DR403175

Overview
NameDR403175
Unique NameDR403175
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length660
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR403175 vs. ExPASy Swiss-Prot
Match: RS29_ARATH (40S ribosomal protein S29 OS=Arabidopsis thaliana GN=RPS29A PE=3 SV=2)

HSP 1 Score: 117.087 bits (292), Expect = 8.211e-26
Identity = 49/56 (87.50%), Postives = 51/56 (91.07%), Query Frame = 2
Query:   89 MGHSNVWNSHPKTYGPGSRACRVCGNPHAIIRKYGLMCCRQCFRSNAKEIGFVKYR 256
            MGHSNVWNSHPK YGPGSR CRVCGN H +IRKYGL CCRQCFRSNAKEIGF+KYR
Sbjct:    1 MGHSNVWNSHPKKYGPGSRLCRVCGNSHGLIRKYGLNCCRQCFRSNAKEIGFIKYR 56          
BLAST of DR403175 vs. ExPASy Swiss-Prot
Match: RS29_WHEAT (40S ribosomal protein S29 OS=Triticum aestivum GN=RPS29 PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 5.322e-25
Identity = 47/56 (83.93%), Postives = 51/56 (91.07%), Query Frame = 2
Query:   89 MGHSNVWNSHPKTYGPGSRACRVCGNPHAIIRKYGLMCCRQCFRSNAKEIGFVKYR 256
            MGHSNVWNSHPK YG GSR CRVCGN H +IRKYGLMCCRQCFRS+AK+IGF+KYR
Sbjct:    1 MGHSNVWNSHPKNYGAGSRVCRVCGNSHGLIRKYGLMCCRQCFRSDAKDIGFIKYR 56          
BLAST of DR403175 vs. ExPASy Swiss-Prot
Match: RS29_GRIJA (40S ribosomal protein S29 OS=Griffithsia japonica GN=RPS29 PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 5.699e-19
Identity = 36/56 (64.29%), Postives = 45/56 (80.36%), Query Frame = 2
Query:   89 MGHSNVWNSHPKTYGPGSRACRVCGNPHAIIRKYGLMCCRQCFRSNAKEIGFVKYR 256
            MGH N+W SHP+ YG GSR+C++CGN H +IRKY +  CRQCFR  AK+IGF+KYR
Sbjct:    1 MGHQNIWYSHPRKYGKGSRSCKICGNKHGLIRKYSMNICRQCFREYAKDIGFIKYR 56          
BLAST of DR403175 vs. ExPASy Swiss-Prot
Match: RS29_IXOSC (40S ribosomal protein S29 OS=Ixodes scapularis GN=RpS29 PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 5.335e-17
Identity = 36/54 (66.67%), Postives = 41/54 (75.93%), Query Frame = 2
Query:   89 MGHSNVWNSHPKTYGPGSRACRVCGNPHAIIRKYGLMCCRQCFRSNAKEIGFVK 250
            MGH N+W SHP+ YGPGSR CRVC N H +IRKYGL  CR+CFR  A +IGF K
Sbjct:    1 MGHENIWYSHPRKYGPGSRYCRVCANHHGLIRKYGLNICRRCFRQYAADIGFKK 54          
BLAST of DR403175 vs. ExPASy Swiss-Prot
Match: RS29_GUITH (40S ribosomal protein S29A OS=Guillardia theta GN=rps29A PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 6.967e-17
Identity = 34/56 (60.71%), Postives = 41/56 (73.21%), Query Frame = 2
Query:   89 MGHSNVWNSHPKTYGPGSRACRVCGNPHAIIRKYGLMCCRQCFRSNAKEIGFVKYR 256
            M H N+WN H +TYG GSR CR+CGN   +IRKYGL  CRQCFR  ++ +GF KYR
Sbjct:    1 MSHKNIWNKHSRTYGKGSRGCRICGNRSGLIRKYGLSICRQCFREKSQNLGFDKYR 56          
BLAST of DR403175 vs. ExPASy Swiss-Prot
Match: RS29_PLUXY (40S ribosomal protein S29 OS=Plutella xylostella GN=RpS29 PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.188e-16
Identity = 35/54 (64.81%), Postives = 41/54 (75.93%), Query Frame = 2
Query:   89 MGHSNVWNSHPKTYGPGSRACRVCGNPHAIIRKYGLMCCRQCFRSNAKEIGFVK 250
            MGH+N+W SHP+ YG GSR+CR C N H +IRKYGL  CRQCFR  A +IGF K
Sbjct:    1 MGHANIWYSHPRKYGQGSRSCRACSNRHGLIRKYGLNICRQCFREYANDIGFKK 54          
BLAST of DR403175 vs. ExPASy Swiss-Prot
Match: RS29_SPOFR (40S ribosomal protein S29 OS=Spodoptera frugiperda GN=RpS29 PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.552e-16
Identity = 35/54 (64.81%), Postives = 41/54 (75.93%), Query Frame = 2
Query:   89 MGHSNVWNSHPKTYGPGSRACRVCGNPHAIIRKYGLMCCRQCFRSNAKEIGFVK 250
            MGH+N+W SHP+ YG GSR+CR C N H +IRKYGL  CRQCFR  A +IGF K
Sbjct:    1 MGHANIWYSHPRRYGQGSRSCRACSNRHGLIRKYGLNICRQCFREYAHDIGFKK 54          
BLAST of DR403175 vs. ExPASy Swiss-Prot
Match: RS29_SCALT (40S ribosomal protein S29 OS=Scarabaeus laticollis GN=RpS29 PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.552e-16
Identity = 35/54 (64.81%), Postives = 40/54 (74.07%), Query Frame = 2
Query:   89 MGHSNVWNSHPKTYGPGSRACRVCGNPHAIIRKYGLMCCRQCFRSNAKEIGFVK 250
            MGH N+W SHP+ YG GSR+CR C N H +IRKYGL  CRQCFR  A +IGF K
Sbjct:    1 MGHQNIWYSHPRKYGQGSRSCRACSNRHGLIRKYGLNICRQCFREYANDIGFKK 54          
BLAST of DR403175 vs. ExPASy Swiss-Prot
Match: RS29_BOMMO (40S ribosomal protein S29 OS=Bombyx mori GN=RpS29 PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.647e-16
Identity = 35/54 (64.81%), Postives = 41/54 (75.93%), Query Frame = 2
Query:   89 MGHSNVWNSHPKTYGPGSRACRVCGNPHAIIRKYGLMCCRQCFRSNAKEIGFVK 250
            MGH+N+W SHP+ YG GSR+CR C N H +IRKYGL  CRQCFR  A +IGF K
Sbjct:    1 MGHANIWYSHPRRYGQGSRSCRSCSNRHGLIRKYGLNICRQCFREYAHDIGFKK 54          
BLAST of DR403175 vs. ExPASy Swiss-Prot
Match: RS29_ASHGO (40S ribosomal protein S29 OS=Ashbya gossypii GN=RPS29 PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 4.516e-16
Identity = 36/56 (64.29%), Postives = 40/56 (71.43%), Query Frame = 2
Query:   89 MGHSNVWNSHPKTYGPGSRACRVCGNPHAIIRKYGLMCCRQCFRSNAKEIGFVKYR 256
            M H NVW SHP+ YG GSR CRVC +   +IRKYGL  CRQCFR  A +IGF KYR
Sbjct:    1 MAHENVWFSHPRNYGKGSRQCRVCASHSGLIRKYGLNICRQCFREKANDIGFHKYR 56          
The following BLAST results are available for this feature:
BLAST of DR403175 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
RS29_ARATH8.211e-2687.5040S ribosomal protein S29 OS=Arabidopsis thaliana ... [more]
RS29_WHEAT5.322e-2583.9340S ribosomal protein S29 OS=Triticum aestivum GN=... [more]
RS29_GRIJA5.699e-1964.2940S ribosomal protein S29 OS=Griffithsia japonica ... [more]
RS29_IXOSC5.335e-1766.6740S ribosomal protein S29 OS=Ixodes scapularis GN=... [more]
RS29_GUITH6.967e-1760.7140S ribosomal protein S29A OS=Guillardia theta GN=... [more]
RS29_PLUXY1.188e-1664.8140S ribosomal protein S29 OS=Plutella xylostella G... [more]
RS29_SPOFR1.552e-1664.8140S ribosomal protein S29 OS=Spodoptera frugiperda... [more]
RS29_SCALT1.552e-1664.8140S ribosomal protein S29 OS=Scarabaeus laticollis... [more]
RS29_BOMMO2.647e-1664.8140S ribosomal protein S29 OS=Bombyx mori GN=RpS29 ... [more]
RS29_ASHGO4.516e-1664.2940S ribosomal protein S29 OS=Ashbya gossypii GN=RP... [more]

