DR403170

Overview
NameDR403170
Unique NameDR403170
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length683
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2810 contig Csv1_Contig2810:238..920. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DR403170 vs. ExPASy Swiss-Prot
Match: YF64_CAEEL (Uncharacterized protein R102.4 OS=Caenorhabditis elegans GN=R102.4 PE=2 SV=3)

HSP 1 Score: 150.984 bits (380), Expect = 5.518e-36
Identity = 79/162 (48.77%), Postives = 108/162 (66.67%), Query Frame = 1
Query:  196 TVDLRSDTVTKPTEAMRAAMASAEVDDDVLMHDPTAFRLETEMAKVMGKEAGLFVPSGTMGNLISVLVHCEIRGSEVIIGDNSHIHIYENGGISTIGGVHPRTVKNNQDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGRCLSVEYTDSVGEIA 681
            ++DLRSDTVT P+  MR AMA A V DDV   D T  RLE   A++ GKEAGLFV SGTMGNL++++ HC+ RG E+I+G  +HIH +E G  +   G+   T++   DGTMD++ IE AIR    +   P ++LIC+ENTH   GG+ L +E+  SV ++A
Sbjct:   66 SIDLRSDTVTVPSVEMRRAMAEAIVGDDVYGEDTTTNRLEQRCAELFGKEAGLFVTSGTMGNLLAIMAHCQ-RGEEIIVGRYNHIHRWEQGNYAQFAGISATTLEVKPDGTMDLNDIEQAIR--VKDCHMPASKLICIENTHNYTGGKALPIEWMRSVKQLA 224          
BLAST of DR403170 vs. ExPASy Swiss-Prot
Match: LTAA_AERJA (L-allo-threonine aldolase OS=Aeromonas jandaei GN=ltaA PE=1 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.246e-29
Identity = 72/162 (44.44%), Postives = 100/162 (61.73%), Query Frame = 1
Query:  193 RTVDLRSDTVTKPTEAMRAAMASAEVDDDVLMHDPTAFRLETEMAKVMGKEAGLFVPSGTMGNLISVLVHCEIRGSEVIIGDNSHIHIYENGGISTIGGVHPRTVKNNQDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGRCLSVEYTDSVGEI 678
            R +DLRSDTVT+PT+AMR  M  AEV DDV   DP    LE   A ++GKEA LFVPSGTM NL++V+ HC+ RG   ++G  +HI+ YE  G + +G V  + V    DG++ +  + AAI     ++ +  TRL+CLENTH    G+ L + Y   + E+
Sbjct:    2 RYIDLRSDTVTQPTDAMRQCMLHAEVGDDVYGEDPGVNALEAYGADLLGKEAALFVPSGTMSNLLAVMSHCQ-RGEGAVLGSAAHIYRYEAQGSAVLGSVALQPVPMQADGSLALADVRAAI--APDDVHFTPTRLVCLENTH---NGKVLPLPYLREMREL 157          
BLAST of DR403170 vs. ExPASy Swiss-Prot
Match: LTAE_ECOLI (Low specificity L-threonine aldolase OS=Escherichia coli (strain K12) GN=ltaE PE=1 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 2.483e-28
Identity = 66/159 (41.51%), Postives = 99/159 (62.26%), Query Frame = 1
Query:  199 VDLRSDTVTKPTEAMRAAMASAEVDDDVLMHDPTAFRLETEMAKVMGKEAGLFVPSGTMGNLISVLVHCEIRGSEVIIGDNSHIHIYENGGISTIGGVHPRTVKNNQDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGRCLSVEYTDSVGE 675
            +DLRSDTVT+P+ AM  AM +A V DDV   DPT   L+   A++ GKEA +F+P+GT  NL+++L HCE RG E I+G  +H +++E GG + +G + P+ +    DGT+ +D  + A++    +I +  T+L+ LENTH    G+ L  EY     E
Sbjct:    2 IDLRSDTVTRPSRAMLEAMMAAPVGDDVYGDDPTVNALQDYAAELSGKEAAIFLPTGTQANLVALLSHCE-RGEEYIVGQAAHNYLFEAGGAAVLGSIQPQPIDAAADGTLPLD--KVAMKIKPDDIHFARTKLLSLENTH---NGKVLPREYLKEAWE 154          
BLAST of DR403170 vs. ExPASy Swiss-Prot
Match: LTAE_ECO57 (Low specificity L-threonine aldolase OS=Escherichia coli O157:H7 GN=ltaE PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 2.483e-28
Identity = 66/159 (41.51%), Postives = 99/159 (62.26%), Query Frame = 1
Query:  199 VDLRSDTVTKPTEAMRAAMASAEVDDDVLMHDPTAFRLETEMAKVMGKEAGLFVPSGTMGNLISVLVHCEIRGSEVIIGDNSHIHIYENGGISTIGGVHPRTVKNNQDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGRCLSVEYTDSVGE 675
