CX046765

Overview
NameCX046765
Unique NameCX046765
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length780
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig646 contig Csv1_Contig646:155..934. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX046765 vs. ExPASy Swiss-Prot
Match: RL281_ARATH (60S ribosomal protein L28-1 OS=Arabidopsis thaliana GN=RPL28A PE=1 SV=1)

HSP 1 Score: 222.631 bits (566), Expect = 1.869e-57
Identity = 108/143 (75.52%), Postives = 126/143 (88.11%), Query Frame = 3
Query:   54 MATVPGQLIWEIVKKNNCFLVKQFGRGNASVEFSKEPNNLYNLNSFKHSGLANRKTVTIQPGGKDLSVVLATAKTKKQNKPASLLHKSTMRKEFPRMAKAVVNQVADNYYRPDLKKAALARLSAVNRSLKVSKSGVKKRNRQA 482
            MATVPGQLIWEIVK NNCFLVKQFGRGN+ V+FSKE NNL N++S+KHSGLAN+KTVTIQ   KD +VVLAT KTKKQNKP   ++KS ++KEFPRM+KAV NQV DNYYRPDLKKAALARLSA+++ L+V+KSG K+RNRQA
Sbjct:    1 MATVPGQLIWEIVKNNNCFLVKQFGRGNSKVQFSKETNNLTNVHSYKHSGLANKKTVTIQAADKDQAVVLATTKTKKQNKPKLSVNKSILKKEFPRMSKAVANQVVDNYYRPDLKKAALARLSAISKGLRVAKSGAKQRNRQA 143          
BLAST of CX046765 vs. ExPASy Swiss-Prot
Match: RL282_ARATH (60S ribosomal protein L28-2 OS=Arabidopsis thaliana GN=RPL28C PE=2 SV=1)

HSP 1 Score: 221.861 bits (564), Expect = 3.189e-57
Identity = 107/143 (74.83%), Postives = 124/143 (86.71%), Query Frame = 3
Query:   54 MATVPGQLIWEIVKKNNCFLVKQFGRGNASVEFSKEPNNLYNLNSFKHSGLANRKTVTIQPGGKDLSVVLATAKTKKQNKPASLLHKSTMRKEFPRMAKAVVNQVADNYYRPDLKKAALARLSAVNRSLKVSKSGVKKRNRQA 482
            MATVPGQLIWEIVK+NNCFLVKQFGRGNA V+FSKE NNL N+NS+KHSGLAN+KTVTIQ  GKD  VVL T KTK+QNKP   ++KS ++KEF RM+K V NQV DNYYRPDLKKAALARLSA+++ L+V+KSG K+RNRQA
Sbjct:    1 MATVPGQLIWEIVKRNNCFLVKQFGRGNAKVQFSKESNNLVNINSYKHSGLANKKTVTIQAAGKDQGVVLGTTKTKRQNKPKLSVNKSILKKEFSRMSKVVANQVVDNYYRPDLKKAALARLSAISKGLRVAKSGPKRRNRQA 143          
BLAST of CX046765 vs. ExPASy Swiss-Prot
Match: RL28_HUMAN (60S ribosomal protein L28 OS=Homo sapiens GN=RPL28 PE=1 SV=3)

HSP 1 Score: 82.0333 bits (201), Expect = 3.943e-15
Identity = 48/138 (34.78%), Postives = 77/138 (55.80%), Query Frame = 3
Query:   75 LIWEIVKKNNCFLVKQFGRGNASVEFSKEPNNLYNLNSFKHSGLANRKTVTIQPGGKDLSVVLATAKTKKQNKPASLLHKSTMRKEFPRMAKAVVNQVADNYYRPDLKKAALARLSAVNRSLKVSKSGVKKRNRQATK 488
            L W +V+  + FL+K+  +      +S EPNNL   NSF+++GL +RKTV ++P      VV+   +   Q KPA+   ++T+ K       ++ + +  N YRPDL+ AA+ R SA+ RS K     VK++  + TK
Sbjct:    5 LQWMVVRNCSSFLIKRNKQ-----TYSTEPNNLKARNSFRYNGLIHRKTVGVEPAADGKGVVVVIKRRSGQRKPATSYVRTTINKNARATLSSIRHMIRKNKYRPDLRMAAIRRASAILRSQKPVM--VKRKRTRPTK 135          
BLAST of CX046765 vs. ExPASy Swiss-Prot
Match: RL28_MOUSE (60S ribosomal protein L28 OS=Mus musculus GN=Rpl28 PE=1 SV=2)

