DR403172

Overview
NameDR403172
Unique NameDR403172
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length597
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5271 contig Csv1_Contig5271:265..862. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DR403172 vs. ExPASy Swiss-Prot
Match: LEA5_CITSI (Late embryogenesis abundant protein Lea5 OS=Citrus sinensis GN=LEA5 PE=2 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.159e-25
Identity = 57/67 (85.07%), Postives = 59/67 (88.06%), Query Frame = 3
Query:  228 SSTLGNHISDCIMEKNDLTPAVREDSGASSAWAPDPITGYYRPENRAVEIDPAELREMLLNHKVRAH 428
            ++ LG      IMEKNDL PAVREDSGASSAWAPDPITGYYRPENRAVEIDPAELREMLLNHKVRAH
Sbjct:   31 AAPLGTISRTGIMEKNDLRPAVREDSGASSAWAPDPITGYYRPENRAVEIDPAELREMLLNHKVRAH 97          

HSP 2 Score: 75.485 bits (184), Expect = 2.294e-13
Identity = 39/40 (97.50%), Postives = 39/40 (97.50%), Query Frame = 1
Query:  139 MARSLFKAKLLLAPVADGISLSIGRRGYAAAAPLGTISRT 258
            MARSLFKAKLLLAPVADGISLSI RRGYAAAAPLGTISRT
Sbjct:    1 MARSLFKAKLLLAPVADGISLSISRRGYAAAAPLGTISRT 40          
BLAST of DR403172 vs. ExPASy Swiss-Prot
Match: LEA5D_GOSHI (Late embryogenesis abundant protein Lea5-D OS=Gossypium hirsutum GN=LEA5-D PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 5.045e-17
Identity = 36/59 (61.02%), Postives = 43/59 (72.88%), Query Frame = 3
Query:  264 MEKNDLTPAVREDSGA-----SSAWAPDPITGYYRPENRAVEIDPAELREMLLNHKVRA 425
            M K +   A++E S +     SSAWAPDP+TGYYRPEN   EID AELREMLLNH+VR+
Sbjct:   46 MGKVERRDAMKESSSSETRAYSSAWAPDPVTGYYRPENCGAEIDAAELREMLLNHRVRS 104          

HSP 2 Score: 36.5798 bits (83), Expect = 5.045e-17
Identity = 18/33 (54.55%), Postives = 23/33 (69.70%), Query Frame = 1
Query:  139 MARSLFKAKLLLAPVADGISLSIGRRGYAAAAP 237
            MARS+   KLL A + DG+ +SI RRGY+ A P
Sbjct:    1 MARSVSSFKLLGASIFDGLYVSISRRGYSGAPP 33          
BLAST of DR403172 vs. ExPASy Swiss-Prot
Match: LEA5A_GOSHI (Late embryogenesis abundant protein Lea5-A OS=Gossypium hirsutum GN=LEA5-A PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.366e-15
Identity = 34/59 (57.63%), Postives = 43/59 (72.88%), Query Frame = 3
Query:  264 MEKNDLTPAVREDSGA-----SSAWAPDPITGYYRPENRAVEIDPAELREMLLNHKVRA 425
            M K +   A++E S +     SSAWAPDP+TGYYRPEN   EID A+LREM+LNH+VR+
Sbjct:   46 MGKVERRYAMKESSSSETRAYSSAWAPDPVTGYYRPENCGAEIDAADLREMMLNHRVRS 104          

HSP 2 Score: 33.113 bits (74), Expect = 3.366e-15
Identity = 17/33 (51.52%), Postives = 21/33 (63.64%), Query Frame = 1
Query:  139 MARSLFKAKLLLAPVADGISLSIGRRGYAAAAP 237
            MARS+   K L A V D + +SI RRGY+ A P
Sbjct:    1 MARSVSSFKFLGASVFDALYVSISRRGYSGAPP 33          
The following BLAST results are available for this feature:
BLAST of DR403172 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
LEA5_CITSI1.159e-2585.07Late embryogenesis abundant protein Lea5 OS=Citrus... [more]
LEA5D_GOSHI5.045e-1761.02Late embryogenesis abundant protein Lea5-D OS=Goss... [more]
LEA5A_GOSHI3.366e-1557.63Late embryogenesis abundant protein Lea5-A OS=Goss... [more]
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Properties
Property NameValue
Genbank descriptionCSAF-PNP1244A16 Flavedo Mature Citrus sinensis cDNA clone CSAF-PNP1244A16 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR403172 ID=DR403172; Name=DR403172; organism=Citrus sinensis; type=EST; length=597bp
GGGGAAAGAGAGCGAGCCGCTAGCTTTTGCCTATAGCTACTGCAGGAGCA
GAATCTTTCTTCTTCTGTAGTAGCACTGTACAGAAACATCCCAGCTAGCT
ATCTTCATATCTATTAAGTTCTATAAGTAAATAAAACAATGGCCCGCTCT
CTCTTCAAAGCTAAGCTTCTTCTTGCTCCTGTTGCTGATGGCATCTCGCT
CTCCATTGGCAGGAGAGGATATGCTGCAGCAGCACCCTTGGGAACCATAT
CTCGGACTGTATCATGGAGAAAAATGATTTGACGCCTGCGGTGAGAGAGG
ATTCTGGGGCCTCTTCTGCCTGGGCCCCAGATCCCATCACTGGGTACTAC
AGGCCGGAGAATCGGGCGGTCGAGATTGATCCAGCAGAGCTTCGAGAGAT
GCTGTTGAACCACAAAGTCAGGGCACACTAGGGAGTGGTCGCGCATAGTA
GCAGATCCTTTGCTGTTAGCGGTGCTTTAACTTTTAAGTGATGTTGTTAC
AGTAGCAATTTTGACTCACTCTAAAGTCTTTGCTGTTGTTCTGATATCAA
CTGTTATTTACAACTTTTAATAAAAAAAAAAAAAAAAAAAAAAAAAA
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