            +DLRSDTVT+P+ AM  AM +A V DDV   DPT   L+   A++ GKEA +F+P+GT  NL+++L HCE RG E I+G  +H +++E GG + +G + P+ +    DGT+ +D  + A++    +I +  T+L+ LENTH    G+ L  EY     E
Sbjct:    2 IDLRSDTVTRPSRAMLEAMMAAPVGDDVYGDDPTVNALQDYAAELSGKEAAIFLPTGTQANLVALLSHCE-RGEEYIVGQAAHNYLFEAGGAAVLGSIQPQPIDAAADGTLPLD--KVAMKIKPDDIHFARTKLLSLENTH---NGKVLPREYLKDAWE 154          
BLAST of DR403170 vs. ExPASy Swiss-Prot
Match: GLY1_SCHPO (Probable threonine aldolase OS=Schizosaccharomyces pombe GN=gly1 PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.111e-15
Identity = 56/141 (39.72%), Postives = 74/141 (52.48%), Query Frame = 1
Query:  202 DLRSDTVTKPTEAMRAAMASAEVDDDVLMHDPTAFRLETEMAKVMGKEAGLFVPSGTMGNLISVLVHCEIRGSEVIIGDNSHIHIYENG--GISTIGGVHPRTVKNNQDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENT 618
            D RSDT+T PT+ MR  M  A   D V   D    +LE  +AK+ GKEA LFV SGT GN + +  H       +I  D +HI+ +E G  G+ T   V P + KNN   T + ++    I     +I +  T LICLENT
Sbjct:   30 DFRSDTLTVPTDEMRRIMYEASDGDCVYEEDEDTRKLEVYVAKLTGKEAALFVTSGTQGNQLCIRSHLHQPPHSIICDDRAHIYNWEAGAIGLFTQAIVRPISPKNNVYITAE-EIENKLILG--NDIHFSPTGLICLENT 167          
BLAST of DR403170 vs. ExPASy Swiss-Prot
Match: GLY1_YEAST (Low specificity L-threonine aldolase OS=Saccharomyces cerevisiae GN=GLY1 PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 9.159e-15
Identity = 49/146 (33.56%), Postives = 73/146 (50.00%), Query Frame = 1
Query:  181 KMVTRTVDLRSDTVTKPTEAMRAAMASAEVDDDVLMHDPTAFRLETEMAKVMGKEAGLFVPSGTMGNLISVLVHCEIRGSEVIIGDNSHIHIYENGGISTIGGVHPRTVKNNQDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENT 618
            K +T   DLRSDT T PT  M  A   A + D V   D    RLE  +A++ GKEAGLF  SGT+ N I++  H       ++    +H++ +E  G++ +       V  +    + ++ I++      G+I    TRLI LENT
Sbjct:    9 KYITAANDLRSDTFTTPTAEMMEAALEASIGDAVYGEDVDTVRLEQTVARMAGKEAGLFCVSGTLSNQIAIRTHLMQPPYSILCDYRAHVYTHEAAGLAILSQAMVVPVVPSNGDYLTLEDIKSHYVPDDGDIHGAPTRLISLENT 154          
BLAST of DR403170 vs. ExPASy Swiss-Prot
Match: GLY1_CANAL (Threonine aldolase OS=Candida albicans GN=GLY1 PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.727e-13
Identity = 49/142 (34.51%), Postives = 72/142 (50.70%), Query Frame = 1
Query:  202 DLRSDTVTKPTEAM-RAAMASAEVDDDVLMHDPTAFRLETEMAKVMGKEAGLFVPSGTMGNLISVLVHCEIRGSEVIIGDNSHIHIYENGGISTIGG--VHPRTVKNNQDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENT 618
            + RSDT T PT AM      +A   D V   D T  RLE++M ++ GK A LF  SGTM N I +  +       ++    +H+ ++E GG++T+    VHP    N    T + D++     D  G+I    T++I LENT
Sbjct:   14 EFRSDTFTVPTRAMVEDGFMNATFGDSVYQEDETTLRLESKMCEITGKPAALFCVSGTMSNQIGLRANLVQPPYSILCDYRAHVFLHEAGGLATLSQAMVHPVRPSNGNYLTFE-DVLGNVTYDDDGDIHAAPTKVISLENT 154          
BLAST of DR403170 vs. ExPASy Swiss-Prot
Match: GLY1_ASHGO (Threonine aldolase OS=Ashbya gossypii GN=GLY1 PE=3 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 5.557e-12
Identity = 42/139 (30.22%), Postives = 68/139 (48.92%), Query Frame = 1
Query:  202 DLRSDTVTKPTEAMRAAMASAEVDDDVLMHDPTAFRLETEMAKVMGKEAGLFVPSGTMGNLISVLVHCEIRGSEVIIGDNSHIHIYENGGISTIGGVHPRTVKNNQDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENT 618
