKLNKQ+WS                  ND+EDAKEEF+SLVTVAEIP EGL GLGTKVI+EED
Sbjct:   22 RRLHKCTFKKKAPKAIKEIRKFAEKAMGTKDVRVDVKLNKQIWSKGIRGPPRRIRVRVARKRNDDEDAKEEFFSLVTVAEIPAEGLSGLGTKVIEEED 119          
BLAST of DR403261 vs. ExPASy Swiss-Prot
Match: RL312_ARATH (60S ribosomal protein L31-2 OS=Arabidopsis thaliana GN=RPL31B PE=2 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 6.480e-32
Identity = 68/98 (69.39%), Postives = 75/98 (76.53%), Query Frame = 2
Query:  191 QRLHGCTFKKKAPKAIKEIRKFAQKAMGTTDVRVDVKLNKQVWSXXXXXXXXXXXXXXXXXXNDEEDAKEEFYSLVTVAEIPPEGLKGLGTKVIDEED 484
            +RLH CTFKKKAPKAIKEIRKFA+K MGT DVRVDVKLNKQ+WS                  ND+EDAKEEF+SLVTVAEIP EGL GLGTK+I+EED
Sbjct:   22 RRLHSCTFKKKAPKAIKEIRKFAEKEMGTKDVRVDVKLNKQIWSKGIRGPPRRIRVRVARKRNDDEDAKEEFFSLVTVAEIPAEGLSGLGTKIIEEED 119          
BLAST of DR403261 vs. ExPASy Swiss-Prot
Match: RL31_NICGU (60S ribosomal protein L31 OS=Nicotiana glutinosa GN=RPL31 PE=2 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.105e-31
Identity = 68/98 (69.39%), Postives = 75/98 (76.53%), Query Frame = 2
Query:  191 QRLHGCTFKKKAPKAIKEIRKFAQKAMGTTDVRVDVKLNKQVWSXXXXXXXXXXXXXXXXXXNDEEDAKEEFYSLVTVAEIPPEGLKGLGTKVIDEED 484
            +RLH CTFKKKAP AIKEIRKFAQKAMGT DVRVDVKLNKQ+WS                  ND+EDAKEE YSLVTVAEIP +GLKGLGTK+I++ED
Sbjct:   23 KRLHSCTFKKKAPTAIKEIRKFAQKAMGTKDVRVDVKLNKQIWSRGIRSVPRRVRVRIARKRNDDEDAKEELYSLVTVAEIPAKGLKGLGTKIIEDED 120          
BLAST of DR403261 vs. ExPASy Swiss-Prot
Match: RL311_ARATH (60S ribosomal protein L31-1 OS=Arabidopsis thaliana GN=RPL31A PE=2 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 4.200e-31
Identity = 68/98 (69.39%), Postives = 74/98 (75.51%), Query Frame = 2
Query:  191 QRLHGCTFKKKAPKAIKEIRKFAQKAMGTTDVRVDVKLNKQVWSXXXXXXXXXXXXXXXXXXNDEEDAKEEFYSLVTVAEIPPEGLKGLGTKVIDEED 484
            +RLH CTFKKKAP AIKEIRKFA KAMGT DVRVDVKLNKQ+WS                  ND+EDAKEEF+SLVTVAEIP EGL GLGTKVI+EE+
Sbjct:   22 RRLHSCTFKKKAPNAIKEIRKFALKAMGTKDVRVDVKLNKQIWSKGIRGPPRRIRVRVARKRNDDEDAKEEFFSLVTVAEIPAEGLSGLGTKVIEEEE 119          
BLAST of DR403261 vs. ExPASy Swiss-Prot
Match: RL31_PANGI (60S ribosomal protein L31 OS=Panax ginseng GN=RPL31 PE=2 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.351e-29
Identity = 65/98 (66.33%), Postives = 73/98 (74.49%), Query Frame = 2
Query:  191 QRLHGCTFKKKAPKAIKEIRKFAQKAMGTTDVRVDVKLNKQVWSXXXXXXXXXXXXXXXXXXNDEEDAKEEFYSLVTVAEIPPEGLKGLGTKVIDEED 484
            +RLHGCTFKKKAP AIKEIRKFAQKAMGT DVRVDVKLNKQ+WS                  ND+EDAKEE YSLVTVA+IP   LKGLG ++I+E+D
Sbjct:   23 KRLHGCTFKKKAPNAIKEIRKFAQKAMGTKDVRVDVKLNKQIWSRGIRSVPRRVRVRIARKRNDDEDAKEELYSLVTVAKIPAGTLKGLGPQIIEEDD 120          
BLAST of DR403261 vs. ExPASy Swiss-Prot
Match: RL31_CHLRE (60S ribosomal protein L31 OS=Chlamydomonas reinhardtii GN=RPL31 PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 8.548e-22
Identity = 53/96 (55.21%), Postives = 62/96 (64.58%), Query Frame = 2
Query:  191 QRLHGCTFKKKAPKAIKEIRKFAQKAMGTTDVRVDVKLNKQVWSXXXXXXXXXXXXXXXXXXNDEEDAKEEFYSLVTVAEIPPEGLKGLGTKVIDE 478
            +RLH  +FKK APKA+KEIRKFA K MGT+DVR+DVKLNK VWS                  ND+EDAKEE YS VTVAE   +  KG GT V+ +
Sbjct:   22 KRLHKTSFKKCAPKAVKEIRKFASKVMGTSDVRLDVKLNKAVWSKGIKNVPTRLRIVISRRRNDDEDAKEEMYSFVTVAE--DQSTKGKGTVVVQD 115          

