DN621642

Overview
NameDN621642
Unique NameDN621642
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length214
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2889 contig Csv1_Contig2889:141..354. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN621642 vs. ExPASy Swiss-Prot
Match: HSP71_ARATH (Heat shock cognate 70 kDa protein 1 OS=Arabidopsis thaliana GN=HSC70-1 PE=1 SV=3)

HSP 1 Score: 130.183 bits (326), Expect = 3.212e-30
Identity = 63/70 (90.00%), Postives = 67/70 (95.71%), Query Frame = 3
Query:    3 NDKGRLSKDEIEKMVQEAEKYKAEDEEHKKKVEAKNALENYAYNMRNTVKDEKIGSKLDPADKKKIEDAI 212
            NDKGRLSKDEIEKMVQEAEKYK+EDEEHKKKVEAKNALENYAYNMRNT++DEKIG KL  ADKKKIED+I
Sbjct:  511 NDKGRLSKDEIEKMVQEAEKYKSEDEEHKKKVEAKNALENYAYNMRNTIQDEKIGEKLPAADKKKIEDSI 580          
BLAST of DN621642 vs. ExPASy Swiss-Prot
Match: HSP7E_SPIOL (Chloroplast envelope membrane 70 kDa heat shock-related protein OS=Spinacia oleracea GN=SCE70 PE=1 SV=3)

HSP 1 Score: 127.487 bits (319), Expect = 2.082e-29
Identity = 62/70 (88.57%), Postives = 67/70 (95.71%), Query Frame = 3
Query:    3 NDKGRLSKDEIEKMVQEAEKYKAEDEEHKKKVEAKNALENYAYNMRNTVKDEKIGSKLDPADKKKIEDAI 212
            NDKGRLSK+EIEKMVQEAEKYK+EDEEHKKKVE+KNALENYAYNMRN VKDEKIG+KL  ADKKKIE+AI
Sbjct:  511 NDKGRLSKEEIEKMVQEAEKYKSEDEEHKKKVESKNALENYAYNMRNIVKDEKIGAKLSEADKKKIEEAI 580          
BLAST of DN621642 vs. ExPASy Swiss-Prot
Match: HSP72_ARATH (Heat shock cognate 70 kDa protein 2 OS=Arabidopsis thaliana GN=HSC70-2 PE=2 SV=2)

HSP 1 Score: 127.487 bits (319), Expect = 2.082e-29
Identity = 60/70 (85.71%), Postives = 67/70 (95.71%), Query Frame = 3
Query:    3 NDKGRLSKDEIEKMVQEAEKYKAEDEEHKKKVEAKNALENYAYNMRNTVKDEKIGSKLDPADKKKIEDAI 212
            NDKGRLSK++IEKMVQEAEKYK+EDEEHKKKVEAKNALENYAYNMRNT++DEKIG KL  ADKKK+ED+I
Sbjct:  511 NDKGRLSKEDIEKMVQEAEKYKSEDEEHKKKVEAKNALENYAYNMRNTIRDEKIGEKLPAADKKKVEDSI 580          
BLAST of DN621642 vs. ExPASy Swiss-Prot
Match: HSP71_SOLLC (Heat shock cognate 70 kDa protein 1 OS=Solanum lycopersicum GN=HSC-I PE=2 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 3.551e-29
Identity = 63/70 (90.00%), Postives = 66/70 (94.29%), Query Frame = 3
Query:    3 NDKGRLSKDEIEKMVQEAEKYKAEDEEHKKKVEAKNALENYAYNMRNTVKDEKIGSKLDPADKKKIEDAI 212
            NDKGRLSK+EIEKMVQEAEKYKAEDEE KKKVEAKN+LENYAYNMRNTVKDEKIGSKL   DKKKIEDA+
Sbjct:  513 NDKGRLSKEEIEKMVQEAEKYKAEDEELKKKVEAKNSLENYAYNMRNTVKDEKIGSKLSSDDKKKIEDAV 582          
BLAST of DN621642 vs. ExPASy Swiss-Prot
Match: HSP73_ARATH (Heat shock cognate 70 kDa protein 3 OS=Arabidopsis thaliana GN=HSC70-3 PE=1 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 4.637e-29
Identity = 61/70 (87.14%), Postives = 66/70 (94.29%), Query Frame = 3
Query:    3 NDKGRLSKDEIEKMVQEAEKYKAEDEEHKKKVEAKNALENYAYNMRNTVKDEKIGSKLDPADKKKIEDAI 212
            NDKGRLSKDEIEKMVQEAEKYK+EDEEHKKKV+AKNALENYAYNMRNT++DEKIG KL   DKKKIED+I
Sbjct:  511 NDKGRLSKDEIEKMVQEAEKYKSEDEEHKKKVDAKNALENYAYNMRNTIRDEKIGEKLAGDDKKKIEDSI 580          
BLAST of DN621642 vs. ExPASy Swiss-Prot
Match: HSP72_SOLLC (Heat shock cognate 70 kDa protein 2 OS=Solanum lycopersicum GN=HSC-2 PE=2 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 1.033e-28
Identity = 61/70 (87.14%), Postives = 65/70 (92.86%), Query Frame = 3
Query:    3 NDKGRLSKDEIEKMVQEAEKYKAEDEEHKKKVEAKNALENYAYNMRNTVKDEKIGSKLDPADKKKIEDAI 212
            NDKGRLSK+EIEKMVQEAEKYK+EDEEHKKKVEAKNALENYAYNMRNT+KDEKI SKL   D+ KIEDAI
Sbjct:  511 NDKGRLSKEEIEKMVQEAEKYKSEDEEHKKKVEAKNALENYAYNMRNTIKDEKIASKLSADDRTKIEDAI 580          
BLAST of DN621642 vs. ExPASy Swiss-Prot
Match: HSP70_MAIZE (Heat shock 70 kDa protein OS=Zea mays GN=HSP70 PE=3 SV=2)