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Properties
Property NameValue
Genbank descriptionCSAF-PNP1244A19 Flavedo Mature Citrus sinensis cDNA clone CSAF-PNP1244A19 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR403175 ID=DR403175; Name=DR403175; organism=Citrus sinensis; type=EST; length=660bp
GGGGATTCCTCAGCAGATTCTATGGGTTTTACACAAGCTTAAGCGAACCG
GCTTTNNTCTTTGTCAAGGAAGGAGAAAACAATCAATCATGGGTCACTCC
AACGTTTGGAACTCTCACCCCAAGACTTACGGCCCCGGTTCTCGCGCTTG
CCGGGTTTGTGGGAATCCTCATGCAATAATCAGGAAGTATGGGCTCATGT
GCTGCAGACAATGCTTCCGTAGCAATGCCAAGGAGATTGGTTTTGTTAAG
TACCGCTAAATGATTAACATGTTGTCAACACCAGAAGGGGGGTTACCAGT
ACCATGCTGATTTTGTTTATCTGTGATACCTGTAGCGAATTTCTGTTTCT
CAAGGATTGTTAAGCGATGTTTTGTCTTAAATTGATTCAATGTTTGACAA
AGCAATTGTTGGACTAAGAATATCATTGATCATTCTTATTAAGGTTTAAT
CATTCTCACATTTTGGTGCTGAGTTATTCTTGTTCTTTCACCAGATCATC
AATCCAGCTCAGTGATTTTAAATTGGTTGAAATCAAGCCAACAGTGAATG
ATATTGATCATACACTGAGTGTGTCTTTTCCTCTGTTTCCTATCTTTTGG
TAAATATTCGAGTATTGAGCAATTTTTTCTGAAAAAAAAAAAAAAAAAAA
AAAAAAAAAA
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