HSP 1 Score: 81.6481 bits (200), Expect = 5.150e-15
Identity = 48/138 (34.78%), Postives = 77/138 (55.80%), Query Frame = 3
Query:   75 LIWEIVKKNNCFLVKQFGRGNASVEFSKEPNNLYNLNSFKHSGLANRKTVTIQPGGKDLSVVLATAKTKKQNKPASLLHKSTMRKEFPRMAKAVVNQVADNYYRPDLKKAALARLSAVNRSLKVSKSGVKKRNRQATK 488
            L W +V+  + FL+K+  +      +S EPNNL   NSF+++GL +RKTV ++P      VV+   +   Q KPA+   ++T+ K       ++ + +  N YRPDL+ AA+ R SA+ RS K     VK++  + TK
Sbjct:    5 LQWMVVRNCSSFLIKRNKQ-----TYSTEPNNLKARNSFRYNGLIHRKTVGVEPAADGKGVVVVMKRRSGQRKPATSYVRTTINKNARATLSSIRHMIRKNKYRPDLRMAAIRRASAILRSQK--PVVVKRKRTRPTK 135          
BLAST of CX046765 vs. ExPASy Swiss-Prot
Match: RL28_SPOFR (60S ribosomal protein L28 OS=Spodoptera frugiperda GN=RpL28 PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 6.726e-15
Identity = 54/133 (40.60%), Postives = 76/133 (57.14%), Query Frame = 3
Query:   75 LIWEIVKKNNCFLVKQFGRGNASVEFSKEPNNLYNLNSFKHSGLANRKTVTI--QPGGKDLSVVLATAKTKKQNKPASLLHKSTMRKEFPRMAKAVVNQV----ADNYYRPDLKKAALARLSAVNRSLKVSKS 455
            L W I++ NN FLVK   + N    FSKEPNN+ NLNS++++GL  +K V +   P  K  +VV    K K  NKPA    K+ +R++F   A+  + +V      N+YR DL KA L R SA+ RS +  K+
Sbjct:    5 LNWMIIRNNNAFLVK---KRNIKKPFSKEPNNVTNLNSYRYNGLIQKKAVGVVENPDRKGFTVVY--KKAKATNKPA----KNAVRRQFKAGARRSLYKVKRLLKANHYRTDLSKATLRRASAILRSQRPIKA 128          
BLAST of CX046765 vs. ExPASy Swiss-Prot
Match: RL28_BOVIN (60S ribosomal protein L28 OS=Bos taurus GN=RPL28 PE=2 SV=3)

HSP 1 Score: 81.2629 bits (199), Expect = 6.726e-15
Identity = 48/138 (34.78%), Postives = 77/138 (55.80%), Query Frame = 3
Query:   75 LIWEIVKKNNCFLVKQFGRGNASVEFSKEPNNLYNLNSFKHSGLANRKTVTIQPGGKDLSVVLATAKTKKQNKPASLLHKSTMRKEFPRMAKAVVNQVADNYYRPDLKKAALARLSAVNRSLKVSKSGVKKRNRQATK 488
            L W +V+  + FL+K+  +      +S EPNNL   NSF+++GL +RKTV ++P      VV+   +   Q KPA+   ++T+ K       ++ + +  N YRPDL+ AA+ R SA+ RS K     VK++  + TK
Sbjct:    5 LQWMVVRNCSSFLIKRNKQ-----TYSTEPNNLKARNSFRYNGLIHRKTVGVEPAADGKGVVVVMKRRSGQRKPATSYVRTTINKNARATLSSIRHMIRKNKYRPDLRMAAIRRASAILRSQKPVM--VKRKPSRPTK 135          
BLAST of CX046765 vs. ExPASy Swiss-Prot
Match: RL28_RAT (60S ribosomal protein L28 OS=Rattus norvegicus GN=Rpl28 PE=1 SV=4)

