CX046761

Overview
NameCX046761
Unique NameCX046761
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length855
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX046761_ssr60 microsatellite CX046761_ssr60:60..71. BLAST: Citrus ESTs to Prunus persica proteins V1
CX046761_ssr104 microsatellite CX046761_ssr104:104..121. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig10148 contig Csv1_Contig10148:379..1233. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX046761 vs. ExPASy Swiss-Prot
Match: CSX1_SCHPO (RNA-binding post-transcriptional regulator csx1 OS=Schizosaccharomyces pombe GN=csx1 PE=1 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 2.126e-36
Identity = 80/177 (45.20%), Postives = 104/177 (58.76%), Query Frame = 1
Query:  187 TIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSE--GYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWATFSGSDRRTEACSD--LSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPK 705
            T+W+GDL  WMD TF+   ++   + VNVKV+R+K +       Y FV+F S AAAE+ L  Y+ +++P     F+LNWAT  G         D   SIFVGDL P   DS L  TF S YPS   AK+I+D  TG ++ YGFVRF  E E+  A+  M G  C  RP+RI VA+PK
Sbjct:   86 TLWMGDLEPWMDATFIQQLWASLNEPVNVKVMRSKASSSETLISYCFVQFSSSAAAERALMKYNNTMIPGAHCTFKLNWATGGGIQHNNFVSRDPEFSIFVGDLLPTTEDSDLFMTFRSIYPSCTSAKIIVDPVTGLSRKYGFVRFSSEKEQQHALMHMQGYLCQGRPLRISVASPK 262          
BLAST of CX046761 vs. ExPASy Swiss-Prot
Match: YG41_SCHPO (Uncharacterized RNA-binding protein C23E6.01c OS=Schizosaccharomyces pombe GN=SPBC23E6.01c PE=1 SV=2)

HSP 1 Score: 152.525 bits (384), Expect = 2.776e-36
Identity = 79/191 (41.36%), Postives = 116/191 (60.73%), Query Frame = 1
Query:  148 NGSNNNFTNDET----KTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWATFSG-SDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPK 705
            N SN   + DE      T+W+G+L  W+ E F+   ++  G+ V VK+IRN+ TG + GY FVEF S   A   + S +   +P T+  F+LNWA+  G  ++     S+ SIFVGDL+P+V +  +   F+S+Y S K AK++ D  T  ++GYGFVRF DEN++  A+ EM G  C  RP+R+ +ATPK
Sbjct:   77 NTSNYGSSRDENVYQKTTLWMGELEPWVTEAFIQQVWNTLGKAVKVKLIRNRYTGMNAGYCFVEFASPHEASSAM-SMNNKPIPGTNHLFKLNWASGGGLREKSISKASEYSIFVGDLSPNVNEFDVYSLFASRYNSCKSAKIMTDPQTNVSRGYGFVRFTDENDQKSALAEMQGQICGDRPIRVGLATPK 266          
BLAST of CX046761 vs. ExPASy Swiss-Prot
Match: TSAP1_HUMAN (tRNA selenocysteine 1-associated protein 1 OS=Homo sapiens GN=TRNAU1AP PE=1 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 2.599e-34
Identity = 81/177 (45.76%), Postives = 114/177 (64.41%), Query Frame = 1
Query:  187 TIWIGDLFHWMDETFLHNCFSHTGQ-VVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTD--QPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNG-VYCSSRPMRIDVATPK 705
            ++W+GDL  +MDE F+   F+  G+ V++VK+IRN+ TG   GY FVEF   A AEK L   +G  +P     + F+LN+AT+    ++ +   + S+FVGDL PDV D +L E F   YPS +G KV++D  TG +KGYGFV+F DE E+ RA+TE  G V   S+P+R+ VA PK
Sbjct:    4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRFKLNYATYG---KQPDNSPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLD-QTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLSVAIPK 176          
BLAST of CX046761 vs. ExPASy Swiss-Prot
Match: TSAP1_BOVIN (tRNA selenocysteine 1-associated protein 1 OS=Bos taurus GN=TRNAU1AP PE=2 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 3.394e-34
Identity = 80/177 (45.20%), Postives = 114/177 (64.41%), Query Frame = 1
Query:  187 TIWIGDLFHWMDETFLHNCFSHTGQ-VVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTD--QPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNG-VYCSSRPMRIDVATPK 705
            ++W+GDL  +MDE F+   F+  G+ V++VK+IRN+ TG   GY FVEF   A AEK L   +G  +P     + F+LN+AT+    ++ +   + S+FVGDL PDV D +L E F   YPS +G KV++D  TG +KGYGFV+F DE E+ RA+TE  G +   S+P+R+ VA PK