HSP 2 Score: 25.409 bits (54), Expect = 8.548e-22
Identity = 11/16 (68.75%), Postives = 13/16 (81.25%), Query Frame = 3
Query:  141 KGRKEEVVTREYTINL 188
            K R +E VTREYTI+L
Sbjct:    5 KSRSKEQVTREYTIHL 20          
BLAST of DR403261 vs. ExPASy Swiss-Prot
Match: RL31_CYAPA (60S ribosomal protein L31 OS=Cyanophora paradoxa GN=RPL31 PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 6.291e-19
Identity = 49/97 (50.52%), Postives = 62/97 (63.92%), Query Frame = 2
Query:  191 QRLHGCTFKKKAPKAIKEIRKFAQKAMGTTDVRVDVKLNKQVWSXXXXXXXXXXXXXXXXXXNDEEDAKEEFYSLVTVAEIPPEGLKGLGTKVIDEE 481
            +RLHG  FKK+AP+A+KEI+KFA K MGTTDVRVD +LNK VW+                  ND+EDAKE+ Y+LVT   +P    KGL T+ +D E
Sbjct:   25 KRLHGVGFKKRAPRAVKEIKKFASKIMGTTDVRVDPRLNKFVWNQGIRSVPYRVRVRLARKRNDDEDAKEKLYTLVTY--VPVTSFKGLQTQNVDAE 119          
BLAST of DR403261 vs. ExPASy Swiss-Prot
Match: RL31_XENLA (60S ribosomal protein L31 OS=Xenopus laevis GN=rpl31 PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 2.917e-18
Identity = 42/96 (43.75%), Postives = 57/96 (59.38%), Query Frame = 2
Query:  191 QRLHGCTFKKKAPKAIKEIRKFAQKAMGTTDVRVDVKLNKQVWSXXXXXXXXXXXXXXXXXXNDEEDAKEEFYSLVTVAEIPPEGLKGLGTKVIDE 478
            +R+HG  FKK+AP+A+KEIRKFA K M T DVR+D +LNK VW+                  N++ED+  + Y+LVT   +P    KGL T  +DE
Sbjct:   31 KRIHGIGFKKRAPRALKEIRKFAVKEMRTPDVRIDTRLNKAVWAKGIRNVPYRIRVRLSRKRNEDEDSPNKLYTLVTY--VPVTNYKGLQTVNVDE 124          

HSP 2 Score: 31.187 bits (69), Expect = 2.917e-18
Identity = 13/21 (61.90%), Postives = 16/21 (76.19%), Query Frame = 3
Query:  129 EKAGKGRKEEVVTREYTINLH 191
            +K G+    EVVTREYTIN+H
Sbjct:   10 KKKGRSAINEVVTREYTINIH 30          
The following BLAST results are available for this feature:
BLAST of DR403261 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 30
Match NameE-valueIdentityDescription
RL31_PERFR7.654e-3372.4560S ribosomal protein L31 OS=Perilla frutescens GN... [more]
RL31_PICMA9.997e-3369.3960S ribosomal protein L31 OS=Picea mariana GN=RPL3... [more]
RL313_ARATH2.227e-3271.4360S ribosomal protein L31-3 OS=Arabidopsis thalian... [more]
RL312_ARATH6.480e-3269.3960S ribosomal protein L31-2 OS=Arabidopsis thalian... [more]
RL31_NICGU1.105e-3169.3960S ribosomal protein L31 OS=Nicotiana glutinosa G... [more]
RL311_ARATH4.200e-3169.3960S ribosomal protein L31-1 OS=Arabidopsis thalian... [more]
RL31_PANGI1.351e-2966.3360S ribosomal protein L31 OS=Panax ginseng GN=RPL3... [more]
RL31_CHLRE8.548e-2255.2160S ribosomal protein L31 OS=Chlamydomonas reinhar... [more]
RL31_CYAPA6.291e-1950.5260S ribosomal protein L31 OS=Cyanophora paradoxa G... [more]
RL31_XENLA2.917e-1843.7560S ribosomal protein L31 OS=Xenopus laevis GN=rpl... [more]

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Properties
Property NameValue
Genbank descriptionCSAF-PNP1244F22 Flavedo Mature Citrus sinensis cDNA clone CSAF-PNP1244F22 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR403261 ID=DR403261; Name=DR403261; organism=Citrus sinensis; type=EST; length=691bp
GGGGATTTTTGTGAAAAGAGAAACCCCCTATATTTATTGCTGTGGCGCTC
TAGGGTTTTGTTTTAGCAGCCGCAGACGCAGAGTGTAGAAGCTCGAGAGC
AGAAAAAGAAGAAGCAACAACAATGGTGGAGAAAGCTGGTAAAGGAAGAA
AAGAAGAGGTCGTCACTCGCGAATATACCATTAATCTCCACAACGCTTGC
ATGGCTGCACCTTCAAGAAGAAAGCTCCAAAAGCCATAAAGGAAATTAGG
AAGTTTGCTCAAAAAGCCATGGGGACAACTGATGTTAGGGTGGATGTGAA
GCTCAACAAGCAAGTGTGGAGCCGTGGTATCCGTAGTGTACCAAGGAGAA
TTCGTGTTCGTGTTGCACGGAAGAGAAACGATGAGGAAGATGCCAAAGAA
GAGTTCTACTCTCTCGTCACTGTTGCCGAGATCCCTCCAGAAGGACTCAA
GGGGTTGGGCACCAAGGTCATTGATGAGGAAGATTGAAGCAACCTTTCTG
TTTAGCTAAGGAACTCCAAATTTTGGCTATAATTTTATCTTATTCAGTTG
CTTTTTTGGTTTTGGATTTACTTTTTAGAACTGCCTTGGGCCAAAAAAGG
TTTCGTGAACGTATTGTGATTTATGCATTTACCCTGTTTAAGATTTCTGA
TACTTCATTCATAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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