HSP 1 Score: 77.0258 bits (188), Expect = 1.268e-13
Identity = 47/138 (34.06%), Postives = 76/138 (55.07%), Query Frame = 3
Query:   75 LIWEIVKKNNCFLVKQFGRGNASVEFSKEPNNLYNLNSFKHSGLANRKTVTIQPGGKDLSVVLATAKTKKQNKPASLLHKSTMRKEFPRMAKAVVNQVADNYYRPDLKKAALARLSAVNRSLKVSKSGVKKRNRQATK 488
            L W +V+  + FL+K+  +      +S EPNNL   NSF+++GL +RKTV ++       VV+   +   Q KPA+   ++T+ K       ++ + +  N YRPDL+ AA+ R SA+ RS K     VK++  + TK
Sbjct:    5 LQWMVVRNCSSFLIKRNKQ-----TYSTEPNNLKARNSFRYNGLIHRKTVGVEAWPDGKGVVVVMKRRSGQRKPATSYVRTTINKNARATLSSIRHMIRKNKYRPDLRMAAIRRASAILRSQK--PVVVKRKRTRPTK 135          
BLAST of CX046765 vs. ExPASy Swiss-Prot
Match: RL28_DROME (60S ribosomal protein L28 OS=Drosophila melanogaster GN=RpL28 PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 6.295e-13
Identity = 53/151 (35.10%), Postives = 78/151 (51.66%), Query Frame = 3
Query:   54 MATVPGQLIWEIVKKNNCFLVKQFGRGNASVEFSKEPNNLYNLNSFKHSGLANRKTVTIQPGGKDLSVVLATAKTKKQNKPASLLHKSTMRKEFP----RMAKAVVNQVADNYYRPDLKKAALARLSAVNRSLKVSKSGVKKRNRQATKVP 494
            MAT    L W I++ NN FL+K   + +    FS EPNNL +++S+++SG+ ++KT+ + P            K K   +PA    K+T+R +F     R  K + N +  + YR DL +AAL R SAV RS K +    KK      K P
Sbjct:    1 MAT-SSHLNWLIIRNNNAFLLK---KRDVKKPFSTEPNNLASVSSYRYSGIVHKKTLGVVPAADKKGFTAVLKKGKYAQRPA----KNTVRVDFKAGPRRSLKKLKNLLIGSKYRKDLTQAALRRASAVLRSQKPAPVKGKKAEFAKGKKP 143          
BLAST of CX046765 vs. ExPASy Swiss-Prot
Match: RL28E_SCHPO (Probable 60S ribosomal protein L28e OS=Schizosaccharomyces pombe GN=rpl28e PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.402e-12
Identity = 44/135 (32.59%), Postives = 70/135 (51.85%), Query Frame = 3
Query:   60 TVPGQLIWEIVKKNNCFLVK--QFGRGNASVEFSKEPNNLYNLNSFKHSGLANRKTVTIQPGGKDLSVVLATAKTKKQNKPASLLHKSTMRKEFPRMA-KAVVNQVADNYYRPDLKKAALARLSAVNRSLKVSKS 455
            +V   LIW++++ NN FLVK  +FG     ++F++EP N+   N+ + SGL N K V +Q       V++     K   KPA L  K  +     R   K++  ++    YR DL K ++AR SA+  S +  K+
Sbjct:    2 SVSNDLIWQVIRDNNRFLVKRPEFG----GIQFNREPVNVSGKNAQRFSGLCNDKAVGVQANSPRGVVLITKTNPKNAQKPAKLFRKDVIANASSRKTYKSIAGRIGRTGYRDDLVKVSVARASAILSSQRPKKT 132          
BLAST of CX046765 vs. ExPASy Swiss-Prot
Match: RL28_DICDI (60S ribosomal protein L28 OS=Dictyostelium discoideum GN=rpl28 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.551e-11
Identity = 48/136 (35.29%), Postives = 68/136 (50.00%), Query Frame = 3
Query:   75 LIWEIVKKNNCFLVKQFGRGNASVEFSKEPNNLYNLNSFKHSGLANRKTVTIQP-GGKDLSVVLATAKTKKQNKPASLLHKSTMRKEFPRMAKAVVNQVADNYYRPDLKKAALARLSAVNRSLKVSKSGVKKRNRQ 479