HSP 1 Score: 122.865 bits (307), Expect = 5.127e-28
Identity = 60/70 (85.71%), Postives = 65/70 (92.86%), Query Frame = 3
Query:    3 NDKGRLSKDEIEKMVQEAEKYKAEDEEHKKKVEAKNALENYAYNMRNTVKDEKIGSKLDPADKKKIEDAI 212
            NDKGRLSK+EIEKMVQEAEKYKAEDEE KKKV+AKNALENYAYNMRNT+KD+KI SKL   DKKKIEDA+
Sbjct:  507 NDKGRLSKEEIEKMVQEAEKYKAEDEEVKKKVDAKNALENYAYNMRNTIKDDKIASKLPAEDKKKIEDAV 576          
BLAST of DN621642 vs. ExPASy Swiss-Prot
Match: HSP7C_PETHY (Heat shock cognate 70 kDa protein OS=Petunia hybrida GN=HSP70 PE=2 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 1.142e-27
Identity = 59/70 (84.29%), Postives = 66/70 (94.29%), Query Frame = 3
Query:    3 NDKGRLSKDEIEKMVQEAEKYKAEDEEHKKKVEAKNALENYAYNMRNTVKDEKIGSKLDPADKKKIEDAI 212
            NDKGRLSK+EIE+MVQEAEKYK+EDEE KKKVEAKNALENYAYNMRNT+KD+KI S+L  ADKK+IEDAI
Sbjct:  511 NDKGRLSKEEIERMVQEAEKYKSEDEELKKKVEAKNALENYAYNMRNTIKDDKINSQLSAADKKRIEDAI 580          
BLAST of DN621642 vs. ExPASy Swiss-Prot
Match: HSP70_SOYBN (Heat shock 70 kDa protein OS=Glycine max GN=HSP70 PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 1.263e-26
Identity = 56/70 (80.00%), Postives = 65/70 (92.86%), Query Frame = 3
Query:    3 NDKGRLSKDEIEKMVQEAEKYKAEDEEHKKKVEAKNALENYAYNMRNTVKDEKIGSKLDPADKKKIEDAI 212
            NDKGRLSK+EIEKMV++AE+YKAEDEE KKKVEAKN+LENYAYNMRNT+KDEKIG KL P +K+KIE A+
Sbjct:  510 NDKGRLSKEEIEKMVKDAERYKAEDEEVKKKVEAKNSLENYAYNMRNTIKDEKIGGKLSPDEKQKIEKAV 579          
BLAST of DN621642 vs. ExPASy Swiss-Prot
Match: HSP70_DAUCA (Heat shock 70 kDa protein OS=Daucus carota GN=HSP70 PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 2.154e-26
Identity = 57/70 (81.43%), Postives = 63/70 (90.00%), Query Frame = 3
Query:    3 NDKGRLSKDEIEKMVQEAEKYKAEDEEHKKKVEAKNALENYAYNMRNTVKDEKIGSKLDPADKKKIEDAI 212
            ND GRLSKDEIEK+V+EAEKYKAEDEE KKKVEAKNALENYAYNMRNT+KD+KI  KLD  DK+KIE A+
Sbjct:  513 NDNGRLSKDEIEKLVKEAEKYKAEDEEVKKKVEAKNALENYAYNMRNTIKDDKIPGKLDAGDKEKIETAV 582          
The following BLAST results are available for this feature:
BLAST of DN621642 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 168
Match NameE-valueIdentityDescription
HSP71_ARATH3.212e-3090.00Heat shock cognate 70 kDa protein 1 OS=Arabidopsis... [more]
HSP7E_SPIOL2.082e-2988.57Chloroplast envelope membrane 70 kDa heat shock-re... [more]
HSP72_ARATH2.082e-2985.71Heat shock cognate 70 kDa protein 2 OS=Arabidopsis... [more]
HSP71_SOLLC3.551e-2990.00Heat shock cognate 70 kDa protein 1 OS=Solanum lyc... [more]
HSP73_ARATH4.637e-2987.14Heat shock cognate 70 kDa protein 3 OS=Arabidopsis... [more]
HSP72_SOLLC1.033e-2887.14Heat shock cognate 70 kDa protein 2 OS=Solanum lyc... [more]
HSP70_MAIZE5.127e-2885.71Heat shock 70 kDa protein OS=Zea mays GN=HSP70 PE=... [more]
HSP7C_PETHY1.142e-2784.29Heat shock cognate 70 kDa protein OS=Petunia hybri... [more]
HSP70_SOYBN1.263e-2680.00Heat shock 70 kDa protein OS=Glycine max GN=HSP70 ... [more]
HSP70_DAUCA2.154e-2681.43Heat shock 70 kDa protein OS=Daucus carota GN=HSP7... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS11_06P21_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0006P21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN621642 ID=DN621642; Name=DN621642; organism=Citrus sinensis; type=EST; length=214bp
CCAACGACAAGGGTAGATTGTCAAAGGATGAAATTGAGAAGATGGTTCAA
GAGGCCGAGAAGTACAAGGCTGAAGATGAGGAGCACAAGAAGAAGGTCGA
GGCCAAGAATGCCTTGGAAAACTATGCCTACAATATGAGGAACACTGTCA
AGGACGAGAAGATCGGCTCCAAACTTGATCCAGCTGACAAGAAGAAGATT
GAGGATGCCATTGA
back to top