Sbjct:    4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRFKLNYATYG---KQPDNSPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLD-QTGVSKGYGFVKFTDELEQKRALTECQGAIGLGSKPVRLSVAIPK 176          
BLAST of CX046761 vs. ExPASy Swiss-Prot
Match: TSAP1_PONAB (tRNA selenocysteine 1-associated protein 1 OS=Pongo abelii GN=TRNAU1AP PE=2 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 7.561e-34
Identity = 80/177 (45.20%), Postives = 113/177 (63.84%), Query Frame = 1
Query:  187 TIWIGDLFHWMDETFLHNCFSHTGQ-VVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTD--QPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNG-VYCSSRPMRIDVATPK 705
            ++W+GDL  +MDE F+   F+  G+ V++VK+IRN+ TG   GY FVEF   A AEK L   +G  +P     + F+LN+ T+    ++ +   + S+FVGDL PDV D +L E F   YPS +G KV++D  TG +KGYGFV+F DE E+ RA+TE  G V   S+P+R+ VA PK
Sbjct:    4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRFKLNYVTYG---KQPDNSPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLD-QTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLSVAIPK 176          
BLAST of CX046761 vs. ExPASy Swiss-Prot
Match: TSAP1_RAT (tRNA selenocysteine 1-associated protein 1 OS=Rattus norvegicus GN=Trnau1ap PE=1 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 9.875e-34
Identity = 80/177 (45.20%), Postives = 113/177 (63.84%), Query Frame = 1
Query:  187 TIWIGDLFHWMDETFLHNCFSHTGQ-VVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTD--QPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNG-VYCSSRPMRIDVATPK 705
            ++W+GDL  +MDE F+   F+  G+ V++VK+IRN+ TG   GY FVEF   A AEK L   +G  +P     + F+LN+AT+    ++ +   + S+FVGDL PDV D +L E F   YPS +G KV++D  TG +KGYGFV+F DE E+ RA+TE  G V    +P+R+ VA PK
Sbjct:    4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRFKLNYATYG---KQPDNSPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLD-QTGVSKGYGFVKFTDELEQKRALTECQGAVGLGCKPVRLSVAIPK 176          
BLAST of CX046761 vs. ExPASy Swiss-Prot
Match: TSAP1_MOUSE (tRNA selenocysteine 1-associated protein 1 OS=Mus musculus GN=Trnau1ap PE=1 SV=2)

HSP 1 Score: 143.665 bits (361), Expect = 1.290e-33
Identity = 80/177 (45.20%), Postives = 113/177 (63.84%), Query Frame = 1
Query:  187 TIWIGDLFHWMDETFLHNCFSHTGQ-VVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTD--QPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNG-VYCSSRPMRIDVATPK 705
            ++W+GDL  +MDE F+   F+  G+ V++VK+IRN+ TG   GY FVEF   A AEK L   +G  +P     + F+LN+AT+    ++ +   + S+FVGDL PDV D +L E F   YPS +G KV++D  TG +KGYGFV+F DE E+ RA+TE  G V    +P+R+ VA PK
Sbjct:    4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRFKLNYATYG---KQPDNSPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDP-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGCKPVRLSVAIPK 176          
BLAST of CX046761 vs. ExPASy Swiss-Prot
Match: TSP1L_DANRE (tRNA selenocysteine 1-associated protein 1-like OS=Danio rerio GN=trnau1apl PE=2 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 1.022e-30
Identity = 73/177 (41.24%), Postives = 109/177 (61.58%), Query Frame = 1
Query:  187 TIWIGDLFHWMDETFLHNCFSHTGQVV-NVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQP--FRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTE-MNGVYCSSRPMRIDVATPK 705
            ++W+GDL  +MDE F+   FS  G+    VK+I ++ TG S GY FVE    A+ ++ +Q  +G L+P ++ P  F+LN+AT+    +R E   + S+FVGDL  +V D  L + F  K+PS KGAKV+ D   G ++GYGFV+F DENE+ +A+ E  N      +P+RI +A  K
Sbjct:    7 SLWMGDLDPYMDENFIKQAFSTMGETAFGVKIITHRVTGGSAGYCFVEMADEASVDRCVQRLNGKLVPGSNPPRKFKLNYATYG---KRPEPGPEFSVFVGDLTSEVDDYQLHQFFLKKFPSCKGAKVVTDP-YGNSRGYGFVKFSDENEQKKALEEFQNASGLGGKPIRISIAVNK 179          
BLAST of CX046761 vs. ExPASy Swiss-Prot
Match: TSAP1_DANRE (tRNA selenocysteine 1-associated protein 1 OS=Danio rerio GN=trnau1ap PE=2 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.747e-22