            L+W I+KKNN FL    G     +  S EP NL N NS K+SGLA R T+ +    GK   VV+++   KK   PA     +T      R     V  +A   Y P+L+ AAL RL  V  +L+ +K    ++ ++
Sbjct:    5 LVWSIIKKNNAFLKSSHG-----LTLSAEPGNLRNKNSLKYSGLARRTTIDVAAVNGK---VVVSSKIVKKAAFPAQSKKTTTFSTVNTRKTARFVKTLA-TQYAPELRAAALGRLHRVQSALRSAKKAAARKAKK 131          
The following BLAST results are available for this feature:
BLAST of CX046765 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
RL281_ARATH1.869e-5775.5260S ribosomal protein L28-1 OS=Arabidopsis thalian... [more]
RL282_ARATH3.189e-5774.8360S ribosomal protein L28-2 OS=Arabidopsis thalian... [more]
RL28_HUMAN3.943e-1534.7860S ribosomal protein L28 OS=Homo sapiens GN=RPL28... [more]
RL28_MOUSE5.150e-1534.7860S ribosomal protein L28 OS=Mus musculus GN=Rpl28... [more]
RL28_SPOFR6.726e-1540.6060S ribosomal protein L28 OS=Spodoptera frugiperda... [more]
RL28_BOVIN6.726e-1534.7860S ribosomal protein L28 OS=Bos taurus GN=RPL28 P... [more]
RL28_RAT1.268e-1334.0660S ribosomal protein L28 OS=Rattus norvegicus GN=... [more]
RL28_DROME6.295e-1335.1060S ribosomal protein L28 OS=Drosophila melanogast... [more]
RL28E_SCHPO1.402e-1232.59Probable 60S ribosomal protein L28e OS=Schizosacch... [more]
RL28_DICDI1.551e-1135.2960S ribosomal protein L28 OS=Dictyostelium discoid... [more]
back to top
Properties
Property NameValue
Genbank descriptionUCRCS09_10A10_g Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-10A10-B19-1-6.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX046765 ID=CX046765; Name=CX046765; organism=Citrus sinensis; type=EST; length=780bp
CCTGTTGCTCTTAGCATTCGAAGTGAGTCGGAGTGAAAAAAAGGCAGAAA
GAAATGGCGACGGTTCCAGGACAGTTGATTTGGGAGATCGTGAAGAAGAA
CAACTGCTTCTTGGTTAAACAATTCGGCAGAGGCAACGCCAGCGTCGAGT
TCAGCAAGGAACCCAACAACCTCTACAACCTTAACTCCTTCAAACACTCC
GGTTTGGCGAATCGGAAGACTGTGACCATTCAGCCTGGAGGCAAGGACCT
GTCTGTGGTGTTGGCCACTGCAAAGACCAAGAAGCAGAACAAGCCTGCCA
GCTTGCTTCACAAATCCACCATGAGGAAGGAGTTCCCAAGAATGGCTAAG
GCTGTTGTCAATCAGGTTGCTGATAACTACTACAGGCCAGACTTGAAGAA
GGCAGCCCTTGCAAGGCTTAGTGCTGTTAACAGGAGCCTAAAGGTCTCAA
AATCTGGTGTCAAAAAGAGAAACAGGCAGGCTACGAAGGTTCCCGTTAGG
AAGTGAACTTTAGGAGGAATCGAGTGATGTTATGCTTTGTTCTTGGAATG
GTTTTATTTTAGTTCTTATAAGTATCAAGAAGACAGTTTTCATTTATGTT
TAATTTTTGATGTACTGGAGATATTAGCCCGTTCCACCCCACTGGGAAAA
GGGTCAAAATTTAGATTTTAACTTGATTTTGTTTTTATGTTGAATTGGCG
TGTTATTTTGTATCATGAGATGAGTGCTACTTTTAAGCGCAATAAGTGTT
CAATGTGTTGAATTCTAATTGTCTAAAAAA
back to top