            D RSDT T PT  M  A  +A + D V   D    +LE  +AK+ G EAG+F  SGT+ N I++  H       ++    +H++ +E  G++ +       V  +    + ++ I+       G+I    T++I LENT
Sbjct:   17 DFRSDTFTTPTREMIEAALTATIGDAVYQEDIDTLKLEQHVAKLAGMEAGMFCVSGTLSNQIALRTHLTQPPYSILCDYRAHVYTHEAAGLAILSQAMVTPVIPSNGNYLTLEDIKKHYIPDDGDIHGAPTKVISLENT 155          
BLAST of DR403170 vs. ExPASy Swiss-Prot
Match: TOXG_COCCA (Alanine racemase TOXG OS=Cochliobolus carbonum GN=TOXG PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.617e-11
Identity = 43/140 (30.71%), Postives = 71/140 (50.71%), Query Frame = 1
Query:  202 DLRSDTVTKPTEAMRAAMASAEVDDDVLMHDPTAFRLETEMAKVMGKEAGLFVPSGTMGNLISVLVHCEIRGSEVIIGDNSHIHIYENGGISTIGGVHPRTVKNNQDGTMDI-DLIEAAIRDPKGEIVYPTTRLICLENT 618
            D RSD +T+P+  M +A+    + DDV   D T    E  +A++ G+E G+FV +GTM N + +      R   +++   SH   YE GG S + G   + V+ +    + + DL E AI     ++    T ++ +ENT
Sbjct:   39 DFRSDVITRPSLRMLSAVLKTTLGDDVFREDLTTAHFEAHVAEISGREEGMFVITGTMANQLCLHALVSTRPCGILLSSESHAIHYEAGGSSMLSGAMLQPVQPSNGKYLRVEDLEEHAIL--TDDVHKCPTSIVSMENT 176          
The following BLAST results are available for this feature:
BLAST of DR403170 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
YF64_CAEEL5.518e-3648.77Uncharacterized protein R102.4 OS=Caenorhabditis e... [more]
LTAA_AERJA2.246e-2944.44L-allo-threonine aldolase OS=Aeromonas jandaei GN=... [more]
LTAE_ECOLI2.483e-2841.51Low specificity L-threonine aldolase OS=Escherichi... [more]
LTAE_ECO572.483e-2841.51Low specificity L-threonine aldolase OS=Escherichi... [more]
GLY1_SCHPO4.111e-1539.72Probable threonine aldolase OS=Schizosaccharomyces... [more]
GLY1_YEAST9.159e-1533.56Low specificity L-threonine aldolase OS=Saccharomy... [more]
GLY1_CANAL1.727e-1334.51Threonine aldolase OS=Candida albicans GN=GLY1 PE=... [more]
GLY1_ASHGO5.557e-1230.22Threonine aldolase OS=Ashbya gossypii GN=GLY1 PE=3... [more]
TOXG_COCCA1.617e-1130.71Alanine racemase TOXG OS=Cochliobolus carbonum GN=... [more]
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Properties
Property NameValue
Genbank descriptionCSAF-PNP1244A12 Flavedo Mature Citrus sinensis cDNA clone CSAF-PNP1244A12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR403170 ID=DR403170; Name=DR403170; organism=Citrus sinensis; type=EST; length=683bp
GGGGGGAGTTGTGTTTAAAGATTCTTGGGTTTCTTTTGTTATTCGAAGGG
GGTGCTGTTAATAAGTGCTATATAGTCCAAAGATTCTTCAGCTGCTTTCA
GTGAATATAAGCAACGGGGTGGCAAAAAGAGAGATTTATTCATTTTTTTT
AAGTATTTTCATCTGGGAACAGTGTGAGTGAAAATGGTAACTAGAACTGT
GGATCTCCGGTCGGACACCGTCACCAAACCCACTGAAGCAATGAGGGCTG
CTATGGCAAGTGCTGAGGTTGACGATGATGTATTAATGCACGATCCGACT
GCATTCCGCTTAGAAACAGAAATGGCGAAGGTTATGGGCAAGGAAGCTGG
TCTGTTTGTGCCGTCAGGCACAATGGGTAACCTCATTAGTGTGCTTGTTC
ATTGTGAAATTAGGGGAAGTGAAGTCATTATTGGAGACAATTCTCATATT
CATATTTACGAGAATGGAGGCATTTCAACAATTGGAGGGGTGCATCCAAG
GACTGTCAAGAACAACCAAGATGGAACAATGGATATTGATTTAATTGAAG
CTGCCATTAGAGATCCGAAAGGCGAGATTGTGTACCCGACAACTCGACTT
ATCTGTTTGGAGAATACGCATGCAAACTGCGGTGGTAGATGCCTTTCTGT
AGAATACACGGACAGTGTTGGAGAGATTGCCAA
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