Identity = 61/175 (34.86%), Postives = 101/175 (57.71%), Query Frame = 1
Query:  187 TIWIGDLFHWMDETFLHNCFSHTGQ-VVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVY-CSSRPMRIDVATPK 705
            ++W+G+L  +MDE F+   F+  G+ VV +++IR+K TG++ GYGFVE     A E+ L+  +G  +P    P R   +  S   ++ E+ S  S+FV DL PDV D +L E F   + S    K+++D+N G +K  GFV F  E E+ RA+ ++ G      + +R+ +A+ +
Sbjct:    3 SLWMGNLEPYMDEDFICRAFAQMGETVVKIRLIRDKITGKNAGYGFVELADDTAVERCLRKVNGKPLPGATPPKRFKLSR-SNYGKQGES-STFSLFVSDLTPDVDDGMLYEFFHYHFSSCCSGKIVLDAN-GHSKCCGFVSFESEREQKRALVDLQGATGLGKKALRLSLASSR 174          
BLAST of CX046761 vs. ExPASy Swiss-Prot
Match: NAM8_YEAST (Protein NAM8 OS=Saccharomyces cerevisiae GN=NAM8 PE=1 SV=2)

HSP 1 Score: 103.99 bits (258), Expect = 1.132e-21
Identity = 65/196 (33.16%), Postives = 110/196 (56.12%), Query Frame = 1
Query:  151 GSNNNFTNDETKTIWIGDLFHWMDETFLHNCFSHTGQV-VNVKVIRNKQTGQ----------SEGYGFVEFYSRAAAEKVLQSYSGSLMPN-TDQPFRLNWATFSGSD-----RRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRI 687
            G++N         +++GDL    D+  +   ++  G+  +NV+++ N               ++GY FV+F S   A   L   +G L+PN  ++  +LNWAT S S+        ++ ++ SIFVGDLAP+VT+S L E F ++Y S   AK++ D  TG +KGYGFV+F + +E+  A++EM GV+ + R +++
Sbjct:   43 GASNVSLGTTGNQLYMGDLDPTWDKNTVRQIWASLGEANINVRMMWNNTLNNGSRSSMGPKNNQGYCFVDFPSSTHAANALLK-NGMLIPNFPNKKLKLNWATSSYSNSNNSLNNVKSGNNCSIFVGDLAPNVTESQLFELFINRYASTSHAKIVHDQVTGMSKGYGFVKFTNSDEQQLALSEMQGVFLNGRAIKV 237          
The following BLAST results are available for this feature:
BLAST of CX046761 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 116
Match NameE-valueIdentityDescription
CSX1_SCHPO2.126e-3645.20RNA-binding post-transcriptional regulator csx1 OS... [more]
YG41_SCHPO2.776e-3641.36Uncharacterized RNA-binding protein C23E6.01c OS=S... [more]
TSAP1_HUMAN2.599e-3445.76tRNA selenocysteine 1-associated protein 1 OS=Homo... [more]
TSAP1_BOVIN3.394e-3445.20tRNA selenocysteine 1-associated protein 1 OS=Bos ... [more]
TSAP1_PONAB7.561e-3445.20tRNA selenocysteine 1-associated protein 1 OS=Pong... [more]
TSAP1_RAT9.875e-3445.20tRNA selenocysteine 1-associated protein 1 OS=Ratt... [more]
TSAP1_MOUSE1.290e-3345.20tRNA selenocysteine 1-associated protein 1 OS=Mus ... [more]
TSP1L_DANRE1.022e-3041.24tRNA selenocysteine 1-associated protein 1-like OS... [more]
TSAP1_DANRE1.747e-2234.86tRNA selenocysteine 1-associated protein 1 OS=Dani... [more]
NAM8_YEAST1.132e-2133.16Protein NAM8 OS=Saccharomyces cerevisiae GN=NAM8 P... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_10A08_g Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-10A08-B15-1-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX046761 ID=CX046761; Name=CX046761; organism=Citrus sinensis; type=EST; length=855bp
GCGATGGCCATGATGCAACAGCAGCAGATGATGATGTATCCTCATCATTA
CATGCCGTACGGCGGCGGCGGTCACCCGTATTATCAGAACGGCGGCGGCG
TAAAGCAGCAGCAGCAGCAGCAACATGGATTGAGTAACGGAAAACAAAAC
GGATCTAATAATAATTTTACTAATGACGAGACTAAGACTATATGGATTGG
TGATTTGTTTCATTGGATGGACGAAACTTTTCTTCATAATTGTTTCTCAC
ATACTGGTCAGGTTGTAAATGTTAAAGTTATCCGCAATAAGCAAACTGGT
CAGTCAGAAGGGTATGGATTTGTTGAGTTCTATTCACGTGCTGCAGCTGA
GAAAGTTTTGCAGAGCTATAGTGGTTCTCTAATGCCAAATACTGACCAGC
CTTTCCGACTTAATTGGGCGACCTTTAGCGGCAGTGATAGACGAACAGAA
GCATGTTCTGATCTGTCTATATTTGTAGGAGATTTGGCTCCAGATGTAAC
TGATAGTATATTGCAGGAGACCTTTTCTAGTAAGTATCCATCTGTAAAAG
GAGCCAAAGTTATCATCGACTCGAATACTGGCCGTACAAAAGGTTACGGT
TTTGTTAGATTTGGTGATGAAAATGAGAGGTCAAGGGCCATGACCGAAAT
GAATGGTGTGTATTGTTCAAGTAGGCCGATGCGCATAGATGTTGCAACCC
CCAAAAAGGCTTCTGGATATCAACAACAGTATTCTTCACAAGCTCTTGTA
TTGGCTGGTGGACCTGGGTCAAATGGTGCTAGGGTCCAAGGTTCTCAATC
TGATGGCGAGTCCATAATGCGACTATATTTGTTGGGGCACTTGATTCTGA
TGTCA
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